Experiment set8S45 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_08085 -4.1 -6.3 helix-turn-helix domain-containing protein compare
IAI47_16995 -3.9 -2.4 protein YrbN compare
IAI47_05420 -3.9 -1.9 PTS glucose transporter subunit IIA compare
IAI47_12645 -3.8 -6.3 porin OmpA compare
IAI47_09040 -3.7 -2.5 NAD-dependent epimerase compare
IAI47_09580 -3.4 -5.2 FNR family transcription factor compare
IAI47_14730 -3.0 -1.2 exodeoxyribonuclease VII small subunit compare
IAI47_00655 -2.9 -7.1 glycosyltransferase family 4 protein compare
IAI47_18145 -2.9 -2.8 elongation factor Tu compare
IAI47_15970 -2.8 -3.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_11450 -2.8 -6.9 ankyrin repeat domain-containing protein compare
IAI47_15485 -2.8 -1.9 molecular chaperone Skp compare
IAI47_00760 -2.6 -3.8 envelope stress response regulator transcription factor CpxR compare
IAI47_05070 -2.6 -1.1 outer membrane protein assembly factor BamB compare
IAI47_10825 -2.5 -1.9 tRNA-Val compare
IAI47_04400 -2.5 -6.0 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_02400 -2.4 -1.5 YhdT family protein compare
IAI47_03375 -2.4 -10.2 peptide chain release factor 3 compare
IAI47_19690 -2.4 -1.2 hypothetical protein compare
IAI47_13685 -2.3 -4.6 Tol-Pal system protein TolB compare
IAI47_02090 -2.3 -3.8 elongation factor Tu compare
IAI47_13950 -2.3 -1.8 PhoH family protein compare
IAI47_06325 -2.3 -7.1 acetate kinase compare
IAI47_07885 -2.1 -1.2 tRNA-Asn compare
IAI47_08035 -2.1 -1.7 flagellar hook-basal body complex protein FliE compare
IAI47_04300 -2.1 -6.6 recombinase RecA compare
IAI47_17120 -2.0 -3.2 BolA family iron metabolism protein IbaG compare
IAI47_05195 -2.0 -2.7 DnaA inactivator Hda compare
IAI47_06320 -2.0 -7.0 phosphate acetyltransferase compare
IAI47_11760 -2.0 -1.2 TonB-dependent siderophore receptor compare
IAI47_15605 -1.9 -1.5 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_00870 -1.9 -0.7 50S ribosomal protein L31 compare
IAI47_17005 -1.9 -6.9 polyribonucleotide nucleotidyltransferase compare
IAI47_00780 -1.9 -3.9 6-phosphofructokinase compare
IAI47_09055 -1.9 -9.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_11310 -1.9 -4.3 redox-regulated ATPase YchF compare
IAI47_11375 -1.8 -1.3 hypothetical protein compare
IAI47_12885 -1.8 -6.0 pyruvate formate lyase 1-activating protein compare
IAI47_02380 -1.8 -2.0 DNA-binding transcriptional regulator Fis compare
IAI47_16990 -1.8 -2.9 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI47_17560 -1.8 -1.2 ROK family transcriptional regulator compare
IAI47_03820 -1.7 -3.7 site-specific tyrosine recombinase XerD compare
IAI47_10840 -1.7 -4.6 pyruvate kinase PykF compare
IAI47_05520 -1.7 -0.9 tRNA-Ala compare
IAI47_09240 -1.7 -3.1 HTH-type transcriptional regulator CysB compare
IAI47_00875 -1.6 -1.7 met regulon transcriptional regulator MetJ compare
IAI47_07475 -1.6 -1.1 hypothetical protein compare
IAI47_02350 -1.6 -0.8 tRNA-Thr compare
IAI47_05745 -1.6 -1.7 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_00735 -1.6 -1.8 protein-export chaperone SecB compare
IAI47_16085 -1.6 -1.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_21880 -1.6 -0.6 ParA family protein compare
IAI47_01135 -1.6 -0.8 hypothetical protein compare
IAI47_08445 -1.5 -1.4 Holliday junction branch migration protein RuvA compare
IAI47_01780 -1.5 -2.4 Fe-S biogenesis protein NfuA compare
IAI47_07350 -1.5 -0.7 hypothetical protein compare
IAI47_04425 -1.5 -7.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_19945 -1.5 -0.7 hypothetical protein compare
IAI47_18240 -1.5 -2.6 NAD(P)H-flavin reductase compare
IAI47_10320 -1.5 -1.1 Rrf2 family transcriptional regulator compare
IAI47_18830 -1.5 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_12880 -1.5 -9.2 formate C-acetyltransferase compare
IAI47_07490 -1.5 -1.7 DNA-binding protein compare
IAI47_06565 -1.4 -1.5 YejL family protein compare
IAI47_09235 -1.4 -1.2 type I DNA topoisomerase compare
IAI47_07020 -1.4 -1.2 hypothetical protein compare
IAI47_08600 -1.4 -3.2 TraR/DksA C4-type zinc finger protein compare
IAI47_06455 -1.4 -4.7 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_18400 -1.4 -2.5 tyrosine recombinase XerC compare
IAI47_13690 -1.4 -0.8 cell envelope integrity protein TolA compare
IAI47_08745 -1.3 -1.5 transcription antiterminator/RNA stability regulator CspE compare
IAI47_13570 -1.3 -2.2 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_19035 -1.3 -1.8 transcriptional regulator compare
IAI47_11655 -1.3 -1.9 hypothetical protein compare
IAI47_13750 -1.3 -3.3 succinate dehydrogenase iron-sulfur subunit compare
IAI47_13155 -1.3 -1.6 H-NS histone family protein compare
IAI47_13740 -1.3 -1.2 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_15600 -1.3 -2.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_14945 -1.3 -2.9 pyrroline-5-carboxylate reductase compare
IAI47_01365 -1.3 -1.5 inorganic phosphate transporter PitA compare
IAI47_14470 -1.3 -1.8 YbaB/EbfC family nucleoid-associated protein compare
IAI47_04870 -1.3 -4.7 elongation factor 4 compare
IAI47_15155 -1.3 -2.7 DUF943 family protein compare
IAI47_04835 -1.3 -5.3 ATP-dependent RNA helicase SrmB compare
IAI47_03680 -1.2 -7.0 transketolase compare
IAI47_10565 -1.2 -1.7 DUF4113 domain-containing protein compare
IAI47_03240 -1.2 -2.1 TonB system transport protein ExbD compare
IAI47_06450 -1.2 -3.8 ribonucleotide-diphosphate reductase subunit beta compare
IAI47_07015 -1.2 -5.4 ABC transporter ATP-binding protein compare
IAI47_06475 -1.2 -4.0 transcriptional regulator RcsB compare
IAI47_15995 -1.2 -1.7 leu operon leader peptide compare
IAI47_12375 -1.2 -1.1 acyl carrier protein compare
IAI47_07470 -1.2 -1.7 AlpA family transcriptional regulator compare
IAI47_21235 -1.2 -1.9 hypothetical protein compare
IAI47_07165 -1.2 -1.6 exodeoxyribonuclease I compare
IAI47_00465 -1.2 -1.4 ribosome-dependent GTPase TypA compare
IAI47_06400 -1.1 -1.9 NADH-quinone oxidoreductase subunit J compare
IAI47_10835 -1.1 -0.7 tRNA-Val compare
IAI47_09210 -1.1 -5.1 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_17035 -1.1 -1.5 ribosome maturation factor RimP compare
IAI47_17020 -1.1 -1.6 30S ribosome-binding factor RbfA compare
IAI47_18770 -1.1 -2.1 type I addiction module toxin, SymE family compare
IAI47_18055 -1.1 -4.4 DNA-binding protein HU-alpha compare
IAI47_09550 -1.1 -3.4 hypothetical protein compare
IAI47_21655 -1.1 -0.7 LacI family DNA-binding transcriptional regulator compare
IAI47_18415 -1.1 -1.7 lipoprotein compare
IAI47_17215 -1.1 -0.8 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_13695 -1.1 -0.6 colicin uptake protein TolR compare
IAI47_12105 -1.1 -5.0 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI47_19050 -1.0 -2.2 hypothetical protein compare
IAI47_18480 -1.0 -6.6 lipid III flippase WzxE compare
IAI47_18420 -1.0 -6.6 class I adenylate cyclase compare
IAI47_10775 -1.0 -3.2 ribonuclease T compare
IAI47_13640 -1.0 -2.0 methylated-DNA--[protein]-cysteine S-methyltransferase compare
IAI47_06675 -1.0 -1.6 DUF1232 domain-containing protein compare
IAI47_18755 -1.0 -3.3 glutathione S-transferase compare
IAI47_06120 -1.0 -2.4 YfcZ/YiiS family protein compare
IAI47_02725 -1.0 -4.0 gamma-glutamylcyclotransferase compare
IAI47_02040 -1.0 -4.0 peptidylprolyl isomerase compare
IAI47_00430 -1.0 -6.2 DNA polymerase I compare
IAI47_18540 -1.0 -3.6 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
IAI47_18840 -1.0 -1.3 membrane protein insertion efficiency factor YidD compare
IAI47_04450 -1.0 -1.1 tRNA-Ala compare
IAI47_17965 -1.0 -5.7 glucose-6-phosphate isomerase compare
IAI47_05465 -0.9 -2.4 bile acid:sodium symporter compare
IAI47_15810 -0.9 -2.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_12865 -0.9 -5.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_06245 -0.9 -1.9 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_04950 -0.9 -5.0 nitrogen regulatory protein P-II compare
IAI47_20995 -0.9 -1.6 hypothetical protein compare
IAI47_11415 -0.9 -0.8 hypothetical protein compare
IAI47_05150 -0.9 -4.4 exopolyphosphatase compare
IAI47_11540 -0.9 -2.2 type VI secretion system tip protein VgrG compare
IAI47_18705 -0.9 -4.7 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_06420 -0.9 -2.2 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_11210 -0.9 -4.4 type VI secretion system-associated protein TagF compare
IAI47_05425 -0.9 -2.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_08280 -0.9 -4.7 flagellar transcriptional regulator FlhD compare
IAI47_13760 -0.9 -1.7 succinate dehydrogenase membrane anchor subunit compare
IAI47_09185 -0.9 -2.3 glutamine amidotransferase compare
IAI47_20705 -0.9 -0.7 sulfur carrier protein ThiS compare
IAI47_16950 -0.9 -2.4 GIY-YIG nuclease family protein compare
IAI47_13545 -0.8 -4.1 6-phosphogluconolactonase compare
IAI47_18520 -0.8 -5.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_00460 -0.8 -1.1 glutamate--ammonia ligase compare
IAI47_04350 -0.8 -6.0 glutamate--cysteine ligase compare
IAI47_03915 -0.8 -2.9 RNA pyrophosphohydrolase compare
IAI47_17205 -0.8 -1.0 PTS phosphocarrier protein NPr compare
IAI47_06360 -0.8 -1.3 NADH-quinone oxidoreductase subunit A compare
IAI47_18530 -0.8 -1.5 thioredoxin TrxA compare
IAI47_06380 -0.8 -1.2 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_12260 -0.8 -2.9 hypothetical protein compare
IAI47_19350 -0.8 -1.9 DUF305 domain-containing protein compare
IAI47_06410 -0.8 -2.7 NADH-quinone oxidoreductase subunit L compare
IAI47_09795 -0.8 -2.3 DUF1283 family protein compare
IAI47_10550 -0.8 -2.3 two-component-system connector protein YcgZ compare
IAI47_11610 -0.8 -3.0 serine/threonine-protein phosphatase compare
IAI47_03615 -0.8 -3.6 glutathione synthase compare
IAI47_15880 -0.8 -1.3 DNA gyrase inhibitor YacG compare
IAI47_06390 -0.8 -1.1 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_01625 -0.8 -2.5 GNAT family N-acetyltransferase compare
IAI47_03765 -0.8 -2.6 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_00345 -0.8 -3.6 YgiW/YdeI family stress tolerance OB fold protein compare
IAI47_06370 -0.8 -2.8 NADH-quinone oxidoreductase subunit C/D compare
IAI47_15980 -0.8 -4.4 catabolite repressor/activator compare
IAI47_01015 -0.8 -2.4 ilv operon leader peptide compare
IAI47_03400 -0.7 -3.0 deoxyribose-phosphate aldolase compare
IAI47_05435 -0.7 -2.5 hypothetical protein compare
IAI47_12175 -0.7 -0.9 anti-sigma-28 factor FlgM compare
IAI47_00675 -0.7 -5.3 glycosyltransferase family 9 protein compare
IAI47_07750 -0.7 -2.8 phosphonate metabolism transcriptional regulator PhnF compare
IAI47_03490 -0.7 -1.9 hypothetical protein compare
IAI47_17185 -0.7 -2.5 RNA polymerase factor sigma-54 compare
IAI47_16055 -0.7 -4.5 RNA polymerase-associated protein RapA compare
IAI47_07025 -0.7 -2.4 glycosyltransferase family 4 protein compare
IAI47_17235 -0.7 -5.0 stringent starvation protein A compare
IAI47_13310 -0.7 -2.9 MerR family transcriptional regulator compare
IAI47_14980 -0.7 -1.7 hypothetical protein compare
IAI47_13495 -0.7 -3.2 GTP 3',8-cyclase MoaA compare
IAI47_16080 -0.7 -3.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_03740 -0.7 -3.2 cell division protein ZapA compare
IAI47_01830 -0.7 -5.0 phosphoenolpyruvate carboxykinase (ATP) compare
IAI47_11220 -0.7 -3.1 serine/threonine-protein phosphatase compare
IAI47_00940 -0.7 -3.3 HTH-type transcriptional repressor FabR compare
IAI47_05815 -0.7 -1.6 hypothetical protein compare
IAI47_10945 -0.7 -2.3 vitamin B12 ABC transporter permease BtuC compare
IAI47_12655 -0.7 -4.5 Lon protease family protein compare
IAI47_02345 -0.7 -0.7 5S ribosomal RNA compare
IAI47_20680 -0.7 -2.8 hypothetical protein compare
IAI47_18470 -0.7 -5.2 ECA oligosaccharide polymerase compare
IAI47_12030 -0.7 -4.1 PTS glucose transporter subunit IIBC compare
IAI47_14985 -0.7 -2.1 hypothetical protein compare
IAI47_10520 -0.7 -1.4 pyridoxamine 5'-phosphate oxidase compare
IAI47_15595 -0.7 -0.7 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_18410 -0.7 -1.7 diaminopimelate epimerase compare
IAI47_01395 -0.7 -2.8 SDR family oxidoreductase compare
IAI47_07075 -0.6 -3.2 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_01825 -0.6 -2.8 two-component system sensor histidine kinase EnvZ compare
IAI47_07895 -0.6 -3.7 hypothetical protein compare
IAI47_16195 -0.6 -3.5 transaldolase compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=UGA synthetic gw pH3.9 with 1 mM Glucose and 5 mM NaH2PO4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms