Experiment set8IT071 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS04465 -7.9 -5.5 carbamoyl-phosphate synthase small subunit compare
BWI76_RS23360 -6.9 -4.4 diaminopimelate decarboxylase compare
BWI76_RS09645 -6.8 -2.3 thioredoxin-disulfide reductase compare
BWI76_RS07070 -6.6 -6.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS26085 -6.4 -3.7 3-dehydroquinate synthase compare
BWI76_RS18950 -6.2 -4.7 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS13920 -6.1 -10.2 magnesium-translocating P-type ATPase compare
BWI76_RS18935 -5.9 -7.3 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04510 -5.8 -3.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS09755 -5.6 -8.3 phosphoserine transaminase compare
BWI76_RS04470 -5.6 -9.0 carbamoyl phosphate synthase large subunit compare
BWI76_RS21475 -5.5 -5.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS01615 -5.5 -11.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS18955 -5.4 -7.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS00965 -5.4 -1.8 acetolactate synthase 2 small subunit compare
BWI76_RS20965 -5.4 -5.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS20895 -5.4 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS18930 -5.3 -5.0 histidinol-phosphate transaminase compare
BWI76_RS01610 -5.1 -7.4 phosphoribosylamine--glycine ligase compare
BWI76_RS18940 -5.1 -3.4 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS08385 -5.0 -5.1 citrate (Si)-synthase compare
BWI76_RS04255 -4.8 -7.8 threonine synthase compare
BWI76_RS00390 -4.6 -6.7 two-component system sensor histidine kinase NtrB compare
BWI76_RS17720 -4.6 -1.6 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS00990 -4.5 -9.3 ketol-acid reductoisomerase compare
BWI76_RS01210 -4.5 -3.1 tyrosine recombinase XerC compare
BWI76_RS18920 -4.5 -4.6 ATP phosphoribosyltransferase compare
BWI76_RS18925 -4.5 -5.8 histidinol dehydrogenase compare
BWI76_RS15115 -4.4 -6.1 MFS transporter compare
BWI76_RS26940 -4.4 -12.3 transcriptional regulator compare
BWI76_RS22755 -4.4 -5.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS23220 -4.3 -7.8 amino-acid N-acetyltransferase compare
BWI76_RS25320 -4.3 -9.2 glutamate synthase compare
BWI76_RS00975 -4.3 -8.0 dihydroxy-acid dehydratase compare
BWI76_RS02735 -4.2 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS11850 -4.2 -10.8 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS03010 -4.2 -7.8 ornithine carbamoyltransferase compare
BWI76_RS21265 -4.2 -11.8 phosphoribosylformylglycinamidine synthase compare
BWI76_RS23240 -4.2 -2.9 exonuclease V subunit gamma compare
BWI76_RS23920 -4.1 -4.4 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS20435 -4.1 -2.0 chorismate synthase compare
BWI76_RS22760 -4.1 -9.0 sulfite reductase subunit beta compare
BWI76_RS07065 -4.1 -7.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS04675 -4.1 -7.6 3-isopropylmalate dehydrogenase compare
BWI76_RS23480 -4.0 -14.4 EAL domain-containing protein compare
BWI76_RS04160 -4.0 -6.5 phosphoserine phosphatase compare
BWI76_RS11965 -4.0 -4.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS11845 -3.9 -4.3 tryptophan synthase subunit beta compare
BWI76_RS04250 -3.9 -6.6 homoserine kinase compare
BWI76_RS26570 -3.9 -5.0 anion permease compare
BWI76_RS04665 -3.9 -17.7 3-isopropylmalate dehydratase small subunit compare
BWI76_RS23365 -3.8 -5.8 LysR family transcriptional regulator compare
BWI76_RS05835 -3.8 -3.7 gamma-glutamyl-phosphate reductase compare
BWI76_RS09635 -3.8 -2.4 amino acid ABC transporter ATP-binding protein compare
BWI76_RS00980 -3.8 -8.6 PLP-dependent threonine dehydratase compare
BWI76_RS20350 -3.8 -7.1 amidophosphoribosyltransferase compare
BWI76_RS01655 -3.8 -6.2 homoserine O-succinyltransferase compare
BWI76_RS04670 -3.7 -6.5 3-isopropylmalate dehydratase large subunit compare
BWI76_RS25315 -3.7 -9.0 glutamate synthase large subunit compare
BWI76_RS24285 -3.7 -7.4 cystathionine beta-lyase compare
BWI76_RS23265 -3.7 -4.3 hypothetical protein compare
BWI76_RS22765 -3.7 -9.0 sulfite reductase subunit alpha compare
BWI76_RS11840 -3.7 -6.3 tryptophan synthase subunit alpha compare
BWI76_RS04245 -3.6 -11.6 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00785 -3.6 -7.2 cystathionine gamma-synthase compare
BWI76_RS11855 -3.6 -7.9 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS00855 -3.6 -5.2 argininosuccinate lyase compare
BWI76_RS00850 -3.6 -6.9 acetylglutamate kinase compare
BWI76_RS09660 -3.5 -2.4 DNA translocase FtsK compare
BWI76_RS25115 -3.5 -7.1 argininosuccinate synthase compare
BWI76_RS11860 -3.4 -6.1 anthranilate synthase component I compare
BWI76_RS00805 -3.4 -3.8 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS00845 -3.3 -9.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00385 -3.3 -6.8 nitrogen assimilation regulatory protein compare
BWI76_RS20355 -3.1 -5.0 colicin V production protein compare
BWI76_RS06765 -3.1 -3.9 transcriptional regulator compare
BWI76_RS25645 -3.1 -7.9 shikimate dehydrogenase compare
BWI76_RS05840 -3.1 -6.4 glutamate 5-kinase compare
BWI76_RS23230 -3.0 -3.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS04240 -3.0 -2.0 thr operon leader peptide compare
BWI76_RS04685 -3.0 -9.7 putative leucine operon leader peptide compare
BWI76_RS05120 -2.8 -7.8 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS00960 -2.8 -5.1 acetolactate synthase 2 catalytic subunit compare
BWI76_RS20650 -2.8 -3.2 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS27385 -2.7 -8.0 orotate phosphoribosyltransferase compare
BWI76_RS04680 -2.7 -6.7 2-isopropylmalate synthase compare
BWI76_RS19840 -2.7 -1.6 hypothetical protein compare
BWI76_RS01350 -2.6 -1.6 NAD(P)H-flavin reductase compare
BWI76_RS06525 -2.6 -6.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS09910 -2.6 -12.5 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS21465 -2.6 -1.7 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS02995 -2.4 -6.8 aspartate carbamoyltransferase compare
BWI76_RS10990 -2.4 -3.9 dihydroorotase compare
BWI76_RS00180 -2.4 -1.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS09760 -2.4 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS06530 -2.3 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS05070 -2.3 -2.6 type II secretion system protein GspH compare
BWI76_RS05015 -2.3 -1.7 transcriptional regulator compare
BWI76_RS20360 -2.3 -1.5 cell division protein DedD compare
BWI76_RS05200 -2.3 -2.7 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS26055 -2.2 -5.4 siroheme synthase compare
BWI76_RS01275 -2.2 -4.5 LysR family transcriptional regulator compare
BWI76_RS00345 -2.2 -3.7 protein disulfide oxidoreductase DsbA compare
BWI76_RS02530 -2.2 -1.9 tRNA dimethylallyltransferase compare
BWI76_RS25000 -2.2 -2.0 malonate decarboxylase acyl carrier protein compare
BWI76_RS04645 -2.2 -3.1 3-dehydroquinase compare
BWI76_RS27305 -2.2 -7.1 glycosyl transferase compare
BWI76_RS26425 -2.1 -9.1 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS15225 -2.1 -2.9 DeoR family transcriptional regulator compare
BWI76_RS00400 -2.1 -1.4 glutamine synthetase compare
BWI76_RS00985 -2.0 -6.2 transcriptional regulator IlvY compare
BWI76_RS00835 -2.0 -7.5 phosphoenolpyruvate carboxylase compare
BWI76_RS22690 -2.0 -3.5 adenylyl-sulfate kinase compare
BWI76_RS15350 -1.9 -1.7 hypothetical protein compare
BWI76_RS24850 -1.9 -5.4 DeoR family transcriptional regulator compare
BWI76_RS13915 -1.9 -3.7 magnesium transport protein MgtC compare
BWI76_RS22695 -1.8 -5.0 sulfate adenylyltransferase compare
BWI76_RS26000 -1.8 -5.8 aspartate aminotransferase family protein compare
BWI76_RS16535 -1.8 -6.2 MATE family efflux transporter conserved
BWI76_RS23055 -1.8 -3.2 cobalamin biosynthesis protein CbiG compare
BWI76_RS17975 -1.7 -2.8 tail-specific protease compare
BWI76_RS15825 -1.7 -1.8 hypothetical protein compare
BWI76_RS22805 -1.7 -7.5 GTP diphosphokinase compare
BWI76_RS06770 -1.7 -6.9 Hha toxicity attenuator compare
BWI76_RS26395 -1.6 -3.0 cell division protein FtsE compare
BWI76_RS19845 -1.6 -4.9 phosphatase compare
BWI76_RS08500 -1.5 -4.0 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS23070 -1.5 -5.4 cobalt-precorrin-7 (C(5))-methyltransferase compare
BWI76_RS17980 -1.5 -2.3 RNA chaperone ProQ compare
BWI76_RS17370 -1.5 -2.2 nitrate transporter NasD compare
BWI76_RS08210 -1.5 -2.3 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS01870 -1.5 -4.2 diacylglycerol kinase compare
BWI76_RS13595 -1.4 -3.3 transcriptional regulator compare
BWI76_RS22705 -1.4 -5.6 siroheme synthase compare
BWI76_RS24025 -1.4 -5.9 agmatinase compare
BWI76_RS15110 -1.4 -7.6 putative excinuclease ABC subunit A compare
BWI76_RS04525 -1.4 -1.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS04705 -1.3 -4.3 DNA-binding transcriptional regulator FruR compare
BWI76_RS20380 -1.3 -1.1 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS18715 -1.3 -4.6 hypothetical protein compare
BWI76_RS09640 -1.3 -2.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS18710 -1.2 -7.8 GGDEF-domain containing protein compare
BWI76_RS25505 -1.2 -5.4 RNase E specificity factor CsrD compare
BWI76_RS25700 -1.2 -6.5 heavy metal-responsive transcriptional regulator compare
BWI76_RS08530 -1.2 -2.5 protein TolA compare
BWI76_RS17365 -1.2 -7.0 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
BWI76_RS27165 -1.2 -2.5 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS16485 -1.2 -1.8 ribonuclease T compare
BWI76_RS11155 -1.2 -2.4 penicillin-binding protein activator LpoB compare
BWI76_RS20440 -1.2 -1.7 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS25480 -1.2 -3.9 ribonuclease E/G compare
BWI76_RS01200 -1.2 -1.4 diaminopimelate epimerase compare
BWI76_RS22125 -1.2 -1.8 membrane protein compare
BWI76_RS17385 -1.1 -5.0 nitrate regulatory protein compare
BWI76_RS25600 -1.1 -0.9 tRNA-Thr compare
BWI76_RS13545 -1.1 -1.3 N-acetyltransferase compare
BWI76_RS20940 -1.1 -2.5 uracil/xanthine transporter compare
BWI76_RS23485 -1.1 -5.0 hypothetical protein compare
BWI76_RS15840 -1.1 -1.8 prophage protein compare
BWI76_RS15850 -1.1 -0.6 DUF1317 domain-containing protein compare
BWI76_RS13955 -1.1 -2.2 hypothetical protein compare
BWI76_RS06535 -1.1 -2.8 endopeptidase La compare
BWI76_RS25065 -1.1 -2.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS17380 -1.1 -2.3 nitrate transporter component compare
BWI76_RS08645 -1.1 -2.1 molybdate ABC transporter substrate-binding protein compare
BWI76_RS21075 -1.1 -1.1 membrane protein compare
BWI76_RS14075 -1.1 -1.6 TetR family transcriptional regulator compare
BWI76_RS24635 -1.1 -2.5 autoinducer-2 (AI-2) modifying protein LsrG compare
BWI76_RS26775 -1.0 -2.1 endo-1,4-D-glucanase compare
BWI76_RS12460 -1.0 -2.7 envelope stress response membrane protein PspC compare
BWI76_RS15835 -1.0 -0.9 hypothetical protein compare
BWI76_RS09655 -1.0 -3.1 leucine-responsive regulatory protein compare
BWI76_RS21140 -1.0 -2.2 molecular chaperone HscA compare
BWI76_RS20640 -1.0 -2.7 cysteine synthase A compare
BWI76_RS09765 -1.0 -2.5 metalloprotease compare
BWI76_RS20050 -1.0 -1.2 hypothetical protein compare
BWI76_RS11255 -1.0 -1.2 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS24585 -1.0 -2.2 glycerol dehydrogenase compare
BWI76_RS26200 -1.0 -2.7 starch synthase compare
BWI76_RS02855 -1.0 -1.0 cytochrome B562 compare
BWI76_RS13180 -1.0 -2.4 multidrug transporter EmrA compare
BWI76_RS17375 -1.0 -2.1 nitrate ABC transporter, permease protein compare
BWI76_RS07865 -1.0 -2.3 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS11105 -1.0 -1.3 aminodeoxychorismate lyase compare
BWI76_RS17300 -1.0 -1.1 tRNA-Tyr compare
BWI76_RS04305 -1.0 -0.8 molecular chaperone DnaJ compare
BWI76_RS15060 -1.0 -1.9 MarR family transcriptional regulator compare
BWI76_RS19495 -1.0 -1.0 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS00720 -1.0 -1.8 DNA-binding response regulator compare
BWI76_RS06675 -1.0 -4.7 nickel/cobalt efflux protein RcnA compare
BWI76_RS27390 -0.9 -2.0 ribonuclease PH compare
BWI76_RS09240 -0.9 -2.7 phosphoadenosine phosphosulfate reductase compare
BWI76_RS14050 -0.9 -2.0 AP endonuclease, family 2 compare
BWI76_RS01280 -0.9 -4.7 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS25335 -0.9 -2.1 stringent starvation protein A compare
BWI76_RS08495 -0.9 -2.6 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS06485 -0.9 -1.4 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS21370 -0.9 -1.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS17525 -0.9 -1.5 XshC-Cox1-family protein compare
BWI76_RS22955 -0.9 -2.2 transcriptional regulator GcvA compare


Specific Phenotypes

For 4 genes in this experiment

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms