Experiment set9IT086 for Ralstonia sp. UNC404CL21Col

Compare to:

Valeric acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS01810 -5.5 -3.8 glutamate 5-kinase compare
ABZR87_RS02565 -5.3 -6.3 glutamate synthase subunit beta compare
ABZR87_RS02595 -5.2 -12.1 shikimate kinase compare
ABZR87_RS02570 -5.2 -25.1 glutamate synthase-related protein compare
ABZR87_RS14530 -5.2 -10.4 3-isopropylmalate dehydrogenase compare
ABZR87_RS14505 -5.1 -7.0 phosphoribosylanthranilate isomerase compare
ABZR87_RS08630 -5.1 -9.8 dihydroorotase compare
ABZR87_RS14500 -5.1 -16.0 tryptophan synthase subunit beta compare
ABZR87_RS16660 -5.1 -8.8 helix-turn-helix domain-containing protein compare
ABZR87_RS02155 -5.0 -10.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS05200 -5.0 -21.4 homoserine O-acetyltransferase compare
ABZR87_RS16170 -4.9 -5.9 argininosuccinate lyase compare
ABZR87_RS14535 -4.9 -8.2 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS02640 -4.8 -17.3 diaminopimelate decarboxylase compare
ABZR87_RS16740 -4.8 -10.3 2-methylcitrate synthase compare
ABZR87_RS20875 -4.7 -10.9 LysR family transcriptional regulator compare
ABZR87_RS02140 -4.7 -21.0 anthranilate synthase component I compare
ABZR87_RS16735 -4.6 -19.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS01110 -4.6 -11.8 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS06770 -4.6 -9.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS02160 -4.6 -8.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS05170 -4.5 -3.1 acetylglutamate kinase compare
ABZR87_RS13790 -4.5 -11.9 chorismate synthase compare
ABZR87_RS14490 -4.5 -12.5 tryptophan synthase subunit alpha compare
ABZR87_RS07360 -4.5 -15.4 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS00285 -4.5 -3.1 acetylornithine transaminase compare
ABZR87_RS09445 -4.5 -13.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS20880 -4.4 -11.8 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS05100 -4.3 -7.2 RNA polymerase-binding protein DksA compare
ABZR87_RS16140 -4.2 -19.5 phosphoenolpyruvate carboxylase compare
ABZR87_RS00190 -4.2 -13.4 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS22970 -4.1 -12.6 cystathionine gamma-synthase family protein compare
ABZR87_RS07380 -4.1 -16.4 FAD/FMN-binding oxidoreductase compare
ABZR87_RS00210 -4.1 -11.7 nitrite/sulfite reductase compare
ABZR87_RS02590 -4.1 -13.2 3-dehydroquinate synthase compare
ABZR87_RS16745 -4.0 -11.0 methylisocitrate lyase compare
ABZR87_RS13250 -4.0 -4.1 phosphoserine phosphatase SerB compare
ABZR87_RS17145 -4.0 -20.2 AMP nucleosidase compare
ABZR87_RS09935 -4.0 -6.5 amino acid aminotransferase compare
ABZR87_RS02145 -3.9 -3.8 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS11440 -3.9 -10.9 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS16730 -3.9 -7.0 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS14540 -3.9 -9.2 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS09465 -3.8 -9.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS00835 -3.8 -9.4 argininosuccinate synthase compare
ABZR87_RS07060 -3.8 -17.2 RNA polymerase factor sigma-54 compare
ABZR87_RS14955 -3.7 -8.8 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS05590 -3.7 -2.5 orotate phosphoribosyltransferase compare
ABZR87_RS08625 -3.6 -2.5 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS04865 -3.6 -6.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00220 -3.5 -10.8 CysB family HTH-type transcriptional regulator compare
ABZR87_RS10085 -3.5 -3.1 Rne/Rng family ribonuclease compare
ABZR87_RS11925 -3.5 -15.4 phosphoenolpyruvate synthase compare
ABZR87_RS00195 -3.4 -6.2 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS00435 -3.2 -11.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS09615 -3.2 -2.1 50S ribosomal protein L19 compare
ABZR87_RS00205 -3.1 -4.1 DUF934 domain-containing protein compare
ABZR87_RS00185 -3.0 -5.1 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS07050 -3.0 -2.0 PTS IIA-like nitrogen regulatory protein PtsN compare
ABZR87_RS16750 -2.9 -11.2 propionate catabolism operon regulatory protein PrpR compare
ABZR87_RS10565 -2.9 -6.5 cupin domain-containing protein compare
ABZR87_RS10610 -2.9 -2.7 inositol monophosphatase family protein compare
ABZR87_RS00200 -2.8 -4.8 phosphoadenylyl-sulfate reductase compare
ABZR87_RS12785 -2.8 -3.3 endopeptidase La compare
ABZR87_RS05305 -2.6 -12.3 TetR family transcriptional regulator compare
ABZR87_RS13300 -2.6 -10.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS11125 -2.6 -8.5 cell division protein ZapE compare
ABZR87_RS00350 -2.6 -6.7 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS15440 -2.6 -4.7 ribonuclease G compare
ABZR87_RS14115 -2.4 -4.4 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS09450 -2.3 -6.6 prephenate dehydratase compare
ABZR87_RS14950 -2.3 -3.0 acetolactate synthase small subunit compare
ABZR87_RS06030 -2.2 -1.9 AraC family transcriptional regulator compare
ABZR87_RS09515 -2.2 -1.4 cysteine synthase CysM compare
ABZR87_RS00875 -2.2 -6.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS00325 -2.2 -3.1 peptidylprolyl isomerase compare
ABZR87_RS06705 -2.1 -11.7 glutamate--cysteine ligase compare
ABZR87_RS12790 -2.1 -6.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS06710 -2.1 -13.1 glutathione synthase compare
ABZR87_RS01605 -2.0 -8.1 shikimate dehydrogenase compare
ABZR87_RS00355 -2.0 -10.1 quinolinate synthase NadA compare
ABZR87_RS01675 -1.9 -2.7 carbohydrate kinase family protein compare
ABZR87_RS01645 -1.9 -5.9 type II 3-dehydroquinate dehydratase compare
ABZR87_RS01615 -1.9 -1.2 RNB domain-containing ribonuclease compare
ABZR87_RS16960 -1.9 -5.7 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS02480 -1.9 -3.8 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS12795 -1.9 -6.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS07700 -1.8 -2.8 peptidylprolyl isomerase compare
ABZR87_RS10980 -1.8 -1.6 tRNA-Leu compare
ABZR87_RS08695 -1.8 -9.4 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS06645 -1.8 -2.2 TlpA disulfide reductase family protein compare
ABZR87_RS11815 -1.8 -8.7 [protein-PII] uridylyltransferase compare
ABZR87_RS04125 -1.7 -6.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS05350 -1.7 -4.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS07665 -1.6 -7.3 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS00215 -1.6 -4.1 sulfite exporter TauE/SafE family protein compare
ABZR87_RS06395 -1.6 -4.5 response regulator compare
ABZR87_RS13475 -1.6 -6.8 PAS domain S-box protein compare
ABZR87_RS17310 -1.6 -4.3 PadR family transcriptional regulator compare
ABZR87_RS14380 -1.5 -5.3 glutamate racemase compare
ABZR87_RS16250 -1.5 -4.4 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS06845 -1.5 -7.6 heme o synthase compare
ABZR87_RS04995 -1.4 -2.2 DNA topoisomerase III compare
ABZR87_RS14680 -1.4 -2.4 SDR family oxidoreductase compare
ABZR87_RS02575 -1.4 -4.8 transposase compare
ABZR87_RS07730 -1.4 -2.1 lysophospholipid acyltransferase family protein compare
ABZR87_RS01885 -1.3 -4.8 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABZR87_RS06745 -1.3 -5.5 S41 family peptidase compare
ABZR87_RS10120 -1.3 -2.2 YceD family protein compare
ABZR87_RS11010 -1.3 -3.4 oxidative damage protection protein compare
ABZR87_RS06405 -1.3 -1.9 hypothetical protein compare
ABZR87_RS05060 -1.3 -4.1 DUF484 family protein compare
ABZR87_RS10400 -1.3 -3.7 hypothetical protein compare
ABZR87_RS04785 -1.3 -7.8 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS16180 -1.3 -5.1 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS05140 -1.2 -2.8 ATP-binding protein compare
ABZR87_RS06715 -1.2 -2.8 PTS sugar transporter subunit IIA compare
ABZR87_RS13645 -1.2 -1.1 hypothetical protein compare
ABZR87_RS11245 -1.2 -3.7 translational GTPase TypA compare
ABZR87_RS21795 -1.2 -3.9 NUDIX domain-containing protein compare
ABZR87_RS13175 -1.2 -1.5 tRNA-Leu compare
ABZR87_RS10525 -1.2 -1.5 L-threonylcarbamoyladenylate synthase compare
ABZR87_RS08700 -1.2 -4.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS06495 -1.1 -2.8 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
ABZR87_RS20730 -1.1 -1.9 hypothetical protein compare
ABZR87_RS20495 -1.1 -1.7 hypothetical protein compare
ABZR87_RS08655 -1.1 -3.9 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS20555 -1.1 -3.7 helix-turn-helix transcriptional regulator compare
ABZR87_RS12965 -1.1 -1.8 tail protein X compare
ABZR87_RS12345 -1.1 -1.1 dethiobiotin synthase compare
ABZR87_RS16080 -1.1 -1.9 P-II family nitrogen regulator compare
ABZR87_RS13285 -1.1 -7.3 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS10620 -1.1 -1.7 serine O-acetyltransferase compare
ABZR87_RS09500 -1.1 -3.2 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS09895 -1.0 -1.3 DUF1841 family protein compare
ABZR87_RS07625 -1.0 -2.7 Holliday junction branch migration protein RuvA compare
ABZR87_RS00345 -1.0 -7.6 L-aspartate oxidase compare
ABZR87_RS04945 -1.0 -1.7 DUF4390 domain-containing protein compare
ABZR87_RS04640 -1.0 -2.9 hypothetical protein compare
ABZR87_RS07635 -1.0 -2.3 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS10170 -1.0 -2.7 RseA family anti-sigma factor compare
ABZR87_RS03075 -1.0 -6.5 AGE family epimerase/isomerase compare
ABZR87_RS21375 -1.0 -2.1 DUF6566 family protein compare
ABZR87_RS10785 -1.0 -4.6 exodeoxyribonuclease V subunit beta compare
ABZR87_RS01980 -1.0 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS14495 -1.0 -3.0 site-specific DNA-methyltransferase compare
ABZR87_RS12735 -1.0 -6.8 winged helix DNA-binding protein compare
ABZR87_RS00830 -1.0 -2.7 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS13350 -1.0 -3.8 potassium transporter Kup compare
ABZR87_RS08750 -1.0 -4.3 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS00360 -1.0 -1.4 acyl-CoA desaturase compare
ABZR87_RS07620 -0.9 -2.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS09710 -0.9 -2.7 tRNA-Arg compare
ABZR87_RS20145 -0.9 -2.9 hypothetical protein compare
ABZR87_RS12665 -0.9 -1.7 ABC transporter ATP-binding protein compare
ABZR87_RS10930 -0.9 -2.1 outer membrane protein assembly factor BamB compare
ABZR87_RS10550 -0.9 -1.3 outer membrane protein assembly factor BamC compare
ABZR87_RS10240 -0.9 -1.7 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS20985 -0.9 -2.1 hypothetical protein compare
ABZR87_RS02335 -0.9 -4.4 ubiquinol oxidase subunit II compare
ABZR87_RS21095 -0.8 -0.7 TRAP transporter small permease compare
ABZR87_RS08645 -0.8 -0.7 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS10780 -0.8 -2.9 PD-(D/E)XK nuclease family protein compare
ABZR87_RS10310 -0.8 -3.5 FadR/GntR family transcriptional regulator compare
ABZR87_RS22690 -0.8 -2.5 XRE family transcriptional regulator compare
ABZR87_RS11195 -0.8 -5.0 pseudouridine synthase compare
ABZR87_RS02235 -0.8 -4.2 response regulator compare
ABZR87_RS20795 -0.8 -2.5 peptide chain release factor H compare
ABZR87_RS05205 -0.8 -3.7 methionine biosynthesis protein MetW compare
ABZR87_RS12955 -0.8 -2.5 terminase endonuclease subunit compare
ABZR87_RS06400 -0.8 -5.2 response regulator transcription factor compare
ABZR87_RS01760 -0.8 -0.9 PP0621 family protein compare
ABZR87_RS11940 -0.8 -2.5 SsrA-binding protein SmpB compare
ABZR87_RS11760 -0.8 -0.7 membrane protein compare
ABZR87_RS17650 -0.8 -3.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS23265 -0.8 -2.0 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS14375 -0.8 -1.8 fumarate hydratase compare
ABZR87_RS04940 -0.8 -3.8 PAS domain-containing sensor histidine kinase compare
ABZR87_RS07705 -0.8 -2.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABZR87_RS07435 -0.8 -2.2 DUF502 domain-containing protein compare
ABZR87_RS01685 -0.8 -3.5 histone H1-like DNA-binding protein compare
ABZR87_RS07355 -0.7 -4.5 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS19340 -0.7 -1.2 LysR family transcriptional regulator compare
ABZR87_RS06265 -0.7 -4.0 biotin synthase BioB compare
ABZR87_RS06385 -0.7 -4.6 CHASE3 domain-containing protein compare
ABZR87_RS22340 -0.7 -1.5 hypothetical protein compare
ABZR87_RS03180 -0.7 -1.7 hypothetical protein compare
ABZR87_RS09440 -0.7 -2.9 DUF2059 domain-containing protein compare
ABZR87_RS15810 -0.7 -2.2 hypothetical protein compare
ABZR87_RS02035 -0.7 -2.9 substrate-binding domain-containing protein compare
ABZR87_RS10820 -0.7 -3.8 LysR substrate-binding domain-containing protein compare
ABZR87_RS04725 -0.7 -0.6 universal stress protein compare
ABZR87_RS09505 -0.7 -3.9 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS17080 -0.7 -1.3 DUF2946 family protein compare
ABZR87_RS16185 -0.7 -1.2 dCTP deaminase compare
ABZR87_RS15965 -0.7 -1.6 c-type cytochrome compare
ABZR87_RS00795 -0.7 -2.7 site-specific tyrosine recombinase XerD compare
ABZR87_RS11015 -0.7 -3.3 amino-acid N-acetyltransferase compare
ABZR87_RS09820 -0.7 -1.9 RidA family protein compare
ABZR87_RS07335 -0.7 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in carbon source experiments

For carbon source Valeric acid across organisms