Experiment set8IT085 for Agrobacterium fabrum C58

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
Atu0031 -4.8 -1.0 PTS system, IIA component compare
Atu1446 -4.2 -1.8 two component response regulator compare
Atu5430 -4.0 -1.5 hypothetical protein compare
Atu0434 -3.4 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1028 -3.4 -1.4 hypothetical protein compare
Atu5540 -3.4 -1.0 hypothetical protein compare
Atu1810 -3.1 -0.9 hypothetical protein compare
Atu1021 -2.9 -1.9 outer membrane protein compare
Atu1845 -2.7 -2.5 phosphoribosylformylglycinamidine synthase I compare
Atu6098 -2.7 -0.8 transcriptional regulator, HTH family compare
Atu8056 -2.6 -0.9 hypothetical protein compare
Atu3740 -2.5 -5.3 fructose bisphosphate aldolase compare
Atu0225 -2.5 -0.7 hypothetical protein compare
Atu1503 -2.4 -1.0 hypothetical protein compare
Atu2787 -2.4 -0.7 hypothetical protein compare
Atu6114 -2.4 -2.5 hypothetical protein compare
Atu4317 -2.3 -2.3 TetR family transcriptional regulator compare
Atu5513 -2.3 -2.2 cold shock protein compare
Atu0041 -2.2 -1.8 glutamine amidotransferase compare
Atu8162 -2.1 -1.2 hypothetical protein compare
Atu0876 -2.1 -1.4 superoxide dismutase compare
Atu3468 -2.1 -0.6 hypothetical protein compare
Atu5125 -2.0 -4.3 GntR family transcriptional regulator compare
Atu3423 -1.9 -1.8 hypothetical protein compare
Atu1140 -1.9 -3.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2439 -1.9 -1.1 hypothetical protein compare
Atu2442 -1.9 -1.7 hypothetical protein compare
Atu6165 -1.9 -1.2 hypothetical protein compare
Atu3712 -1.8 -1.2 hypothetical protein compare
Atu0895 -1.8 -2.4 ABC transporter, substrate binding protein compare
Atu4217 -1.8 -1.2 TetR family transcriptional regulator compare
Atu3598 -1.7 -1.2 thiol:disulfide interchange protein compare
Atu1077 -1.7 -3.6 DNA repair protein compare
Atu0647 -1.7 -3.8 phosphoribosylamine--glycine ligase compare
Atu0422 -1.6 -1.4 ABC transporter, membrane spanning protein compare
Atu2239 -1.6 -1.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0188 -1.5 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu2640 -1.5 -3.1 hypothetical protein compare
Atu4686 -1.5 -1.9 hypothetical protein compare
Atu4451 -1.4 -4.2 mannitol 2-dehydrogenase compare
Atu0486 -1.4 -2.0 dihydroorotate dehydrogenase compare
Atu2057 -1.4 -1.6 DNA helicase II compare
Atu0399 -1.4 -2.9 dihydroorotase compare
Atu1204 -1.4 -3.0 potassium uptake protein compare
Atu3754 -1.4 -3.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1844 -1.4 -1.5 Phosphoribosylformylglycinamidine synthetase compare
Atu1359 -1.4 -0.6 dnaK deletion suppressor protein compare
Atu0184 -1.4 -1.8 glucokinase compare
Atu0322 -1.4 -4.7 enoyl CoA hydratase compare
Atu4773 -1.4 -0.7 two component response regulator compare
Atu3913 -1.4 -4.2 biotin carboxylase compare
Atu1683 -1.3 -1.8 hypothetical protein compare
Atu1527 -1.3 -2.2 nitrogen fixation protein FixS compare
Atu3773 -1.3 -1.9 hypothetical protein compare
Atu1701 -1.3 -1.2 protein-L-isoaspartate O-methyltransferase compare
Atu0999 -1.3 -3.2 magnesium transport protein compare
Atu0502 -1.3 -3.4 acetyl-CoA acetyltransferase compare
Atu5470 -1.3 -1.7 hypothetical protein compare
Atu0189 -1.3 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu4470 -1.2 -2.5 iron ABC transporter ATPase compare
Atu4825 -1.2 -4.0 dehydrogenase compare
Atu2832 -1.2 -1.7 tRNA modification GTPase compare
Atu2052 -1.2 -3.3 hypothetical protein compare
Atu1213 -1.2 -1.7 hypothetical protein compare
Atu2073 -1.2 -1.3 membrane protein compare
Atu1127 -1.2 -1.4 molybdopterin converting factor small subunit compare
Atu1327 -1.2 -1.8 NADH-ubiquinone oxidoreductase compare
Atu0368 -1.2 -3.1 tRNA pseudouridine synthase I compare
Atu3911 -1.2 -3.9 hypothetical protein compare
Atu0190 -1.2 -3.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0026 -1.2 -0.5 hypothetical protein compare
Atu0690 -1.2 -1.5 hypothetical protein compare
Atu3739 -1.2 -1.3 phosphoglycerate kinase compare
Atu0147 -1.2 -2.5 hypothetical protein compare
Atu1030 -1.1 -1.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4468 -1.1 -3.2 iron transport ABC transporter permease compare
Atu3469 -1.1 -1.3 phosphoglyceromutase compare
Atu2135 -1.1 -3.6 transcriptional regulator, TetR family compare
Atu2192 -1.1 -0.7 hypothetical protein compare
Atu2026 -1.1 -3.2 exodeoxyribonuclease V compare
Atu3392 -1.1 -1.5 methyltransferase compare
Atu2728 -1.1 -2.8 beta (1-->2) glucan export ATP-binding protein compare
Atu2141 -1.1 -2.2 hypothetical protein compare
Atu2163 -1.1 -0.8 hypothetical protein compare
Atu3481 -1.1 -2.4 enoyl-CoA hydratase compare
Atu0153 -1.1 -2.2 transcriptional regulator, Fur family compare
Atu3915 -1.1 -2.1 MerR family transcriptional regulator compare
Atu2768 -1.1 -2.8 hypothetical protein compare
Atu4161 -1.1 -1.0 hypothetical protein compare
Atu4187 -1.1 -0.7 tRNA-Met compare
Atu1739 -1.1 -3.3 permease compare
Atu2115 -1.1 -4.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2068 -1.1 -1.8 hypothetical protein compare
Atu2113 -1.1 -1.2 N-acetylmuramoyl-L-alanine amidase compare
Atu0780 -1.1 -4.4 hypothetical protein compare
Atu0167 -1.0 -2.6 transcriptional regulator, AraC family compare
Atu1468 -1.0 -3.9 hypothetical protein compare
Atu3757 -1.0 -1.8 hypothetical protein compare
Atu0769 -1.0 -0.9 protoheme IX farnesyltransferase compare
Atu0977 -1.0 -3.1 serine protease DO-like protease compare
Atu5468 -1.0 -1.6 hypothetical protein compare
Atu2117 -1.0 -2.8 lytic murein transglycosylase compare
Atu1774 -1.0 -3.3 ABC transporter, substrate binding protein (peptide) compare
Atu2237 -1.0 -1.8 cytochrome c1 compare
Atu1874 -1.0 -1.7 RecA protein compare
Atu2083 -1.0 -1.3 DNA repair protein RecN compare
Atu4471 -1.0 -3.9 ABC transporter substrate-binding protein compare
Atu0784 -1.0 -1.3 hypothetical protein compare
Atu1469 -1.0 -1.6 hypothetical protein compare
Atu0361 -1.0 -1.9 transcriptional regulator compare
Atu4505 -1.0 -3.2 LacI family transcriptional regulator compare
Atu0142 -1.0 -1.3 cytochrome o ubiquinol oxidase subunit II compare
Atu1103 -1.0 -1.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0346 -1.0 -1.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0580 -1.0 -1.3 flagellar biosynthetic protein compare
Atu0062 -1.0 -3.1 transcriptional regulator, ROK family compare
Atu2683 -0.9 -0.8 hypothetical protein compare
Atu6131 -0.9 -2.2 TraR Antiactivator compare
Atu4469 -0.9 -2.0 iron ABC transporter permease compare
Atu6138 -0.9 -3.6 Repressor of the acc and arc operons compare
Atu3668 -0.9 -1.4 siderophore biosynthesis protein compare
Atu4616 -0.9 -0.9 dTDP-4-dehydrorhamnose reductase compare
Atu0253 -0.9 -3.9 hypothetical protein compare
Atu2677 -0.9 -2.6 protein tyrosine phosphatase compare
Atu5511 -0.9 -3.5 hypothetical protein compare
Atu0846 -0.9 -2.3 transcriptional regulator, MarR family compare
Atu2456 -0.9 -1.9 lactoylglutathione lyase compare
Atu4099 -0.9 -3.9 hypothetical protein compare
Atu2437 -0.9 -1.6 hypothetical protein compare
Atu8138 -0.9 -0.8 hypothetical protein compare
Atu4077 -0.9 -4.1 glycogen branching protein compare
Atu2495 -0.9 -2.4 flavoprotein oxidoreductase compare
Atu1439 -0.9 -1.1 hypothetical protein compare
Atu0400 -0.9 -1.5 orotate phosphoribosyltransferase compare
Atu1501 -0.9 -2.2 hypothetical protein compare
Atu4824 -0.9 -2.5 IclR family transcriptional regulator compare
Atu0469 -0.9 -2.7 hypothetical protein compare
Atu5045 -0.9 -1.0 hypothetical protein compare
Atu8128 -0.9 -2.6 putative bacteriophage P2 tail protein compare
Atu8039 -0.9 -1.7 hypothetical protein compare
Atu0689 -0.9 -4.5 ribosomal large subunit pseudouridine synthase B compare
Atu0071 -0.9 -3.3 ribonucleoside-diphosphate reductase 2 beta chain compare
Atu1678 -0.9 -2.1 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu5467 -0.9 -1.8 hypothetical protein compare
Atu2304 -0.9 -4.3 bacteroid development protein compare
Atu3162 -0.8 -3.2 LacI family transcriptional regulator compare
Atu2207 -0.8 -1.6 two component sensor kinase compare
Atu5464 -0.8 -4.3 IclR family transcriptional regulator compare
Atu4711 -0.8 -1.9 two component sensor kinase compare
Atu1417 -0.8 -3.5 enoyl-CoA hydratase compare
Atu2682 -0.8 -2.1 hypothetical protein compare
Atu2274 -0.8 -2.4 cation efflux system protein compare
Atu1062 -0.8 -0.8 phosphatidylserine synthase compare
Atu0971 -0.8 -2.0 two component sensor kinase compare
Atu0070 -0.8 -4.2 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu5427 -0.8 -1.8 hypothetical protein compare
Atu3763 -0.8 -0.7 hypothetical protein compare
Atu1291 -0.8 -1.0 hypothetical protein compare
Atu1730 -0.8 -3.1 hypothetical protein compare
Atu5136 -0.8 -2.8 transcriptional repressor of the blcABC operon compare
Atu1141 -0.8 -1.1 Phosphoribosylglycinamide synthetase compare
Atu2464 -0.8 -1.5 formyltetrahydrofolate deformylase compare
Atu0477 -0.8 -0.6 hypothetical protein compare
Atu1254 -0.8 -0.7 transcriptional regulator, ArsR family compare
Atu1968 -0.8 -0.7 hypothetical protein compare
Atu2452 -0.8 -1.4 hypothetical protein compare
Atu4803 -0.8 -2.1 two component response regulator compare
Atu1836 -0.8 -0.9 hypothetical protein compare
Atu2216 -0.8 -3.2 Xaa-Pro dipeptidase compare
Atu8082 -0.8 -0.9 hypothetical protein compare
Atu0809 -0.8 -0.5 hypothetical protein compare
Atu4541 -0.8 -1.6 carboxymuconolactone decarboxylase compare
Atu2204 -0.8 -1.0 hypothetical protein compare
Atu1642 -0.8 -0.8 hypothetical protein compare
Atu0036 -0.7 -1.2 hypothetical protein compare
Atu4753 -0.7 -2.1 amino acid ABC transporter permease compare
Atu1865 -0.7 -1.7 hypothetical protein compare
Atu0660 -0.7 -2.2 hydrolase compare
Atu2432 -0.7 -0.6 hypothetical protein compare
Atu0035 -0.7 -2.6 phosphoenolpyruvate carboxykinase compare
Atu0401 -0.7 -1.6 fructokinase compare
Atu2662 -0.7 -0.6 acetyltransferase compare
Atu5429 -0.7 -1.7 transcriptional regulator compare
Atu4873 -0.7 -2.4 TetR family transcriptional regulator compare
Atu2234 -0.7 -0.9 hypothetical protein compare
Atu4643 -0.7 -1.2 hypothetical protein compare
Atu3277 -0.7 -2.5 nitrilotriacetate monooxygenase compare
Atu0894 -0.7 -1.1 ABC transporter, membrane spanning protein compare
Atu1467 -0.7 -1.9 hypothetical protein compare
Atu2420 -0.7 -2.9 hypothetical protein compare
Atu2238 -0.7 -2.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0520 -0.7 -0.9 chemotaxis receiver protein compare
Atu0237 -0.7 -1.7 hypothetical protein compare
Atu5186 -0.7 -1.0 hypothetical protein compare
Atu0269 -0.7 -1.8 exodeoxyribonuclease VII large subunit compare
Atu1004 -0.7 -1.6 hypothetical protein compare
Atu0559 -0.7 -3.1 hypothetical protein compare
Atu2793 -0.7 -2.1 cobyrinic acid a,c-diamide synthase compare
Atu1644 -0.7 -1.7 hypothetical protein compare
Atu5545 -0.7 -2.7 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment