Experiment set8IT046 for Pseudomonas syringae pv. syringae B728a

Compare to:

library passed through aphids in food, 72 hours

200 most important genes:

  gene name fitness t score description  
Psyr_4882 -5.2 -7.9 protein translocase subunit secB compare
Psyr_1269 -5.1 -3.5 phosphoribosylformylglycinamidine synthase compare
Psyr_1668 -5.1 -7.8 amidophosphoribosyltransferase compare
Psyr_4567 -5.1 -7.0 Protein of unknown function UPF0075 compare
Psyr_4622 -5.0 -4.9 Nucleotidyl transferase compare
Psyr_1056 -4.2 -4.9 Poly(beta-D-mannuronate) lyase compare
Psyr_3475 -4.2 -4.5 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_4512 -4.1 -4.8 putative phage-related protein compare
Psyr_3886 -4.0 -2.7 methionyl-tRNA synthetase compare
Psyr_0215 -3.8 -13.5 Exodeoxyribonuclease III xth compare
Psyr_0531 -3.7 -3.0 LmbE-like protein compare
Psyr_3473 -3.7 -2.9 Flagellar P-ring protein compare
Psyr_4407 -3.7 -3.4 phosphoribosylamine--glycine ligase compare
Psyr_3690 -3.6 -6.0 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_1247 -3.6 -3.1 conserved hypothetical protein compare
Psyr_4754 -3.5 -2.7 16S rRNA m(2)G-966 methyltransferase compare
Psyr_3673 -3.4 -2.6 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_0557 -3.4 -7.7 phosphoserine phosphatase compare
Psyr_3463 -3.3 -5.0 Flagellar protein FliS compare
Psyr_4078 -3.3 -13.8 AmpG-related permease compare
Psyr_3675 -3.3 -4.4 adenosylcobinamide kinase compare
Psyr_0255 -3.3 -3.3 glutamate-cysteine ligase compare
Psyr_3193 -3.2 -3.1 Transcription factor jumonji, jmjC compare
Psyr_3202 -3.2 -3.1 NADH dehydrogenase subunit G compare
Psyr_3487 -3.2 -7.4 flagellar protein FlgA compare
Psyr_3805 -3.2 -3.6 hypothetical protein compare
Psyr_1410 -3.1 -5.7 Holliday junction DNA helicase RuvB compare
Psyr_0014 -3.1 -3.7 lipid A biosynthesis acyltransferase compare
Psyr_0402 -3.1 -14.1 Peptidoglycan glycosyltransferase compare
Psyr_0487 -3.0 -4.0 glutathione synthase compare
Psyr_1983 -3.0 -5.8 3-isopropylmalate dehydratase, large subunit compare
Psyr_3446 -3.0 -1.8 Surface presentation of antigens (SPOA) protein compare
Psyr_1614 -3.0 -3.8 lipid A biosynthesis acyltransferase compare
Psyr_2897 -3.0 -7.2 regulatory protein, LuxR:Response regulator receiver compare
Psyr_3199 -3.0 -4.5 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_3447 -3.0 -5.9 Flagellar motor switch protein FliM compare
Psyr_3449 -2.9 -4.7 Flagellar hook-length control protein compare
Psyr_1985 -2.9 -11.2 3-isopropylmalate dehydrogenase compare
Psyr_3425 -2.9 -3.1 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_0111 -2.9 -8.8 hypothetical protein compare
Psyr_3676 -2.9 -4.7 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_3672 -2.9 -3.3 cobalamin-5'-phosphate synthase compare
Psyr_4270 -2.9 -5.9 serine hydroxymethyltransferase compare
Psyr_5065 -2.8 -9.1 ATP-dependent DNA helicase UvrD compare
Psyr_3435 -2.8 -5.0 chemotaxis phosphatase, CheZ compare
Psyr_0529 -2.8 -5.7 Glycosyl transferase, group 1 compare
Psyr_1748 -2.8 -6.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_1408 -2.8 -2.9 Holliday junction endonuclease RuvC compare
Psyr_3458 -2.7 -2.3 Flagellar hook-basal body complex protein FliE compare
Psyr_3701 -2.7 -3.3 thioredoxin, putative compare
Psyr_4623 -2.6 -10.9 Aminoglycoside phosphotransferase compare
Psyr_4894 -2.5 -6.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_3469 -2.5 -9.0 Glycosyl transferase, family 2 compare
Psyr_1645 -2.5 -4.4 phosphate:acyl-[acyl carrier protein] acyltransferase compare
Psyr_3281 -2.5 -3.1 Glycoside hydrolase, family 3, N-terminal compare
Psyr_3443 -2.4 -5.5 Flagellar biosynthesis protein FliQ compare
Psyr_2464 -2.4 -7.6 methionine synthase (B12-dependent) compare
Psyr_3698 -2.4 -3.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4414 -2.4 -6.7 precorrin-3 methyltransferase compare
Psyr_3453 -2.4 -5.4 flagellar protein FliJ, putative compare
Psyr_3808 -2.4 -0.8 hypothetical protein compare
Psyr_3461 -2.4 -9.0 Helix-turn-helix, Fis-type compare
Psyr_3485 -2.4 -7.6 MCP methyltransferase, CheR-type compare
Psyr_3476 -2.4 -2.5 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_0378 -2.3 -9.3 Glycosyl transferase, family 2 compare
Psyr_3436 -2.3 -5.8 Response regulator receiver compare
Psyr_3691 -2.3 -6.4 conserved hypothetical protein compare
Psyr_1633 -2.3 -1.8 MotA/TolQ/ExbB proton channel compare
Psyr_3470 -2.2 -10.5 Flagellin, N-terminal compare
Psyr_1747 -2.2 -3.5 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_3456 -2.2 -6.0 Flagellar motor switch protein FliG compare
Psyr_0562 -2.2 -5.7 OmpA/MotB compare
Psyr_1984 -2.2 -4.6 3-isopropylmalate dehydratase, small subunit compare
Psyr_3013 -2.2 -2.0 magnesium chelatase subunit ChlD compare
Psyr_0534 -2.2 -12.0 membrane protein, putative compare
Psyr_0576 -2.2 -4.8 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_4158 -2.2 -6.6 conserved hypothetical protein compare
Psyr_4415 -2.2 -8.2 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase compare
Psyr_4991 -2.1 -2.3 hypothetical protein compare
Psyr_3440 -2.1 -8.6 Flagellar biosynthesis protein FlhA compare
Psyr_3480 -2.1 -2.5 Flagellar basal-body rod protein FlgC compare
Psyr_5036 -2.1 -2.6 Response regulator receiver compare
Psyr_5067 -2.1 -6.1 conserved hypothetical protein compare
Psyr_4141 -2.1 -5.3 ABC transporter compare
Psyr_3437 -2.0 -7.4 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
Psyr_3472 -2.0 -7.3 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase compare
Psyr_0822 -2.0 -0.9 1-phosphofructokinase compare
Psyr_4194 -2.0 -4.1 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_4015 -2.0 -2.1 conserved domain protein compare
Psyr_3637 -2.0 -7.8 Glycosyl transferase, family 4 compare
Psyr_3441 -2.0 -6.9 Flagellar biosynthetic protein FlhB compare
Psyr_2312 -2.0 -1.3 Protein of unknown function DUF24 compare
Psyr_3681 -2.0 -2.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_0383 -2.0 -1.9 Twin-arginine translocation protein TatB compare
Psyr_3893 -1.9 -6.5 OmpA/MotB compare
Psyr_3428 -1.9 -5.1 CheW-like protein compare
Psyr_2031 -1.9 -3.2 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_4852 -1.9 -5.5 D-3-phosphoglycerate dehydrogenase compare
Psyr_3481 -1.9 -4.0 Flagellar basal-body rod protein FlgB compare
Psyr_4897 -1.9 -3.5 imidazoleglycerol-phosphate dehydratase compare
Psyr_3439 -1.9 -5.1 GTP-binding signal recognition particle SRP54, G-domain protein compare
Psyr_0377 -1.9 -5.1 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_3462 -1.8 -2.4 conserved hypothetical protein compare
Psyr_4896 -1.8 -4.5 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_0167 -1.8 -2.7 hypothetical protein compare
Psyr_3678 -1.8 -4.6 adenosylcobinamide-phosphate synthase compare
Psyr_1373 -1.8 -3.2 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3090 -1.8 -2.6 hypothetical protein compare
Psyr_0291 -1.8 -5.1 DedA compare
Psyr_0549 -1.8 -1.8 Metallophosphoesterase compare
Psyr_3445 -1.8 -2.4 Flagellar biosynthesis protein, FliO compare
Psyr_3324 -1.8 -3.4 transcriptional regulator, TetR family compare
Psyr_0535 -1.8 -2.6 toluene tolerance protein, putative compare
Psyr_0386 -1.7 -5.2 phosphoribosyl-AMP cyclohydrolase compare
Psyr_4408 -1.7 -6.4 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_1749 -1.7 -6.6 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_3307 -1.7 -8.2 Glycosyl transferase, group 1 compare
Psyr_4893 -1.7 -1.5 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1588 -1.7 -2.6 Putative exonuclease, RdgC compare
Psyr_0579 -1.7 -7.4 RNAse R compare
Psyr_3309 -1.7 -5.9 membrane protein, putative compare
Psyr_0168 -1.7 -7.1 Phosphoenolpyruvate carboxykinase (ATP) compare
Psyr_3677 -1.7 -3.1 Aminotransferase, class I and II compare
Psyr_3287 -1.7 -1.1 DNA topoisomerase I compare
Psyr_4417 -1.7 -1.8 Ferredoxin--nitrite reductase compare
Psyr_4134 -1.7 -7.2 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_3120 -1.7 -2.6 D-glucarate dehydratase compare
Psyr_3457 -1.7 -4.5 Flagellar FliF M-ring protein compare
Psyr_2071 -1.7 -1.7 outer membrane lipoprotein OprI compare
Psyr_0200 -1.7 -5.2 conserved hypothetical protein compare
Psyr_3020 -1.7 -1.9 precorrin-4 C11-methyltransferase compare
Psyr_4678 -1.6 -9.3 GGDEF domain protein compare
Psyr_1140 -1.6 -3.2 Disulfide bond formation protein DsbB compare
Psyr_3474 -1.6 -4.6 Flagellar L-ring protein compare
Psyr_3489 -1.6 -3.0 FlgN compare
Psyr_3464 -1.6 -6.2 Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal:Flagellin hook IN compare
Psyr_3433 -1.6 -2.2 Protein-glutamate methylesterase compare
Psyr_1670 -1.6 -2.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_1251 -1.6 -2.7 quinoprotein compare
Psyr_4887 -1.6 -6.4 Peptidase S41A, C-terminal protease compare
Psyr_3636 -1.6 -7.2 Polysaccharide biosynthesis protein CapD compare
Psyr_3680 -1.6 -2.9 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_4203 -1.6 -1.1 SsrA-binding protein compare
Psyr_3674 -1.6 -3.1 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_4132 -1.6 -6.8 histidinol phosphate aminotransferase apoenzyme compare
Psyr_0916 -1.6 -6.9 GDP-mannose 4,6-dehydratase compare
Psyr_4920 -1.6 -1.6 conserved hypothetical bacteriophage protein compare
Psyr_1688 -1.6 -2.1 Protein of unknown function DUF1315 compare
Psyr_0826 -1.6 -4.8 glucose-6-phosphate isomerase compare
Psyr_3471 -1.5 -6.5 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_1910 -1.5 -4.3 VacJ-like lipoprotein compare
Psyr_3478 -1.5 -6.8 Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE compare
Psyr_1009 -1.5 -2.6 Peptidylprolyl isomerase, FKBP-type compare
Psyr_4844 -1.5 -7.6 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_0214 -1.5 -2.5 conserved hypothetical protein compare
Psyr_4822 -1.5 -2.7 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_0914 -1.5 -6.3 Glycosyl transferase, group 1 compare
Psyr_4880 -1.5 -2.3 conserved hypothetical protein compare
Psyr_3466 -1.5 -1.6 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_3856 -1.5 -7.3 Helicase c2 compare
Psyr_2227 -1.5 -1.8 conserved hypothetical protein compare
Psyr_3431 -1.4 -3.0 OmpA/MotB compare
Psyr_5072 -1.4 -1.0 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4138 -1.4 -3.3 Toluene tolerance compare
Psyr_4845 -1.4 -2.0 conserved hypothetical protein compare
Psyr_4133 -1.4 -7.6 histidinol dehydrogenase compare
Psyr_3005 -1.4 -1.6 3-oxoadipate enol-lactonase compare
Psyr_4113 -1.4 -5.3 LppC putative lipoprotein compare
Psyr_1044 -1.4 -6.4 transcriptional regulator, LysR family compare
Psyr_0976 -1.4 -3.3 Malate:quinone-oxidoreductase compare
Psyr_1372 -1.4 -3.5 Protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psyr_5130 -1.3 -5.5 chromosome segregation ATPase compare
Psyr_4420 -1.3 -3.1 precorrin-6A reductase compare
Psyr_2557 -1.3 -1.6 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_3459 -1.3 -2.2 Helix-turn-helix, Fis-type compare
Psyr_4627 -1.3 -1.8 dimethyladenosine transferase compare
Psyr_0364 -1.3 -4.1 sodium/proton antiporter, NhaA family compare
Psyr_1914 -1.3 -4.7 transaldolase compare
Psyr_0882 -1.3 -4.7 conserved hypothetical protein compare
Psyr_4262 -1.3 -1.3 lipoprotein, putative compare
Psyr_3015 -1.3 -4.7 cobaltochelatase CobN subunit compare
Psyr_0293 -1.3 -6.7 Polyphosphate kinase compare
Psyr_3310 -1.3 -2.9 transferase hexapeptide repeat protein compare
Psyr_4843 -1.3 -3.8 NUDIX hydrolase compare
Psyr_3308 -1.3 -5.4 Glycosyl transferase, group 1 compare
Psyr_0936 -1.3 -5.5 Glycosyl transferase, group 1 compare
Psyr_1108 -1.3 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_0923 -1.2 -4.0 hypothetical protein compare
Psyr_4658 -1.2 -2.1 CDS compare
Psyr_0486 -1.2 -5.8 TonB, C-terminal compare
Psyr_1720 -1.2 -2.2 Protein of unknown function DUF58 compare
Psyr_0561 -1.2 -5.7 chemotaxis motA protein compare
Psyr_3434 -1.2 -3.7 CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt compare
Psyr_4125 -1.2 -2.4 Protein of unknown function DUF1043 compare
Psyr_3644 -1.2 -3.1 prephenate dehydrogenase compare
Psyr_3609 -1.2 -5.1 conserved hypothetical protein compare
Psyr_2138 -1.2 -5.8 Glycosyl transferase, family 2 compare
Psyr_4140 -1.2 -1.4 Protein of unknown function DUF140 compare
Psyr_3262 -1.2 -1.5 dnaK suppressor protein, putative compare
Psyr_1719 -1.2 -2.2 conserved hypothetical protein compare


Specific Phenotypes

For 40 genes in this experiment