Experiment set9IT065 for Ralstonia sp. UNC404CL21Col

Compare to:

Sodium acetate carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS02155 -4.9 -9.8 anthranilate phosphoribosyltransferase compare
ABZR87_RS05100 -4.5 -6.8 RNA polymerase-binding protein DksA compare
ABZR87_RS02145 -4.4 -3.4 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS14535 -4.2 -7.9 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS11440 -3.8 -10.9 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS14500 -3.8 -16.2 tryptophan synthase subunit beta compare
ABZR87_RS13250 -3.7 -5.6 phosphoserine phosphatase SerB compare
ABZR87_RS02595 -3.7 -13.3 shikimate kinase compare
ABZR87_RS02640 -3.5 -14.0 diaminopimelate decarboxylase compare
ABZR87_RS06770 -3.4 -9.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS07360 -3.4 -15.1 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS02570 -3.4 -23.2 glutamate synthase-related protein compare
ABZR87_RS14950 -3.4 -5.2 acetolactate synthase small subunit compare
ABZR87_RS00835 -3.4 -9.4 argininosuccinate synthase compare
ABZR87_RS13790 -3.4 -13.0 chorismate synthase compare
ABZR87_RS01810 -3.4 -4.0 glutamate 5-kinase compare
ABZR87_RS02565 -3.3 -7.6 glutamate synthase subunit beta compare
ABZR87_RS05170 -3.3 -5.9 acetylglutamate kinase compare
ABZR87_RS08625 -3.3 -3.2 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS07380 -3.3 -17.7 FAD/FMN-binding oxidoreductase compare
ABZR87_RS09935 -3.3 -6.5 amino acid aminotransferase compare
ABZR87_RS14115 -3.2 -4.9 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS14955 -3.2 -9.7 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS09445 -3.2 -13.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS13415 -3.2 -9.9 IclR family transcriptional regulator compare
ABZR87_RS05200 -3.1 -18.5 homoserine O-acetyltransferase compare
ABZR87_RS22970 -3.1 -12.0 cystathionine gamma-synthase family protein compare
ABZR87_RS02590 -3.1 -11.4 3-dehydroquinate synthase compare
ABZR87_RS20875 -3.1 -9.8 LysR family transcriptional regulator compare
ABZR87_RS14490 -3.0 -12.3 tryptophan synthase subunit alpha compare
ABZR87_RS11625 -3.0 -12.0 malate synthase A compare
ABZR87_RS00285 -3.0 -4.5 acetylornithine transaminase compare
ABZR87_RS14530 -2.9 -12.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS20880 -2.9 -9.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS02140 -2.9 -17.5 anthranilate synthase component I compare
ABZR87_RS00205 -2.9 -4.7 DUF934 domain-containing protein compare
ABZR87_RS00210 -2.9 -11.3 nitrite/sulfite reductase compare
ABZR87_RS09450 -2.9 -7.6 prephenate dehydratase compare
ABZR87_RS09635 -2.8 -3.2 ribosome small subunit-dependent GTPase A compare
ABZR87_RS01110 -2.8 -9.1 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS04865 -2.8 -6.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS16170 -2.7 -6.9 argininosuccinate lyase compare
ABZR87_RS09465 -2.7 -8.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14505 -2.7 -6.7 phosphoribosylanthranilate isomerase compare
ABZR87_RS02160 -2.7 -6.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14540 -2.6 -7.2 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS00195 -2.6 -6.3 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS10565 -2.5 -6.3 cupin domain-containing protein compare
ABZR87_RS14360 -2.3 -9.3 acetate--CoA ligase compare
ABZR87_RS00220 -2.3 -9.9 CysB family HTH-type transcriptional regulator compare
ABZR87_RS01645 -2.3 -4.7 type II 3-dehydroquinate dehydratase compare
ABZR87_RS00190 -2.3 -11.6 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS00200 -2.3 -5.2 phosphoadenylyl-sulfate reductase compare
ABZR87_RS11125 -2.2 -8.3 cell division protein ZapE compare
ABZR87_RS07700 -2.2 -2.8 peptidylprolyl isomerase compare
ABZR87_RS05305 -2.1 -8.7 TetR family transcriptional regulator compare
ABZR87_RS08630 -2.1 -7.7 dihydroorotase compare
ABZR87_RS16250 -1.9 -5.1 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS00185 -1.9 -4.4 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS00325 -1.8 -2.6 peptidylprolyl isomerase compare
ABZR87_RS05590 -1.8 -3.3 orotate phosphoribosyltransferase compare
ABZR87_RS10240 -1.8 -3.0 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS10785 -1.8 -7.1 exodeoxyribonuclease V subunit beta compare
ABZR87_RS12785 -1.7 -5.3 endopeptidase La compare
ABZR87_RS04105 -1.7 -4.9 ATP synthase subunit I compare
ABZR87_RS05140 -1.7 -3.0 ATP-binding protein compare
ABZR87_RS10400 -1.7 -3.5 hypothetical protein compare
ABZR87_RS16080 -1.6 -4.3 P-II family nitrogen regulator compare
ABZR87_RS10820 -1.6 -6.9 LysR substrate-binding domain-containing protein compare
ABZR87_RS10550 -1.6 -1.3 outer membrane protein assembly factor BamC compare
ABZR87_RS13400 -1.6 -1.4 hypothetical protein compare
ABZR87_RS00215 -1.6 -6.5 sulfite exporter TauE/SafE family protein compare
ABZR87_RS15705 -1.5 -3.6 UvrD-helicase domain-containing protein compare
ABZR87_RS15810 -1.5 -3.5 hypothetical protein compare
ABZR87_RS00350 -1.5 -5.3 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS16185 -1.4 -2.6 dCTP deaminase compare
ABZR87_RS16180 -1.4 -5.0 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS01605 -1.4 -6.1 shikimate dehydrogenase compare
ABZR87_RS22340 -1.4 -2.4 hypothetical protein compare
ABZR87_RS14890 -1.4 -1.4 preprotein translocase subunit SecG compare
ABZR87_RS08695 -1.4 -7.9 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS17115 -1.4 -4.2 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS11760 -1.3 -1.0 membrane protein compare
ABZR87_RS09460 -1.3 -3.5 prephenate dehydrogenase compare
ABZR87_RS12965 -1.3 -3.4 tail protein X compare
ABZR87_RS12790 -1.3 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS05130 -1.3 -1.3 CsbD family protein compare
ABZR87_RS10120 -1.3 -2.4 YceD family protein compare
ABZR87_RS00875 -1.3 -4.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS09710 -1.3 -3.2 tRNA-Arg compare
ABZR87_RS10620 -1.2 -2.4 serine O-acetyltransferase compare
ABZR87_RS08655 -1.2 -4.2 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS09525 -1.2 -8.9 histone deacetylase family protein compare
ABZR87_RS00355 -1.2 -6.7 quinolinate synthase NadA compare
ABZR87_RS10980 -1.2 -1.4 tRNA-Leu compare
ABZR87_RS04975 -1.2 -1.6 peptide deformylase compare
ABZR87_RS00360 -1.2 -2.2 acyl-CoA desaturase compare
ABZR87_RS00435 -1.2 -5.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS07620 -1.2 -2.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS13745 -1.1 -8.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS13300 -1.1 -6.6 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS02575 -1.1 -4.7 transposase compare
ABZR87_RS08700 -1.1 -4.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ABZR87_RS16125 -1.1 -2.6 heme biosynthesis protein HemY compare
ABZR87_RS14375 -1.1 -3.4 fumarate hydratase compare
ABZR87_RS00345 -1.1 -8.2 L-aspartate oxidase compare
ABZR87_RS14495 -1.1 -3.0 site-specific DNA-methyltransferase compare
ABZR87_RS05580 -1.0 -2.2 diaminopimelate epimerase compare
ABZR87_RS06745 -1.0 -4.5 S41 family peptidase compare
ABZR87_RS02480 -1.0 -2.1 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS00795 -1.0 -3.5 site-specific tyrosine recombinase XerD compare
ABZR87_RS17340 -1.0 -2.4 MarR family transcriptional regulator compare
ABZR87_RS14380 -1.0 -4.6 glutamate racemase compare
ABZR87_RS05495 -1.0 -1.3 carboxymuconolactone decarboxylase family protein compare
ABZR87_RS23380 -1.0 -1.6 chemotaxis protein CheW compare
ABZR87_RS04945 -1.0 -2.2 DUF4390 domain-containing protein compare
ABZR87_RS07635 -1.0 -2.5 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS21365 -1.0 -1.3 ligase-associated DNA damage response endonuclease PdeM compare
ABZR87_RS04940 -1.0 -4.9 PAS domain-containing sensor histidine kinase compare
ABZR87_RS11815 -1.0 -6.6 [protein-PII] uridylyltransferase compare
ABZR87_RS01615 -1.0 -1.3 RNB domain-containing ribonuclease compare
ABZR87_RS16660 -1.0 -3.3 helix-turn-helix domain-containing protein compare
ABZR87_RS11065 -1.0 -4.4 nitrogen regulation protein NR(II) compare
ABZR87_RS12795 -1.0 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS13285 -1.0 -6.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS05010 -0.9 -3.1 rod shape-determining protein RodA compare
ABZR87_RS10780 -0.9 -3.7 PD-(D/E)XK nuclease family protein compare
ABZR87_RS13475 -0.9 -4.8 PAS domain S-box protein compare
ABZR87_RS00845 -0.9 -3.8 DUF3579 domain-containing protein compare
ABZR87_RS18440 -0.9 -2.3 VOC family protein compare
ABZR87_RS10610 -0.9 -1.0 inositol monophosphatase family protein compare
ABZR87_RS06705 -0.9 -6.2 glutamate--cysteine ligase compare
ABZR87_RS00865 -0.9 -1.1 VTT domain-containing protein compare
ABZR87_RS06715 -0.9 -2.5 PTS sugar transporter subunit IIA compare
ABZR87_RS08660 -0.9 -3.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS00625 -0.8 -1.7 hypothetical protein compare
ABZR87_RS11070 -0.8 -4.9 nitrogen regulation protein NR(I) compare
ABZR87_RS09625 -0.8 -5.7 CobD/CbiB family protein compare
ABZR87_RS04125 -0.8 -3.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS06710 -0.8 -6.2 glutathione synthase compare
ABZR87_RS07625 -0.8 -2.2 Holliday junction branch migration protein RuvA compare
ABZR87_RS11730 -0.8 -2.5 M55 family metallopeptidase compare
ABZR87_RS05060 -0.8 -3.2 DUF484 family protein compare
ABZR87_RS06395 -0.8 -3.0 response regulator compare
ABZR87_RS11585 -0.8 -2.8 gamma-glutamylcyclotransferase compare
ABZR87_RS21095 -0.8 -0.6 TRAP transporter small permease compare
ABZR87_RS15440 -0.8 -2.1 ribonuclease G compare
ABZR87_RS01780 -0.8 -1.0 MarC family protein compare
ABZR87_RS00965 -0.8 -5.6 bifunctional anthranilate synthase component I family protein/class IV aminotransferase compare
ABZR87_RS13175 -0.8 -1.1 tRNA-Leu compare
ABZR87_RS01760 -0.8 -0.9 PP0621 family protein compare
ABZR87_RS22405 -0.7 -1.0 hypothetical protein compare
ABZR87_RS06030 -0.7 -1.0 AraC family transcriptional regulator compare
ABZR87_RS07785 -0.7 -2.3 hypothetical protein compare
ABZR87_RS19205 -0.7 -1.5 hypothetical protein compare
ABZR87_RS03665 -0.7 -2.7 MarR family transcriptional regulator compare
ABZR87_RS18910 -0.7 -1.5 DUF2239 family protein compare
ABZR87_RS06315 -0.7 -5.2 bifunctional isocitrate dehydrogenase kinase/phosphatase compare
ABZR87_RS07605 -0.7 -2.2 D-aminoacyl-tRNA deacylase compare
ABZR87_RS18315 -0.7 -1.5 DUF971 domain-containing protein compare
ABZR87_RS11770 -0.7 -4.5 succinyldiaminopimelate transaminase compare
ABZR87_RS20490 -0.7 -4.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
ABZR87_RS20985 -0.7 -2.1 hypothetical protein compare
ABZR87_RS17565 -0.7 -2.7 helix-turn-helix transcriptional regulator compare
ABZR87_RS14330 -0.7 -0.7 hypothetical protein compare
ABZR87_RS14575 -0.7 -2.7 GntR family transcriptional regulator compare
ABZR87_RS00910 -0.7 -2.8 hypothetical protein compare
ABZR87_RS07950 -0.7 -4.1 sodium/substrate symporter small subunit compare
ABZR87_RS05205 -0.7 -3.1 methionine biosynthesis protein MetW compare
ABZR87_RS01565 -0.7 -4.1 NADP-dependent malic enzyme compare
ABZR87_RS22325 -0.7 -2.2 H-NS histone family protein compare
ABZR87_RS23465 -0.7 -3.8 malonate transporter subunit MadM compare
ABZR87_RS08970 -0.7 -3.5 protein TolQ compare
ABZR87_RS15495 -0.7 -5.2 O-antigen ligase family protein compare
ABZR87_RS06405 -0.6 -0.8 hypothetical protein compare
ABZR87_RS07470 -0.6 -4.0 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07955 -0.6 -4.6 sensor histidine kinase compare
ABZR87_RS11245 -0.6 -2.7 translational GTPase TypA compare
ABZR87_RS00830 -0.6 -1.7 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS07330 -0.6 -2.3 hypothetical protein compare
ABZR87_RS10190 -0.6 -4.0 translation elongation factor 4 compare
ABZR87_RS23360 -0.6 -1.4 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS06845 -0.6 -3.6 heme o synthase compare
ABZR87_RS09440 -0.6 -3.0 DUF2059 domain-containing protein compare
ABZR87_RS21375 -0.6 -0.7 DUF6566 family protein compare
ABZR87_RS09875 -0.6 -1.3 GNAT family protein compare
ABZR87_RS09820 -0.6 -2.2 RidA family protein compare
ABZR87_RS13315 -0.6 -4.0 RluA family pseudouridine synthase compare
ABZR87_RS02330 -0.6 -4.1 cytochrome o ubiquinol oxidase subunit I compare
ABZR87_RS07960 -0.6 -4.8 response regulator transcription factor compare
ABZR87_RS15480 -0.6 -4.4 glycosyltransferase family 25 protein compare
ABZR87_RS15500 -0.6 -2.8 glycosyltransferase compare
ABZR87_RS14720 -0.6 -2.4 urease accessory UreF family protein compare
ABZR87_RS14675 -0.6 -0.6 glyoxalase compare
ABZR87_RS22015 -0.6 -1.3 hypothetical protein compare
ABZR87_RS21735 -0.6 -0.9 DUF2917 domain-containing protein compare
ABZR87_RS05500 -0.6 -3.2 RNA polymerase sigma-70 factor compare
ABZR87_RS11330 -0.6 -1.3 transcriptional repressor LexA compare
ABZR87_RS01035 -0.6 -2.2 histidine utilization repressor compare
ABZR87_RS09535 -0.6 -2.2 methionine ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Ralstonia sp. UNC404CL21Col in carbon source experiments

For carbon source Sodium acetate across organisms