Experiment set8IT086 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 1x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS15660 +1.3 2.3 hypothetical protein compare
BWI76_RS15015 +1.1 2.6 DUF2132 domain-containing protein compare
BWI76_RS00720 +0.9 2.5 DNA-binding response regulator compare
BWI76_RS12465 +0.9 1.7 phage shock protein D compare
BWI76_RS19460 +0.9 2.1 lipoprotein compare
BWI76_RS09455 +0.9 2.0 YbjN domain-containing protein compare
BWI76_RS13685 +0.9 2.8 IclR family transcriptional regulator compare
BWI76_RS21340 +0.9 2.8 SoxR reducing system protein RseC compare
BWI76_RS20155 +0.9 2.6 NADH-quinone oxidoreductase subunit I compare
BWI76_RS18455 +0.9 1.9 tRNA-Ser compare
BWI76_RS21675 +0.9 2.2 hypothetical protein compare
BWI76_RS09440 +0.8 2.6 hypothetical protein compare
BWI76_RS15190 +0.8 3.3 GGDEF domain-containing protein compare
BWI76_RS01585 +0.8 4.5 transcriptional regulator compare
BWI76_RS17765 +0.8 2.7 hypothetical protein compare
BWI76_RS10500 +0.8 2.3 flavoprotein monooxygenase compare
BWI76_RS11635 +0.8 1.8 ABC transporter compare
BWI76_RS22815 +0.8 5.1 hybrid sensor histidine kinase/response regulator compare
BWI76_RS15860 +0.8 2.1 adenine-specific DNA methyltransferase compare
BWI76_RS14040 +0.7 1.4 thiaminase compare
BWI76_RS05045 +0.7 2.9 general secretion pathway protein GspM compare
BWI76_RS09550 +0.7 3.0 low-specificity L-threonine aldolase compare
BWI76_RS05465 +0.7 1.5 amidohydrolase compare
BWI76_RS14670 +0.7 1.5 hypothetical protein compare
BWI76_RS26285 +0.7 2.0 glycerophosphodiester phosphodiesterase compare
BWI76_RS19205 +0.7 2.2 putative proline iminopeptidase compare
BWI76_RS14770 +0.7 1.4 PTS IIA 2 domain protein compare
BWI76_RS15095 +0.7 2.5 isochorismatase compare
BWI76_RS16195 +0.7 1.0 hypothetical protein compare
BWI76_RS17200 +0.7 1.5 hypothetical protein compare
BWI76_RS17920 +0.7 1.4 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS20145 +0.7 1.5 NADH-quinone oxidoreductase subunit K compare
BWI76_RS09595 +0.7 4.1 macrolide transporter subunit MacA compare
BWI76_RS08405 +0.7 2.5 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS24275 +0.7 2.2 biopolymer transport protein ExbD compare
BWI76_RS24950 +0.7 2.3 hypothetical protein compare
BWI76_RS11900 +0.6 1.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS26095 +0.6 0.8 shikimate kinase compare
BWI76_RS16785 +0.6 2.1 peptidase M20 compare
BWI76_RS09635 +0.6 1.0 amino acid ABC transporter ATP-binding protein compare
BWI76_RS07785 +0.6 1.5 transcriptional regulator compare
BWI76_RS26405 +0.6 1.0 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS18055 +0.6 2.2 copper resistance protein D compare
BWI76_RS19700 +0.6 1.8 deoxyribonuclease IV compare
BWI76_RS06520 +0.6 2.2 trigger factor compare
BWI76_RS00820 +0.6 4.3 fructose-6-phosphate aldolase compare
BWI76_RS07620 +0.6 3.4 transcriptional regulator BetI compare
BWI76_RS17375 +0.6 1.9 nitrate ABC transporter, permease protein compare
BWI76_RS15185 +0.6 1.1 N-acetyltransferase compare
BWI76_RS17645 +0.6 1.4 hypothetical protein compare
BWI76_RS13215 +0.6 1.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS04970 +0.6 1.9 ABC transporter permease compare
BWI76_RS10920 +0.6 2.1 putative TetR family transcriptional regulator compare
BWI76_RS14065 +0.6 1.5 hypothetical protein compare
BWI76_RS15350 +0.6 1.1 hypothetical protein compare
BWI76_RS02180 +0.6 0.7 hypothetical protein compare
BWI76_RS14015 +0.6 2.5 L-2,4-diaminobutyrate decarboxylase compare
BWI76_RS12790 +0.6 1.1 lactate dehydrogenase compare
BWI76_RS05645 +0.6 2.1 fructuronate reductase compare
BWI76_RS08495 +0.6 2.8 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS08720 +0.6 1.6 imidazolonepropionase compare
BWI76_RS24960 +0.6 2.0 N-acetyltransferase compare
BWI76_RS15685 +0.6 1.5 hypothetical protein compare
BWI76_RS21685 +0.6 1.2 hypothetical protein compare
BWI76_RS07640 +0.6 1.7 short chain dehydrogenase compare
BWI76_RS18335 +0.6 3.5 DNA-binding response regulator compare
BWI76_RS16190 +0.6 2.2 universal stress protein UspE compare
BWI76_RS18410 +0.6 1.5 drug/metabolite exporter YedA compare
BWI76_RS24825 +0.6 1.3 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS09730 +0.6 0.9 pyruvate formate lyase 1-activating protein compare
BWI76_RS23335 +0.6 2.6 GNAT family acetyltransferase compare
BWI76_RS11440 +0.6 1.0 hypothetical protein compare
BWI76_RS07185 +0.6 1.3 hypothetical protein compare
BWI76_RS09490 +0.6 1.4 DNA-binding response regulator compare
BWI76_RS16210 +0.6 1.0 hypothetical protein compare
BWI76_RS10380 +0.6 1.8 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS24940 +0.6 2.7 hypothetical protein compare
BWI76_RS19530 +0.6 2.5 YIP1 family protein compare
BWI76_RS02930 +0.5 3.4 anaerobic ribonucleoside-triphosphate reductase activating protein compare
BWI76_RS14035 +0.5 2.1 ABC transporter ATPase compare
BWI76_RS08110 +0.5 1.9 glutamate/aspartate ABC transporter substrate-binding protein compare
BWI76_RS19310 +0.5 1.8 ABC transporter permease compare
BWI76_RS10805 +0.5 2.7 hypothetical protein compare
BWI76_RS09315 +0.5 1.5 hypothetical protein compare
BWI76_RS15295 +0.5 2.1 MDR efflux pump AcrAB transcriptional activator MarA compare
BWI76_RS10530 +0.5 1.7 GntR family transcriptional regulator with compare
BWI76_RS11235 +0.5 0.9 hypothetical protein compare
BWI76_RS09555 +0.5 2.6 pyruvate oxidase compare
BWI76_RS01325 +0.5 1.5 twin-arginine translocase subunit TatB compare
BWI76_RS08780 +0.5 3.4 ABC transporter compare
BWI76_RS13560 +0.5 0.7 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS01095 +0.5 1.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS20795 +0.5 0.9 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS06595 +0.5 1.5 hypothetical protein compare
BWI76_RS20720 +0.5 1.0 hypothetical protein compare
BWI76_RS07995 +0.5 1.2 twin-arginine translocase subunit TatA compare
BWI76_RS26290 +0.5 2.9 glycerol-3-phosphate ABC transporter ATP-binding protein compare
BWI76_RS06885 +0.5 1.1 TonB family protein compare
BWI76_RS14385 +0.5 2.1 hypothetical protein compare
BWI76_RS23130 +0.5 2.8 diol dehydratase reactivase subunit alpha compare
BWI76_RS03665 +0.5 1.3 ABC transporter ATP-binding protein compare
BWI76_RS10770 +0.5 1.2 pyrimidine utilization protein C compare
BWI76_RS14970 +0.5 1.1 pyrroline-5-carboxylate reductase compare
BWI76_RS12965 +0.5 1.5 LysR family transcriptional regulator compare
BWI76_RS14870 +0.5 1.6 hypothetical protein compare
BWI76_RS02885 +0.5 2.6 dihydroorotase compare
BWI76_RS06930 +0.5 2.6 iron export ABC transporter permease subunit FetB compare
BWI76_RS13470 +0.5 1.6 transporter compare
BWI76_RS12985 +0.5 1.1 transcriptional regulator compare
BWI76_RS13490 +0.5 1.4 pyrimidine-specific ribonucleoside hydrolase RihA compare
BWI76_RS11515 +0.5 1.1 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS03190 +0.5 1.9 hypothetical protein compare
BWI76_RS11790 +0.5 1.6 acyl-CoA thioesterase compare
BWI76_RS17970 +0.5 1.3 zinc metalloprotease HtpX compare
BWI76_RS18575 +0.5 0.6 transcriptional regulator compare
BWI76_RS26455 +0.5 2.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS15740 +0.5 0.9 HNH endonuclease compare
BWI76_RS13330 +0.5 1.0 tellurite resistance methyltransferase TehB compare
BWI76_RS11190 +0.5 1.6 putative TetR/AcrR family transcriptional regulatory protein compare
BWI76_RS24470 +0.5 2.8 hypothetical protein compare
BWI76_RS07565 +0.5 2.1 LysE type translocator family protein compare
BWI76_RS10275 +0.5 1.8 ABC transporter compare
BWI76_RS13070 +0.5 1.8 hypothetical protein compare
BWI76_RS16515 +0.5 1.0 LysR family transcriptional regulator compare
BWI76_RS20960 +0.5 1.9 ROK family protein compare
BWI76_RS01805 +0.5 2.0 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase compare
BWI76_RS18620 +0.5 1.7 L,D-transpeptidase compare
BWI76_RS12620 +0.5 1.6 2-nitropropane dioxygenase compare
BWI76_RS14010 +0.5 2.3 SDR family oxidoreductase compare
BWI76_RS04360 +0.5 2.0 ribonucleoside hydrolase RihC compare
BWI76_RS06470 +0.5 0.8 hypothetical protein compare
BWI76_RS19695 +0.5 1.3 membrane protein compare
BWI76_RS15280 +0.5 2.0 sugar transporter compare
BWI76_RS17665 +0.5 1.6 proteasome-type protease compare
BWI76_RS17660 +0.5 1.7 AraC/XylS familytranscription regulator compare
BWI76_RS04815 +0.5 1.3 cell division protein ZapD compare
BWI76_RS09390 +0.5 1.1 phage tail protein compare
BWI76_RS18815 +0.5 1.5 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS01935 +0.5 1.5 thiamin phosphate synthase compare
BWI76_RS14935 +0.5 0.8 NIPSNAP family containing protein compare
BWI76_RS27600 +0.5 1.8 tRNA-Sec compare
BWI76_RS07260 +0.4 2.2 branched chain amino acid ABC transporter substrate-binding protein compare
BWI76_RS09935 +0.4 1.2 paraquat-inducible membrane protein A compare
BWI76_RS05785 +0.4 1.0 CI repressor compare
BWI76_RS16735 +0.4 1.2 cold-shock protein compare
BWI76_RS12715 +0.4 1.9 universal stress protein F compare
BWI76_RS18235 +0.4 1.3 trehalose-phosphatase compare
BWI76_RS16625 +0.4 1.5 putative oxidoreductase compare
BWI76_RS18545 +0.4 1.4 AMP nucleosidase compare
BWI76_RS06190 +0.4 0.8 hypothetical protein compare
BWI76_RS27195 +0.4 2.0 alpha-hydroxy-acid oxidizing enzyme compare
BWI76_RS23005 +0.4 0.7 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS06465 +0.4 0.5 IclR family transcriptional regulator compare
BWI76_RS24150 +0.4 1.7 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
BWI76_RS25380 +0.4 1.5 oxaloacetate decarboxylase subunit beta compare
BWI76_RS10745 +0.4 0.7 hypothetical protein compare
BWI76_RS10740 +0.4 2.3 NAD(P)H:quinone oxidoreductase compare
BWI76_RS02715 +0.4 1.7 putative helix-turn-helix AraC-type transcriptional regulator compare
BWI76_RS27875 +0.4 0.8 membrane protein compare
BWI76_RS16300 +0.4 1.8 bifunctional beta-cystathionase/maltose regulon regulatory protein compare
BWI76_RS02695 +0.4 1.9 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS24070 +0.4 1.0 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS27455 +0.4 1.8 DUF805 domain-containing protein compare
BWI76_RS08585 +0.4 1.0 nicotinamide riboside transporter PnuC compare
BWI76_RS17570 +0.4 1.5 iron-sulfur-binding protein compare
BWI76_RS11455 +0.4 2.0 AraC family transcriptional regulator compare
BWI76_RS24765 +0.4 2.0 membrane protein compare
BWI76_RS20045 +0.4 2.2 hypothetical protein compare
BWI76_RS11335 +0.4 0.8 tautomerase compare
BWI76_RS20750 +0.4 0.6 carboxysome structural protein EutK compare
BWI76_RS21010 +0.4 1.5 Negative regulator of nickel and cobalt uptake (YfgG) (from data) compare
BWI76_RS16325 +0.4 1.6 adenosine deaminase compare
BWI76_RS19100 +0.4 2.2 putative acid phosphatase compare
BWI76_RS00440 +0.4 0.9 CopG family transcriptional regulator compare
BWI76_RS00725 +0.4 1.7 periplasmic repressor CpxP compare
BWI76_RS23955 +0.4 2.0 LysR family transcriptional regulator compare
BWI76_RS09640 +0.4 1.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS05655 +0.4 1.3 hypothetical protein compare
BWI76_RS18695 +0.4 1.2 GntR family transcriptional regulator compare
BWI76_RS11300 +0.4 0.6 cupin compare
BWI76_RS11460 +0.4 1.6 DUF441 family protein compare
BWI76_RS24490 +0.4 2.0 glycerol-3-phosphate acyltransferase compare
BWI76_RS22270 +0.4 1.7 nickel transporter compare
BWI76_RS26030 +0.4 1.5 cytosine deaminase compare
BWI76_RS05860 +0.4 1.8 alkanesulfonates-binding protein compare
BWI76_RS07485 +0.4 2.2 esterase compare
BWI76_RS05990 +0.4 2.2 branched-chain amino acid ABC transporter permease compare
BWI76_RS04975 +0.4 1.0 PTS fructose subfamily transporter subunit IIA compare
BWI76_RS11810 +0.4 0.9 outer membrane protein OmpW compare
BWI76_RS24600 +0.4 1.9 dihydroxyacetone kinase compare
BWI76_RS24630 +0.4 1.3 putrescine aminotransferase compare
BWI76_RS12750 +0.4 2.0 hypothetical protein compare
BWI76_RS20065 +0.4 1.9 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
BWI76_RS03825 +0.4 1.3 4-hydroxyphenylacetate 3-monooxygenase compare
BWI76_RS22505 +0.4 1.9 3-oxoacyl-ACP reductase compare
BWI76_RS11285 +0.4 0.7 transcriptional regulator compare
BWI76_RS12515 +0.4 1.3 protease compare
BWI76_RS26850 +0.4 2.5 cellulose synthase catalytic subunit (UDP-forming) compare
BWI76_RS17850 +0.4 2.2 alginate lyase compare
BWI76_RS06205 +0.4 1.9 recombination-associated protein RdgC compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days across organisms