Experiment set8IT043 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -10.3 -7.1 histidinol-phosphate transaminase compare
BWI76_RS20355 -9.4 -6.5 colicin V production protein compare
BWI76_RS04250 -9.3 -6.5 homoserine kinase compare
BWI76_RS11965 -9.1 -6.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS04465 -8.0 -5.5 carbamoyl-phosphate synthase small subunit compare
BWI76_RS00805 -7.8 -7.1 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS05840 -7.8 -5.4 glutamate 5-kinase compare
BWI76_RS24285 -7.8 -9.3 cystathionine beta-lyase compare
BWI76_RS18920 -7.7 -5.3 ATP phosphoribosyltransferase compare
BWI76_RS00850 -7.7 -10.0 acetylglutamate kinase compare
BWI76_RS05835 -7.6 -5.2 gamma-glutamyl-phosphate reductase compare
BWI76_RS21475 -7.5 -7.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18935 -7.5 -7.3 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS21265 -7.4 -15.0 phosphoribosylformylglycinamidine synthase compare
BWI76_RS23920 -7.4 -7.2 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS01655 -7.3 -10.5 homoserine O-succinyltransferase compare
BWI76_RS27385 -7.3 -7.1 orotate phosphoribosyltransferase compare
BWI76_RS20350 -7.2 -7.2 amidophosphoribosyltransferase compare
BWI76_RS04685 -7.2 -12.0 putative leucine operon leader peptide compare
BWI76_RS18950 -7.1 -5.7 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS08385 -7.1 -4.2 citrate (Si)-synthase compare
BWI76_RS04470 -7.1 -10.8 carbamoyl phosphate synthase large subunit compare
BWI76_RS23360 -7.0 -4.8 diaminopimelate decarboxylase compare
BWI76_RS00855 -6.9 -10.5 argininosuccinate lyase compare
BWI76_RS01615 -6.9 -10.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS03010 -6.8 -10.6 ornithine carbamoyltransferase compare
BWI76_RS00990 -6.8 -8.4 ketol-acid reductoisomerase compare
BWI76_RS07070 -6.7 -6.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04670 -6.7 -11.7 3-isopropylmalate dehydratase large subunit compare
BWI76_RS07065 -6.7 -6.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS09645 -6.7 -2.9 thioredoxin-disulfide reductase compare
BWI76_RS18940 -6.6 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS20895 -6.6 -7.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS26085 -6.6 -4.5 3-dehydroquinate synthase compare
BWI76_RS10990 -6.6 -4.0 dihydroorotase compare
BWI76_RS04675 -6.6 -6.7 3-isopropylmalate dehydrogenase compare
BWI76_RS04665 -6.5 -17.5 3-isopropylmalate dehydratase small subunit compare
BWI76_RS04255 -6.4 -12.4 threonine synthase compare
BWI76_RS09755 -6.4 -9.7 phosphoserine transaminase compare
BWI76_RS18925 -6.3 -7.7 histidinol dehydrogenase compare
BWI76_RS11850 -6.3 -10.5 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS25645 -6.3 -8.6 shikimate dehydrogenase compare
BWI76_RS27390 -6.3 -7.0 ribonuclease PH compare
BWI76_RS00980 -6.0 -12.2 PLP-dependent threonine dehydratase compare
BWI76_RS00835 -6.0 -14.0 phosphoenolpyruvate carboxylase compare
BWI76_RS01610 -6.0 -7.0 phosphoribosylamine--glycine ligase compare
BWI76_RS02995 -5.9 -10.6 aspartate carbamoyltransferase compare
BWI76_RS00785 -5.9 -7.0 cystathionine gamma-synthase compare
BWI76_RS20965 -5.9 -6.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS23220 -5.9 -9.5 amino-acid N-acetyltransferase compare
BWI76_RS18955 -5.8 -6.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04160 -5.8 -7.4 phosphoserine phosphatase compare
BWI76_RS00845 -5.7 -12.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00965 -5.7 -2.4 acetolactate synthase 2 small subunit compare
BWI76_RS13920 -5.6 -8.0 magnesium-translocating P-type ATPase compare
BWI76_RS09910 -5.6 -15.8 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS04645 -5.6 -5.9 3-dehydroquinase compare
BWI76_RS22760 -5.4 -9.3 sulfite reductase subunit beta compare
BWI76_RS11855 -5.4 -7.9 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS04245 -5.3 -14.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS22690 -5.3 -4.0 adenylyl-sulfate kinase compare
BWI76_RS23365 -5.3 -8.8 LysR family transcriptional regulator compare
BWI76_RS22765 -5.2 -11.6 sulfite reductase subunit alpha compare
BWI76_RS00975 -5.2 -7.8 dihydroxy-acid dehydratase compare
BWI76_RS24900 -5.1 -3.5 DeoR family transcriptional regulator compare
BWI76_RS00985 -5.0 -8.0 transcriptional regulator IlvY compare
BWI76_RS22755 -5.0 -8.8 phosphoadenosine phosphosulfate reductase compare
BWI76_RS25115 -4.9 -8.0 argininosuccinate synthase compare
BWI76_RS00400 -4.8 -3.3 glutamine synthetase compare
BWI76_RS04680 -4.7 -9.2 2-isopropylmalate synthase compare
BWI76_RS26570 -4.7 -5.6 anion permease compare
BWI76_RS11840 -4.6 -6.3 tryptophan synthase subunit alpha compare
BWI76_RS11860 -4.5 -6.6 anthranilate synthase component I compare
BWI76_RS00180 -4.5 -2.7 F0F1 ATP synthase subunit epsilon compare
BWI76_RS11845 -4.3 -3.6 tryptophan synthase subunit beta compare
BWI76_RS23240 -4.2 -2.9 exonuclease V subunit gamma compare
BWI76_RS26000 -4.2 -10.4 aspartate aminotransferase family protein compare
BWI76_RS04240 -4.1 -3.9 thr operon leader peptide compare
BWI76_RS20435 -4.1 -2.5 chorismate synthase compare
BWI76_RS01800 -3.9 -3.5 glucose-6-phosphate isomerase compare
BWI76_RS20650 -3.8 -2.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS15115 -3.8 -6.3 MFS transporter compare
BWI76_RS09760 -3.8 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS21465 -3.7 -3.2 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS23230 -3.6 -2.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS04305 -3.4 -2.0 molecular chaperone DnaJ compare
BWI76_RS06525 -3.4 -5.0 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS09660 -3.3 -2.3 DNA translocase FtsK compare
BWI76_RS02735 -3.3 -6.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS05200 -3.2 -3.7 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS26055 -2.9 -7.6 siroheme synthase compare
BWI76_RS02530 -2.9 -2.6 tRNA dimethylallyltransferase compare
BWI76_RS05015 -2.9 -2.6 transcriptional regulator compare
BWI76_RS00960 -2.6 -4.2 acetolactate synthase 2 catalytic subunit compare
BWI76_RS15225 -2.6 -2.6 DeoR family transcriptional regulator compare
BWI76_RS23480 -2.6 -12.9 EAL domain-containing protein compare
BWI76_RS25600 -2.5 -1.9 tRNA-Thr compare
BWI76_RS04510 -2.5 -2.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS05450 -2.4 -2.7 ribonuclease HI compare
BWI76_RS01350 -2.4 -2.0 NAD(P)H-flavin reductase compare
BWI76_RS01200 -2.4 -2.7 diaminopimelate epimerase compare
BWI76_RS23265 -2.2 -4.0 hypothetical protein compare
BWI76_RS20640 -2.1 -5.3 cysteine synthase A compare
BWI76_RS25335 -2.0 -2.6 stringent starvation protein A compare
BWI76_RS06765 -2.0 -3.8 transcriptional regulator compare
BWI76_RS06530 -2.0 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS08275 -1.9 -2.5 LexA regulated protein compare
BWI76_RS27430 -1.9 -1.8 (p)ppGpp synthetase compare
BWI76_RS09190 -1.8 -4.9 hypothetical protein compare
BWI76_RS01210 -1.8 -2.5 tyrosine recombinase XerC compare
BWI76_RS00355 -1.8 -3.0 DNA polymerase I compare
BWI76_RS01275 -1.8 -7.0 LysR family transcriptional regulator compare
BWI76_RS13915 -1.7 -3.5 magnesium transport protein MgtC compare
BWI76_RS00345 -1.7 -3.7 protein disulfide oxidoreductase DsbA compare
BWI76_RS15110 -1.7 -8.9 putative excinuclease ABC subunit A compare
BWI76_RS25065 -1.7 -4.7 polyribonucleotide nucleotidyltransferase compare
BWI76_RS22700 -1.7 -4.1 sulfate adenylyltransferase subunit 2 compare
BWI76_RS22695 -1.6 -4.8 sulfate adenylyltransferase compare
BWI76_RS04705 -1.6 -4.9 DNA-binding transcriptional regulator FruR compare
BWI76_RS02410 -1.5 -1.9 EF-P beta-lysylation protein EpmB compare
BWI76_RS00390 -1.5 -5.3 two-component system sensor histidine kinase NtrB compare
BWI76_RS08665 -1.5 -5.5 6-phosphogluconolactonase compare
BWI76_RS21370 -1.5 -2.2 ATP-dependent RNA helicase SrmB compare
BWI76_RS25320 -1.4 -4.8 glutamate synthase compare
BWI76_RS20440 -1.4 -1.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS01530 -1.4 -4.3 2-iminoacetate synthase ThiH compare
BWI76_RS00380 -1.4 -7.1 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS18715 -1.4 -5.4 hypothetical protein compare
BWI76_RS21580 -1.4 -2.1 SsrA-binding protein compare
BWI76_RS04100 -1.3 -4.2 peptide chain release factor 3 compare
BWI76_RS23885 -1.3 -2.1 2-octaprenylphenol hydroxylase compare
BWI76_RS09655 -1.3 -4.5 leucine-responsive regulatory protein compare
BWI76_RS15845 -1.3 -1.4 hypothetical protein compare
BWI76_RS19025 -1.3 -8.8 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS22705 -1.3 -7.8 siroheme synthase compare
BWI76_RS14935 -1.3 -1.5 NIPSNAP family containing protein compare
BWI76_RS01185 -1.2 -2.7 adenylate cyclase compare
BWI76_RS25315 -1.2 -8.8 glutamate synthase large subunit compare
BWI76_RS21480 -1.2 -2.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS11130 -1.2 -5.0 PTS glucose transporter subunit IIBC compare
BWI76_RS19375 -1.2 -1.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS13435 -1.2 -1.8 hypothetical protein compare
BWI76_RS01550 -1.2 -4.4 thiamine phosphate synthase compare
BWI76_RS01540 -1.2 -2.1 thiamine biosynthesis protein ThiS compare
BWI76_RS09255 -1.2 -2.2 hypothetical protein compare
BWI76_RS01535 -1.2 -5.6 thiazole synthase compare
BWI76_RS20785 -1.2 -1.4 ethanolamine utilization protein EutJ compare
BWI76_RS21140 -1.2 -1.7 molecular chaperone HscA compare
BWI76_RS26075 -1.2 -2.0 DNA adenine methylase compare
BWI76_RS13595 -1.1 -2.9 transcriptional regulator compare
BWI76_RS01325 -1.1 -1.6 twin-arginine translocase subunit TatB compare
BWI76_RS13545 -1.1 -1.5 N-acetyltransferase compare
BWI76_RS09650 -1.1 -4.0 hypothetical protein compare
BWI76_RS00385 -1.1 -7.3 nitrogen assimilation regulatory protein compare
BWI76_RS15840 -1.1 -1.7 prophage protein compare
BWI76_RS06770 -1.1 -6.4 Hha toxicity attenuator compare
BWI76_RS15825 -1.1 -1.1 hypothetical protein compare
BWI76_RS15850 -1.1 -0.6 DUF1317 domain-containing protein compare
BWI76_RS21165 -1.1 -1.8 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS00970 -1.1 -1.8 branched chain amino acid aminotransferase compare
BWI76_RS25425 -1.1 -1.7 arginine repressor compare
BWI76_RS27940 -1.0 -2.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS24025 -1.0 -6.1 agmatinase compare
BWI76_RS14650 -1.0 -1.8 helix-turn-helix transcriptional regulator compare
BWI76_RS00240 -1.0 -2.2 FMN-binding protein MioC compare
BWI76_RS00795 -1.0 -2.7 carboxymuconolactone decarboxylase compare
BWI76_RS24075 -1.0 -3.3 glutathione synthase compare
BWI76_RS11610 -1.0 -2.3 glutamate dehydrogenase compare
BWI76_RS08580 -1.0 -3.5 quinolinate synthetase compare
BWI76_RS18710 -1.0 -6.9 GGDEF-domain containing protein compare
BWI76_RS14435 -1.0 -1.6 glutamine ABC transporter ATP-binding protein compare
BWI76_RS17190 -1.0 -2.5 TonB system transport protein TonB compare
BWI76_RS04270 -1.0 -4.3 transaldolase compare
BWI76_RS17975 -0.9 -3.0 tail-specific protease compare
BWI76_RS06730 -0.9 -1.8 lac repressor compare
BWI76_RS04955 -0.9 -1.7 hypoxanthine phosphoribosyltransferase compare
BWI76_RS17565 -0.9 -1.4 hypothetical protein compare
BWI76_RS00865 -0.9 -2.7 DNA-binding transcriptional regulator OxyR compare
BWI76_RS14625 -0.9 -1.2 protein TolA compare
BWI76_RS26665 -0.9 -2.4 DNA-binding response regulator compare
BWI76_RS13445 -0.9 -1.3 alpha/beta hydrolase compare
BWI76_RS01555 -0.9 -6.3 phosphomethylpyrimidine synthase ThiC compare
BWI76_RS01195 -0.9 -1.4 membrane protein compare
BWI76_RS06185 -0.9 -4.0 shikimate kinase II compare
BWI76_RS18240 -0.9 -1.7 L-arabinose ABC transporter permease AraH compare
BWI76_RS19995 -0.9 -1.6 IclR family transcriptional regulator compare
BWI76_RS01925 -0.9 -5.5 aromatic amino acid aminotransferase compare
BWI76_RS06495 -0.8 -3.9 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS05120 -0.8 -4.2 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS19870 -0.8 -1.7 malate:quinone oxidoreductase compare
BWI76_RS06490 -0.8 -3.4 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS21565 -0.8 -1.1 outer membrane protein assembly factor BamE compare
BWI76_RS20995 -0.8 -4.1 RNA degradosome polyphosphate kinase compare
BWI76_RS11040 -0.8 -2.1 ribonuclease E compare
BWI76_RS21450 -0.8 -2.3 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS25000 -0.8 -1.7 malonate decarboxylase acyl carrier protein compare
BWI76_RS12515 -0.8 -2.0 protease compare
BWI76_RS19490 -0.8 -2.4 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS09870 -0.8 -3.4 aromatic amino acid aminotransferase compare
BWI76_RS05165 -0.8 -4.1 cobalamin-binding protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in exudates experiments

For exudates Brachypodium distachyon 27-day exudates across organisms