Experiment set8IT044 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

Formate/Acetate-Sulfite (10/60-20 mM)

200 most detrimental genes:

  gene name fitness t score description  
DVU0703 lepA +1.1 2.0 GTP-binding protein LepA (TIGR) compare
DVU2289 b2488 +1.0 0.8 hydrogenase, CooX subunit, putative (TIGR) compare
DORF11799 +1.0 4.5 no description compare
DVU2045 +0.9 4.8 hypothetical protein (TIGR) compare
DVU1154 +0.9 1.1 hypothetical protein (TIGR) compare
DORF8192 +0.9 4.3 SEED: FIG00606834: hypothetical protein compare
DVU0973 +0.9 0.6 4-hydroxybenzoate octaprenyltransferase, putative (TIGR) compare
DVU1429 +0.9 1.5 GTP-binding protein (TIGR) compare
DVU2850 +0.8 1.8 tail protein, putative (TIGR) compare
DVU_tRNA-Thr-1 tRNA-Thr +0.8 0.7 tRNA with anticodon GGT for Thr (VIMSS-AUTO) compare
DVU3175 +0.8 1.2 membrane protein, putative (TIGR) compare
DVU1726 +0.7 1.3 hypothetical protein (TIGR) compare
DVU1682 +0.7 2.5 GAF domain protein (TIGR) compare
DVU3022 +0.7 0.5 sensory box histidine kinase/response regulator (TIGR) compare
DVU1434 +0.7 0.8 hypothetical protein (TIGR) compare
DVU2223 +0.7 1.4 hypothetical protein (TIGR) compare
DVU1862 +0.6 3.9 GGDEF domain protein (TIGR) compare
DVU0311 +0.6 4.0 flagellar assembly protein FliH, putative (TIGR) compare
DVU0316 flgB +0.6 3.0 flagellar basal-body rod protein FlgB (TIGR) compare
DVU1863 +0.6 4.1 flagellar synthesis regulator FleN, putative (TIGR) compare
DVU0313 fliF +0.6 4.9 flagellar M-ring protein FliF (TIGR) compare
DVU2577 +0.6 3.2 DNA-binding response regulator, LuxR family (TIGR) compare
DVU0987 +0.6 1.7 heavy metal-binding domain protein (TIGR) compare
DVU0044 fliP +0.6 3.0 flagellar biosynthetic protein fliP (TIGR) compare
DVU2377 +0.6 1.7 hypothetical protein (TIGR) compare
DVU2198 +0.6 0.5 hypothetical protein (TIGR) compare
DVU1794 +0.6 1.1 hypothetical protein (TIGR) compare
DVU0912 +0.6 1.6 conserved domain protein (TIGR) compare
DVU1658 +0.6 1.6 transaldolase, putative (TIGR) compare
DVU0555 +0.6 0.9 hypothetical protein (TIGR) compare
DVU1520 +0.6 0.5 hypothetical protein (TIGR) compare
DVU2894 flrA +0.6 4.3 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU0315 flgC +0.6 3.6 flagellar basal-body rod protein FlgC (TIGR) compare
DVU0580 moaA +0.5 3.1 molybdenum cofactor biosynthesis protein A (TIGR) compare
DVU3318 +0.5 3.1 hypothetical protein (TIGR) compare
DVU0507 +0.5 0.9 conserved hypothetical protein (TIGR) compare
DVU0333 +0.5 2.2 hypothetical protein (TIGR) compare
DVU0310 fliI +0.5 3.8 flagellum-specific ATP synthase FliI (TIGR) compare
DVU2191 +0.5 2.7 hypothetical protein (TIGR) compare
DVU1470 ppiC +0.5 1.6 peptidyl-prolyl cis-trans isomerase C (TIGR) compare
DVU0909 +0.5 1.9 hypothetical protein (TIGR) compare
DVU0913 +0.5 2.0 conserved hypothetical protein (TIGR) compare
DVU0522 yviF +0.5 3.2 conserved hypothetical protein (TIGR) compare
DVU0378 +0.5 1.1 thioredoxin, putative (TIGR) compare
DVU3234 +0.5 3.5 flagellar biosynthetic protein FliR (TIGR) compare
DVU1728 +0.5 0.9 conserved hypothetical protein (TIGR) compare
DVU3225 +0.5 3.7 hypothetical protein (TIGR) compare
DVU0970 +0.5 2.8 lipoprotein, putative (TIGR) compare
DVU2184 +0.5 2.2 DNA-binding domain, excisionase family (TIGR) compare
DVU2454 +0.5 0.3 hypothetical protein (TIGR) compare
DVU1704 +0.5 0.6 conserved hypothetical protein (TIGR) compare
DVU2631 +0.5 0.7 hypothetical protein (TIGR) compare
DVU0307 +0.5 3.2 flagella basal body rod domain protein (TIGR) compare
DVU0314 fliE +0.5 2.2 flagellar basal body component FliE (TIGR) compare
DVU2391 +0.5 0.4 hypothetical protein (TIGR) compare
DVU0206 +0.5 1.7 hypothetical protein (TIGR) compare
DVUA0092 +0.5 3.1 hypothetical protein (TIGR) compare
DVU0629 +0.5 1.7 transcriptional regulator, TetR family (TIGR) compare
DVU1082 +0.5 1.8 3- 5 exonuclease domain protein (TIGR) compare
DVU0513 flgG +0.5 3.5 flagellar basal-body rod protein FlgG (TIGR) compare
DVU2915 +0.5 3.6 hypothetical protein (TIGR) compare
DVU2802 +0.5 3.4 transcriptional regulator, GntR family (TIGR) compare
DVU3387 +0.4 3.5 hypothetical protein (TIGR) compare
DVU2200 +0.4 0.4 hypothetical protein (TIGR) compare
DVU3208 +0.4 1.2 membrane protein, putative (TIGR) compare
DVU1445 +0.4 2.2 flagellar hook-length control domain protein (TIGR) compare
DVU1409 +0.4 2.0 hypothetical protein (TIGR) compare
DVU3232 flhA +0.4 3.5 flagellar biosynthetic protein FlhA (TIGR) compare
DVU0046 fliN +0.4 2.6 flagellar motor switch protein FliN (TIGR) compare
DVU2591 +0.4 1.5 tail fiber assembly protein, putative (TIGR) compare
DVU0501 +0.4 2.6 conserved hypothetical protein (TIGR) compare
DVU2567 lysX +0.4 1.3 predicted transcriptional regulator for lysine biosynthesis and transport (Dmitry Rodionov) compare
DVU3233 flhB +0.4 3.1 flagellar biosynthetic protein FlhB (TIGR) compare
DVU2016 +0.4 1.1 GGDEF domain protein (TIGR) compare
DVU0312 fliG +0.4 3.0 flagellar motor switch protein FliG (TIGR) compare
DVU2220 +0.4 1.0 conserved hypothetical protein (TIGR) compare
DVU0475 +0.4 2.0 membrane protein, putative, truncation (TIGR) compare
DVU0716 livF +0.4 2.2 branched-chain amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVUA0146 +0.4 2.5 hypothetical protein (TIGR) compare
DVU1275 +0.4 2.4 hypothetical protein (TIGR) compare
DVU2787 +0.4 1.5 conserved domain protein (TIGR) compare
DVU2172 +0.4 1.5 hypothetical protein (TIGR) compare
DVU0043 fliQ +0.4 2.2 flagellar biosynthetic protein FliQ (TIGR) compare
DVU1948 +0.4 1.3 conserved hypothetical protein (TIGR) compare
DVU0045 +0.4 1.7 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU1389 +0.4 1.4 hypothetical protein (TIGR) compare
DVU2042 +0.4 1.6 Fic family protein (TIGR) compare
DVU2770 +0.4 2.3 response regulator (TIGR) compare
DVU1115 +0.4 1.5 conserved hypothetical protein (TIGR) compare
DVU0514 +0.4 2.5 FlgA family protein (TIGR) compare
DVU2293 cooF +0.4 0.5 iron-sulfur protein CooF (TIGR) compare
DVU1348 xseB +0.4 1.8 exodeoxyribonuclease VII, small subunit (TIGR) compare
DVU3117 +0.4 1.3 hypothetical protein (TIGR) compare
DVU1676 secG +0.4 1.6 preprotein translocase, SecG subunit (TIGR) compare
DVU0910 fliM +0.4 2.0 flagellar motor switch protein FliM (TIGR) compare
DVU2609 +0.4 2.1 chemotaxis MotB protein, putative (TIGR) compare
DVU0793 +0.4 0.9 hypothetical protein (TIGR) compare
DVU2117 +0.4 1.8 membrane protein, putative (TIGR) compare
DVU0047 +0.4 1.9 flagellar protein FliL (TIGR) compare
DVU0108 +0.4 1.5 hypothetical protein (TIGR) compare
DORF12461 +0.4 1.2 SEED: HigA protein (antitoxin to HigB) compare
DVU2670 +0.4 1.0 hypothetical protein (TIGR) compare
DVU1506 +0.4 1.0 hypothetical protein (TIGR) compare
DVU1621 +0.4 1.4 hypothetical protein (TIGR) compare
DVU0257 +0.4 0.6 acetyltransferase, GNAT family (TIGR) compare
DVU1521 +0.4 0.2 hypothetical protein (TIGR) compare
DVU2761 +0.4 0.3 hypothetical protein (TIGR) compare
DVU2669 +0.4 0.9 conserved domain protein (TIGR) compare
DVU0516 flgI +0.4 2.3 flagellar P-ring protein FlgI (TIGR) compare
DVU2896 +0.4 3.0 TPR domain protein (TIGR) compare
DORF10920 +0.4 1.7 no description compare
DVU2865 +0.4 0.4 lipoprotein, putative (TIGR) compare
DVU1690 +0.4 1.4 transcriptional regulator, TetR family (TIGR) compare
DVU2867 +0.4 0.5 holin (TIGR) compare
DVU0858 +0.4 2.5 lipoprotein, putative (TIGR) compare
DVU1174 +0.4 1.0 hypothetical protein (TIGR) compare
DVU0534 hmcC +0.4 2.2 HmcC, 43.2 kd protein in hmc operon (voordouw) compare
DVU1796 +0.4 0.6 hypothetical protein (TIGR) compare
DVU1276 +0.4 3.0 hypothetical protein (TIGR) compare
DVU2434 +0.4 1.9 hypothetical protein (TIGR) compare
DVU2038 +0.4 2.3 hypothetical protein (TIGR) compare
DVU0880 +0.3 1.5 hypothetical protein (TIGR) compare
DORF10446 +0.3 2.6 SEED: FIG00604570: hypothetical protein compare
DVU1444 flgD +0.3 2.6 basal-body rod modification protein FlgD (TIGR) compare
DVU1221 +0.3 0.6 hypothetical protein (TIGR) compare
DVU1577 hslV +0.3 0.8 ATP-dependent protease hslV (TIGR) compare
DVU2615 +0.3 1.5 bacterial extracellular solute-binding protein, family 3 (TIGR) compare
DVU2846 +0.3 0.9 hypothetical protein (TIGR) compare
DORF10632 +0.3 2.0 SEED: FIG00602944: hypothetical protein compare
DVU1630 ptsN +0.3 0.4 PTS system, IIA component (TIGR) compare
DVU2100 +0.3 1.3 universal stress protein family (TIGR) compare
DVU2055 metG +0.3 0.4 methionyl-tRNA synthetase (TIGR) compare
DVU2804 +0.3 2.6 metallo-beta-lactamase family protein (TIGR) compare
DVU3066 +0.3 1.6 DNA-binding protein (TIGR) compare
DVU1729 +0.3 1.0 killer protein, putative (TIGR) compare
DVU0036 +0.3 1.5 hypothetical protein (TIGR) compare
DVU1767 +0.3 1.8 radical SAM domain protein (TIGR) compare
DVU1933 +0.3 0.2 peptidase, PfpI family (TIGR) compare
DVU2411 +0.3 2.6 EF hand domain protein (TIGR) compare
DVU0518 +0.3 2.5 hypothetical protein (TIGR) compare
DORF14945 +0.3 1.3 no description compare
DVU0128 +0.3 1.9 membrane protein, putative (TIGR) compare
DVU2427 +0.3 2.0 hypothetical protein (TIGR) compare
DVU2523 +0.3 0.7 lipoprotein, putative (TIGR) compare
DVU1974 +0.3 1.5 pyridine nucleotide-disulfide oxidoreductase (TIGR) compare
DVU1982 rhlE +0.3 1.8 ATP-dependent RNA helicase RhlE (TIGR) compare
DVUA0120 +0.3 2.2 type III secretion protein, putative (TIGR) compare
DVU1696 +0.3 1.4 hypothetical protein (TIGR) compare
DVU0689 rnhA +0.3 0.4 ribonuclease HI (TIGR) compare
DVU0136 +0.3 1.5 hypothetical protein (TIGR) compare
DVU1063 flrC +0.3 1.8 transcriptional regulatory protein (TIGR) compare
DVU0592 cheW-1 +0.3 1.1 chemotaxis protein CheW (TIGR) compare
DVU0034 +0.3 1.7 DSBA-like thioredoxin domain protein (TIGR) compare
DVU1339 +0.3 2.0 lipoprotein, putative (TIGR) compare
DVU0647 +0.3 1.6 iron compound ABC transporter, periplasmic iron compount-binding protein, putative (TIGR) compare
DVU0946 +0.3 1.3 sigma-54 dependent transcriptional regulator/response regulator (TIGR) compare
DVU3217 +0.3 1.7 hypothetical protein (TIGR) compare
DVU1193 radC +0.3 1.2 DNA repair protein RadC (TIGR) compare
DVU1785 +0.3 1.1 membrane protein, MarC family (TIGR) compare
DVU1629 yfiA +0.3 1.9 ribosomal subunit interface protein (TIGR) compare
DVU2803 +0.3 2.3 membrane protein, putative (TIGR) compare
DVU2333 ndk +0.3 1.4 nucleoside diphosphate kinase (TIGR) compare
DVU1567 +0.3 1.4 hypothetical protein (TIGR) compare
DVU0754 +0.3 0.7 hypothetical protein (TIGR) compare
DVU0764 hup-2 +0.3 0.9 DNA-binding protein HU (TIGR) compare
DVU1477 +0.3 1.0 hypothetical protein (TIGR) compare
DVU0974 +0.3 1.5 hypothetical protein (TIGR) compare
DVU0515 flgH +0.3 1.9 flagellar L-ring protein FlgH (TIGR) compare
DVU1842 +0.3 0.5 lipoprotein, putative (TIGR) compare
DVU2364 +0.3 1.7 aminotransferase, classes I and II (TIGR) compare
DVU2607 +0.3 1.9 hypothetical protein (TIGR) compare
DVU2390 +0.3 1.9 TonB domain protein (TIGR) compare
DVU0097 potB +0.3 1.1 polyamine ABC transporter, permease protein (TIGR) compare
DVU2703 +0.3 0.3 hypothetical protein (TIGR) compare
DVU1001 b0965 +0.3 1.9 coenzyme A binding protein (TIGR) compare
DVU2684 +0.3 0.9 hypothetical protein (TIGR) compare
DVU2878 +0.3 1.0 adenine specific DNA methyltransferase, putative (TIGR) compare
DVU0822 +0.3 1.1 hypothetical protein (TIGR) compare
DORF12360 +0.3 1.3 SEED: FIG00605053: hypothetical protein compare
DVU1838 trxB-2 +0.3 0.7 thioredoxin reductase (TIGR) compare
DVU1557 +0.3 0.8 hypothetical protein (TIGR) compare
DVU2600 +0.3 1.1 hypothetical protein (TIGR) compare
DVU1265 +0.3 1.3 hypothetical protein (TIGR) compare
DVU1271 +0.3 1.7 general secretion pathway protein F, putative (TIGR) compare
DVU3364 +0.3 1.3 conserved hypothetical protein (TIGR) compare
DVU1045 +0.3 1.6 hypothetical protein (TIGR) compare
DVU3229 fliA +0.3 1.2 RNA polymerase sigma factor for flagellar operon FliA (TIGR) compare
DVU0603 +0.3 0.7 hypothetical protein (TIGR) compare
DVU1945 oorA +0.3 1.7 pyruvate ferredoxin oxidoreductase, alpha subunit, putative (TIGR) compare
DVU1951 +0.3 1.9 indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative (TIGR) compare
DVU2973 hup +0.3 1.2 integration host factor, beta subunit (TIGR) compare
DVU2805 +0.3 2.2 cobalamin synthesis protein/P47K family (TIGR) compare
DVU3360 parB +0.3 1.9 ParB family protein (TIGR) compare
DVU3226 +0.3 1.2 hypothetical protein (TIGR) compare
DVU0519 +0.3 2.2 flagellar hook-associated protein FlgK, putative (TIGR) compare
DVU1446 +0.3 1.7 heptosyltransferase family protein (TIGR) compare
DVU1530 +0.3 1.5 metallo-beta-lactamase family protein (TIGR) compare
DVU2621 +0.3 1.7 hypothetical protein (TIGR) compare
DVU1076 +0.3 0.7 conserved hypothetical protein TIGR00278 (TIGR) compare
DVU2116 +0.3 0.9 pilin, putative (TIGR) compare


Specific Phenotypes

None in this experiment

For Desulfovibrio vulgaris Hildenborough JW710 in respiratory growth experiments

For respiratory growth Sodium Formate across organisms