Experiment set8IT069 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS08210 +2.0 6.0 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS03595 +1.5 1.1 ethanolamine utilization protein EutM compare
BWI76_RS18385 +1.5 2.1 hypothetical protein compare
BWI76_RS00480 +1.4 4.6 hypothetical protein compare
BWI76_RS27875 +1.4 1.0 membrane protein compare
BWI76_RS16805 +1.4 2.7 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS16895 +1.4 2.3 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS22095 +1.3 4.1 multidrug export protein EmrA compare
BWI76_RS17470 +1.3 3.5 MerR family transcriptional regulator compare
BWI76_RS08975 +1.3 2.2 amino acid ABC transporter substrate-binding protein compare
BWI76_RS01585 +1.3 6.2 transcriptional regulator compare
BWI76_RS08380 +1.3 1.4 endonuclease VIII compare
BWI76_RS14065 +1.3 1.5 hypothetical protein compare
BWI76_RS12465 +1.3 1.7 phage shock protein D compare
BWI76_RS13215 +1.2 2.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS11675 +1.2 2.3 arginine N-succinyltransferase compare
BWI76_RS11155 +1.2 3.5 penicillin-binding protein activator LpoB compare
BWI76_RS15015 +1.2 1.9 DUF2132 domain-containing protein compare
BWI76_RS20730 +1.2 2.1 hypothetical protein compare
BWI76_RS14665 +1.2 4.1 minor fimbrial subunit YfcQ compare
BWI76_RS07475 +1.1 1.3 DNA-binding transcriptional regulator RamA compare
BWI76_RS08545 +1.1 3.4 cell division protein CpoB compare
BWI76_RS15920 +1.1 1.9 hypothetical protein compare
BWI76_RS16455 +1.1 2.0 superoxide dismutase compare
BWI76_RS08750 +1.1 1.5 kinase inhibitor compare
BWI76_RS17045 +1.1 1.7 hypothetical protein compare
BWI76_RS06375 +1.1 3.5 oxidoreductase compare
BWI76_RS18770 +1.1 1.3 DNA gyrase inhibitor compare
BWI76_RS18175 +1.1 1.8 hydrolase compare
BWI76_RS10815 +1.1 3.5 iron permease compare
BWI76_RS25380 +1.1 2.4 oxaloacetate decarboxylase subunit beta compare
BWI76_RS24765 +1.1 3.4 membrane protein compare
BWI76_RS21675 +1.0 1.4 hypothetical protein compare
BWI76_RS05075 +1.0 1.0 type II secretion system protein GspG compare
BWI76_RS15260 +1.0 1.7 hypothetical protein compare
BWI76_RS00715 +1.0 2.2 two-component sensor histidine kinase compare
BWI76_RS03015 +1.0 3.0 RNase E inhibitor protein compare
BWI76_RS17525 +1.0 1.6 XshC-Cox1-family protein compare
BWI76_RS14775 +1.0 2.1 creatinine amidohydrolase compare
BWI76_RS18335 +1.0 4.4 DNA-binding response regulator compare
BWI76_RS24575 +1.0 1.0 hypothetical protein compare
BWI76_RS20940 +1.0 1.5 uracil/xanthine transporter compare
BWI76_RS19700 +1.0 1.4 deoxyribonuclease IV compare
BWI76_RS12825 +1.0 2.2 hypothetical protein compare
BWI76_RS16950 +1.0 2.0 TetR family transcriptional regulator compare
BWI76_RS11780 +1.0 2.2 2-deoxyglucose-6-phosphatase compare
BWI76_RS00640 +0.9 0.8 L-rhamnose mutarotase compare
BWI76_RS02745 +0.9 1.2 hypothetical protein compare
BWI76_RS22515 +0.9 2.8 acyl dehydratase compare
BWI76_RS05885 +0.9 3.1 anion permease compare
BWI76_RS10500 +0.9 1.9 flavoprotein monooxygenase compare
BWI76_RS09820 +0.9 3.5 hypothetical protein compare
BWI76_RS08585 +0.9 3.4 nicotinamide riboside transporter PnuC compare
BWI76_RS18090 +0.9 2.6 phosphoribosylglycinamide formyltransferase 2 compare
BWI76_RS24240 +0.9 1.6 hypothetical protein compare
BWI76_RS26470 +0.9 3.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS14740 +0.9 2.5 LysR family transcriptional regulator compare
BWI76_RS11200 +0.9 1.8 transpeptidase compare
BWI76_RS02860 +0.9 1.3 glycine dehydrogenase compare
BWI76_RS16935 +0.9 1.1 shikimate dehydrogenase compare
BWI76_RS07820 +0.9 1.7 S-methyl-5-thioribose kinase compare
BWI76_RS08310 +0.9 1.6 potassium-transporting ATPase subunit C compare
BWI76_RS22215 +0.9 2.6 PTS sorbitol transporter subunit IIC compare
BWI76_RS22815 +0.9 4.4 hybrid sensor histidine kinase/response regulator compare
BWI76_RS19520 +0.9 4.0 acetyltransferase GCN5 compare
BWI76_RS20675 +0.9 1.7 GMP synthase compare
BWI76_RS13575 +0.9 1.7 sugar binding transcriptional regulator, LacI family protein compare
BWI76_RS07675 +0.9 2.2 DeoR family transcriptional regulator compare
BWI76_RS07995 +0.9 1.6 twin-arginine translocase subunit TatA compare
BWI76_RS23560 +0.9 1.7 hypothetical protein compare
BWI76_RS21445 +0.9 2.3 hypothetical protein compare
BWI76_RS21375 +0.9 0.8 autonomous glycyl radical cofactor GrcA compare
BWI76_RS00680 +0.9 4.1 Rhamnulokinase (EC 2.7.1.5) (from data) compare
BWI76_RS14490 +0.8 2.3 ABC transporter substrate-binding protein compare
BWI76_RS15215 +0.8 1.0 N-acetyltransferase compare
BWI76_RS11900 +0.8 1.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS01030 +0.8 2.4 cytosine/purine, uracil, thiamine, allantoin permease family protein compare
BWI76_RS10770 +0.8 2.2 pyrimidine utilization protein C compare
BWI76_RS11810 +0.8 1.2 outer membrane protein OmpW compare
BWI76_RS18390 +0.8 1.3 hypothetical protein compare
BWI76_RS23705 +0.8 2.8 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS11600 +0.8 2.4 selenide, water dikinase SelD compare
BWI76_RS01565 +0.8 1.2 NADH pyrophosphatase compare
BWI76_RS20465 +0.8 2.6 hypothetical protein compare
BWI76_RS16515 +0.8 1.3 LysR family transcriptional regulator compare
BWI76_RS14865 +0.8 3.7 ribose ABC transporter permease compare
BWI76_RS10855 +0.8 2.1 RND family efflux transporter MFP subunit compare
BWI76_RS25700 +0.8 3.6 heavy metal-responsive transcriptional regulator compare
BWI76_RS13330 +0.8 1.3 tellurite resistance methyltransferase TehB compare
BWI76_RS16860 +0.8 2.1 acyl-CoA dehydrogenase compare
BWI76_RS19770 +0.8 1.5 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS01270 +0.8 2.3 hypothetical protein compare
BWI76_RS15970 +0.8 2.3 carboxypeptidase M32 compare
BWI76_RS06200 +0.8 1.6 hypothetical protein compare
BWI76_RS16900 +0.8 2.1 4-hydroxy-2-oxovalerate aldolase compare
BWI76_RS02560 +0.8 3.2 membrane protein compare
BWI76_RS05050 +0.8 1.3 general secretion pathway protein GspL compare
BWI76_RS26515 +0.8 3.7 nickel import ATP-binding protein NikD compare
BWI76_RS01110 +0.8 2.9 TDP-fucosamine acetyltransferase compare
BWI76_RS24490 +0.8 1.7 glycerol-3-phosphate acyltransferase compare
BWI76_RS21485 +0.8 4.3 DUF4154 domain-containing protein compare
BWI76_RS17765 +0.8 0.7 hypothetical protein compare
BWI76_RS00725 +0.8 2.0 periplasmic repressor CpxP compare
BWI76_RS19325 +0.8 1.2 mandelate racemase compare
BWI76_RS11610 +0.8 1.3 glutamate dehydrogenase compare
BWI76_RS05645 +0.8 2.3 fructuronate reductase compare
BWI76_RS15445 +0.8 1.6 hypothetical protein compare
BWI76_RS27050 +0.7 3.2 hypothetical protein compare
BWI76_RS16760 +0.7 2.0 lipase compare
BWI76_RS27745 +0.7 1.4 PTS sugar transporter subunit IIB compare
BWI76_RS22960 +0.7 2.0 YgdI/YgdR family lipoprotein compare
BWI76_RS09145 +0.7 1.4 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS06335 +0.7 1.0 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS07165 +0.7 1.4 hypothetical protein compare
BWI76_RS13025 +0.7 1.4 histidine phosphatase family protein compare
BWI76_RS14350 +0.7 3.4 hypothetical protein compare
BWI76_RS16765 +0.7 3.2 spermidine/putrescine ABC transporter permease compare
BWI76_RS02795 +0.7 3.3 periplasmic binding protein/LacI transcriptional regulator compare
BWI76_RS26910 +0.7 3.0 hypothetical protein compare
BWI76_RS10465 +0.7 1.6 hypothetical protein compare
BWI76_RS07640 +0.7 1.3 short chain dehydrogenase compare
BWI76_RS10910 +0.7 1.7 hypothetical protein compare
BWI76_RS09560 +0.7 1.2 DoxX family membrane protein compare
BWI76_RS24070 +0.7 1.9 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS14390 +0.7 1.0 hypothetical protein compare
BWI76_RS13585 +0.7 2.6 4-oxalocrotonate tautomerase compare
BWI76_RS11710 +0.7 2.8 nucleotide excision repair endonuclease compare
BWI76_RS24330 +0.7 2.4 TIGR00156 family protein compare
BWI76_RS05235 +0.7 0.8 hypothetical protein compare
BWI76_RS15860 +0.7 1.5 adenine-specific DNA methyltransferase compare
BWI76_RS02725 +0.7 0.7 HxlR family transcriptional regulator compare
BWI76_RS16190 +0.7 2.6 universal stress protein UspE compare
BWI76_RS24180 +0.7 1.5 hypothetical protein compare
BWI76_RS24110 +0.7 1.3 YggU family protein compare
BWI76_RS17325 +0.7 2.1 nitrate reductase molybdenum cofactor assembly chaperone compare
BWI76_RS10955 +0.7 1.2 hypothetical protein compare
BWI76_RS20750 +0.7 0.7 carboxysome structural protein EutK compare
BWI76_RS00510 +0.7 3.2 glucuronyl hydrolase compare
BWI76_RS12040 +0.7 0.9 hypothetical protein compare
BWI76_RS05500 +0.7 2.0 NADH:ubiquinone reductase (Na(+)-transporting) subunit C compare
BWI76_RS07375 +0.7 2.0 dehydrogenase compare
BWI76_RS22475 +0.7 0.9 heme ABC transporter ATP-binding protein compare
BWI76_RS14850 +0.7 2.6 LacI family transcriptional regulator compare
BWI76_RS06795 +0.7 1.8 hypothetical protein compare
BWI76_RS20330 +0.7 1.5 histidine/lysine/arginine/ornithine ABC transporter permease HisQ compare
BWI76_RS14015 +0.7 1.8 L-2,4-diaminobutyrate decarboxylase compare
BWI76_RS06290 +0.7 1.2 ACP phosphodiesterase compare
BWI76_RS09720 +0.7 1.7 PTS ascorbate transporter subunit IIB compare
BWI76_RS13180 +0.7 1.4 multidrug transporter EmrA compare
BWI76_RS01835 +0.7 1.5 chemotaxis protein CheW compare
BWI76_RS03995 +0.7 1.3 hypothetical protein compare
BWI76_RS12225 +0.7 1.6 hypothetical protein compare
BWI76_RS08395 +0.7 1.1 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS12085 +0.7 1.9 regulatory protein CII from bacteriophage origin compare
BWI76_RS11765 +0.7 2.2 bifunctional transporter/kinase compare
BWI76_RS17345 +0.7 2.1 nitrate/nitrite two-component system sensor histidine kinase NarX compare
BWI76_RS07605 +0.7 1.7 N-acetyltransferase GCN5 compare
BWI76_RS07805 +0.7 1.0 sugar ABC transporter permease compare
BWI76_RS23470 +0.7 4.5 hypothetical protein compare
BWI76_RS24825 +0.7 0.7 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS20130 +0.7 2.4 NADH-quinone oxidoreductase subunit N compare
BWI76_RS10820 +0.7 1.0 iron uptake system protein EfeO compare
BWI76_RS05800 +0.6 1.1 phage transcriptional activator, Ogr/delta compare
BWI76_RS03805 +0.6 1.7 porin compare
BWI76_RS00270 +0.6 3.6 D-ribose pyranase (EC 5.4.99.62) (from data) compare
BWI76_RS23760 +0.6 0.9 tRNA-Gly compare
BWI76_RS14460 +0.6 1.0 MurR/RpiR family transcriptional regulator compare
BWI76_RS07740 +0.6 1.0 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS04095 +0.6 1.6 dUMP phosphatase compare
BWI76_RS14000 +0.6 2.0 glutamine amidotransferase compare
BWI76_RS26890 +0.6 0.9 hypothetical protein compare
BWI76_RS08725 +0.6 2.1 Formiminoglutamase (EC 3.5.3.8) (from data) compare
BWI76_RS11250 +0.6 0.9 spermidine/putrescine ABC transporter permease PotB compare
BWI76_RS20540 +0.6 2.2 NupC/NupG family nucleoside CNT transporter compare
BWI76_RS18915 +0.6 0.9 NAD(P)-dependent oxidoreductase compare
BWI76_RS20925 +0.6 1.9 peptidase M48 compare
BWI76_RS11345 +0.6 1.9 LysR family transcriptional regulator compare
BWI76_RS13820 +0.6 1.3 hypothetical protein compare
BWI76_RS02800 +0.6 1.2 ABC transporter compare
BWI76_RS13685 +0.6 1.4 IclR family transcriptional regulator compare
BWI76_RS21380 +0.6 1.9 uracil-DNA glycosylase compare
BWI76_RS15190 +0.6 1.9 GGDEF domain-containing protein compare
BWI76_RS07880 +0.6 2.5 PfkB domain-containing protein compare
BWI76_RS15605 +0.6 1.1 hypothetical protein compare
BWI76_RS16845 +0.6 1.7 ABC transporter permease compare
BWI76_RS15330 +0.6 1.6 urea ABC transporter permease subunit UrtC compare
BWI76_RS09535 +0.6 2.5 N-acetylmuramoyl-L-alanine amidase amid compare
BWI76_RS05005 +0.6 1.3 polynucleotide adenylyltransferase compare
BWI76_RS26920 +0.6 1.3 DNA-3-methyladenine glycosylase I compare
BWI76_RS25955 +0.6 1.7 ribose-phosphate pyrophosphokinase compare
BWI76_RS21235 +0.6 0.7 hypothetical protein compare
BWI76_RS19835 +0.6 2.3 nucleoid-associated protein YejK compare
BWI76_RS08605 +0.6 1.2 phosphoglyceromutase compare
BWI76_RS12870 +0.6 1.3 putative phytanoyl-CoA dioxygenase compare
BWI76_RS13610 +0.6 2.2 sugar transporter compare
BWI76_RS18630 +0.6 1.6 nitrogen assimilation transcriptional regulator compare
BWI76_RS23670 +0.6 1.4 alkaline phosphatase compare
BWI76_RS27760 +0.6 1.4 lactam utilization protein LamB compare
BWI76_RS03185 +0.6 0.9 CI repressor compare
BWI76_RS16660 +0.6 1.6 SfnB family sulfur acquisition oxidoreductase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms