Experiment set8IT033 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS20995 +3.3 18.2 RNA degradosome polyphosphate kinase compare
BWI76_RS07465 +3.3 17.4 TetR family transcriptional regulator compare
BWI76_RS26685 +2.8 14.1 glutathione-disulfide reductase compare
BWI76_RS00140 +2.8 7.9 phosphate transport system regulator PhoU compare
BWI76_RS20640 +2.6 11.2 cysteine synthase A compare
BWI76_RS26465 +2.6 20.4 4-amino-4-deoxy-L-arabinose lipid A transferase compare
BWI76_RS26480 +2.4 12.0 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS26475 +2.3 16.0 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS26485 +2.3 12.6 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
BWI76_RS26470 +2.2 13.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS01890 +2.2 7.7 transcriptional regulator Zur compare
BWI76_RS27675 +2.1 14.8 EmrB/QacA family drug resistance transporter compare
BWI76_RS27425 +2.0 3.0 DNA-directed RNA polymerase subunit omega compare
BWI76_RS11275 +1.9 12.4 sensor protein PhoQ compare
BWI76_RS24480 +1.8 11.2 undecaprenyl-diphosphatase compare
BWI76_RS09030 +1.7 7.1 transpeptidase compare
BWI76_RS09825 +1.7 10.6 envelope biogenesis factor ElyC compare
BWI76_RS00865 +1.6 8.8 DNA-binding transcriptional regulator OxyR compare
BWI76_RS17915 +1.5 10.4 membrane protein compare
BWI76_RS06535 +1.5 6.4 endopeptidase La compare
BWI76_RS12170 +1.4 1.5 hypothetical protein compare
BWI76_RS15825 +1.4 3.7 hypothetical protein compare
BWI76_RS00025 +1.4 2.1 hypothetical protein compare
BWI76_RS05075 +1.4 2.3 type II secretion system protein GspG compare
BWI76_RS05005 +1.4 5.5 polynucleotide adenylyltransferase compare
BWI76_RS01070 +1.3 8.8 thiol reductase thioredoxin compare
BWI76_RS05235 +1.3 2.8 hypothetical protein compare
BWI76_RS00725 +1.3 5.4 periplasmic repressor CpxP compare
BWI76_RS22815 +1.2 9.3 hybrid sensor histidine kinase/response regulator compare
BWI76_RS22685 +1.2 6.1 hypothetical protein compare
BWI76_RS06870 +1.2 3.6 aminoacyl-tRNA deacylase compare
BWI76_RS24585 +1.2 5.1 glycerol dehydrogenase compare
BWI76_RS26580 +1.2 4.7 universal stress protein A compare
BWI76_RS05440 +1.2 8.1 hydroxyacylglutathione hydrolase compare
BWI76_RS17910 +1.2 6.3 hypothetical protein compare
BWI76_RS26125 +1.2 6.6 carboxypeptidase/penicillin-binding protein 1A compare
BWI76_RS14075 +1.2 3.6 TetR family transcriptional regulator compare
BWI76_RS07995 +1.2 2.2 twin-arginine translocase subunit TatA compare
BWI76_RS26095 +1.1 2.1 shikimate kinase compare
BWI76_RS26185 +1.1 4.5 thiosulfate sulfurtransferase compare
BWI76_RS17765 +1.1 2.4 hypothetical protein compare
BWI76_RS00715 +1.1 4.5 two-component sensor histidine kinase compare
BWI76_RS03080 +1.1 3.3 (Fe-S)-cluster assembly protein compare
BWI76_RS09520 +1.1 4.0 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS24915 +1.1 8.5 penicillin-binding protein activator compare
BWI76_RS07985 +1.1 1.8 fluoride ion transporter CrcB compare
BWI76_RS26455 +1.0 5.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS24075 +1.0 3.4 glutathione synthase compare
BWI76_RS17970 +1.0 3.6 zinc metalloprotease HtpX compare
BWI76_RS23655 +1.0 7.1 DeoR family transcriptional regulator compare
BWI76_RS18335 +1.0 7.8 DNA-binding response regulator compare
BWI76_RS05180 +1.0 7.3 serine endoprotease DegQ compare
BWI76_RS18605 +1.0 2.1 oxidoreductase molybdopterin-binding protein compare
BWI76_RS22090 +1.0 2.4 transcriptional regulator compare
BWI76_RS06785 +1.0 7.0 DNA-binding transcriptional repressor AcrR compare
BWI76_RS17080 +1.0 6.1 hypothetical protein compare
BWI76_RS23705 +1.0 3.4 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS10350 +1.0 7.2 EamA family transporter compare
BWI76_RS17370 +0.9 1.3 nitrate transporter NasD compare
BWI76_RS13215 +0.9 2.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS11980 +0.9 2.5 DeoR family transcriptional regulator compare
BWI76_RS24605 +0.9 6.7 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS17570 +0.9 1.0 iron-sulfur-binding protein compare
BWI76_RS10345 +0.9 8.0 MFS transporter compare
BWI76_RS20375 +0.9 2.6 membrane protein compare
BWI76_RS04970 +0.9 1.4 ABC transporter permease compare
BWI76_RS15190 +0.9 4.3 GGDEF domain-containing protein compare
BWI76_RS06520 +0.9 4.1 trigger factor compare
BWI76_RS17330 +0.8 2.5 nitrate reductase subunit beta compare
BWI76_RS03595 +0.8 1.9 ethanolamine utilization protein EutM compare
BWI76_RS04270 +0.8 4.0 transaldolase compare
BWI76_RS19100 +0.8 3.3 putative acid phosphatase compare
BWI76_RS06665 +0.8 1.5 membrane protein compare
BWI76_RS24765 +0.8 5.0 membrane protein compare
BWI76_RS09455 +0.8 2.7 YbjN domain-containing protein compare
BWI76_RS25475 +0.8 5.7 TIGR02099 family protein compare
BWI76_RS16015 +0.8 1.8 pheromone autoinducer 2 transporter compare
BWI76_RS16935 +0.8 1.5 shikimate dehydrogenase compare
BWI76_RS27620 +0.8 2.8 hypothetical protein compare
BWI76_RS27915 +0.8 1.6 YceK/YidQ family lipoprotein compare
BWI76_RS09100 +0.8 6.0 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS25365 +0.8 3.3 serine endoprotease DegQ compare
BWI76_RS06340 +0.7 1.3 hypothetical protein compare
BWI76_RS20960 +0.7 4.1 ROK family protein compare
BWI76_RS26460 +0.7 3.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS09490 +0.7 2.2 DNA-binding response regulator compare
BWI76_RS20805 +0.7 3.9 phosphate acetyltransferase compare
BWI76_RS19890 +0.7 1.8 alpha-ketoglutarate-dependent dioxygenase AlkB compare
BWI76_RS15070 +0.7 6.6 non-ribosomal peptide synthetase compare
BWI76_RS01585 +0.7 2.9 transcriptional regulator compare
BWI76_RS06745 +0.7 2.0 N-acetyltransferase GCN5 compare
BWI76_RS26215 +0.7 4.8 glycogen-branching enzyme compare
BWI76_RS00765 +0.7 5.0 DNA-binding transcriptional regulator CytR compare
BWI76_RS16970 +0.7 4.5 murein L,D-transpeptidase compare
BWI76_RS15605 +0.7 2.2 hypothetical protein compare
BWI76_RS07820 +0.7 1.4 S-methyl-5-thioribose kinase compare
BWI76_RS02735 +0.7 1.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS11155 +0.7 2.4 penicillin-binding protein activator LpoB compare
BWI76_RS04850 +0.7 3.0 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS05520 +0.7 2.3 hypothetical protein compare
BWI76_RS15080 +0.7 5.6 hypothetical protein compare
BWI76_RS10305 +0.7 3.6 transposase compare
BWI76_RS22120 +0.7 5.9 glutamate--cysteine ligase compare
BWI76_RS22450 +0.6 2.3 selenoprotein W-related protein compare
BWI76_RS07645 +0.6 1.7 short-chain dehydrogenase/reductase compare
BWI76_RS09625 +0.6 1.4 hypothetical protein compare
BWI76_RS04815 +0.6 1.7 cell division protein ZapD compare
BWI76_RS09560 +0.6 1.7 DoxX family membrane protein compare
BWI76_RS15280 +0.6 2.7 sugar transporter compare
BWI76_RS05050 +0.6 2.3 general secretion pathway protein GspL compare
BWI76_RS20915 +0.6 3.1 peroxiredoxin compare
BWI76_RS19495 +0.6 1.1 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS05010 +0.6 1.9 tRNA glutamyl-Q synthetase compare
BWI76_RS24260 +0.6 1.6 hypothetical protein compare
BWI76_RS08335 +0.6 2.2 deoxyribodipyrimidine photo-lyase compare
BWI76_RS04975 +0.6 1.6 PTS fructose subfamily transporter subunit IIA compare
BWI76_RS02560 +0.6 2.5 membrane protein compare
BWI76_RS11060 +0.6 1.6 septum formation inhibitor Maf compare
BWI76_RS23515 +0.6 1.7 antibiotic biosynthesis monooxygenase compare
BWI76_RS05425 +0.6 3.6 EEP domain-containing protein compare
BWI76_RS25425 +0.6 1.6 arginine repressor compare
BWI76_RS27770 +0.6 1.3 hypothetical protein compare
BWI76_RS20065 +0.6 3.0 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
BWI76_RS25000 +0.6 1.2 malonate decarboxylase acyl carrier protein compare
BWI76_RS14145 +0.6 2.5 dihydrolipoyl dehydrogenase compare
BWI76_RS05645 +0.6 2.5 fructuronate reductase compare
BWI76_RS21535 +0.6 2.3 inner membrane protein YpjD compare
BWI76_RS11810 +0.6 1.6 outer membrane protein OmpW compare
BWI76_RS17530 +0.6 1.8 hypothetical protein compare
BWI76_RS16335 +0.6 1.4 division septum protein Blr compare
BWI76_RS00995 +0.6 1.6 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS24580 +0.6 3.5 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS08260 +0.6 0.8 LysR family transcriptional regulator compare
BWI76_RS19885 +0.6 3.3 multidrug ABC transporter permease/ATP-binding protein conserved
BWI76_RS09360 +0.6 2.3 hypothetical protein compare
BWI76_RS09730 +0.6 1.0 pyruvate formate lyase 1-activating protein compare
BWI76_RS12235 +0.6 1.2 hypothetical protein compare
BWI76_RS09595 +0.6 2.6 macrolide transporter subunit MacA compare
BWI76_RS23015 +0.6 1.2 cobalt transporter ATP-binding subunit compare
BWI76_RS22455 +0.6 3.7 TonB-dependent receptor compare
BWI76_RS21485 +0.6 3.2 DUF4154 domain-containing protein compare
BWI76_RS19900 +0.5 2.1 FAD:protein FMN transferase compare
BWI76_RS02540 +0.5 3.4 GTPase HflX compare
BWI76_RS21075 +0.5 1.4 membrane protein compare
BWI76_RS26605 +0.5 2.8 16S rRNA (guanine(1516)-N(2))-methyltransferase compare
BWI76_RS02630 +0.5 3.0 PTS ascorbate transporter subunit IIA compare
BWI76_RS01775 +0.5 0.8 hypothetical protein compare
BWI76_RS10430 +0.5 1.9 thiol:disulfide interchange protein DsbG compare
BWI76_RS22530 +0.5 2.2 macrolide ABC transporter permease/ATP-binding protein MacB compare
BWI76_RS16910 +0.5 0.9 2-keto-4-pentenoate hydratase compare
BWI76_RS08945 +0.5 3.7 catecholate siderophore receptor Fiu compare
BWI76_RS20970 +0.5 1.1 phosphoribosylglycinamide formyltransferase compare
BWI76_RS20460 +0.5 1.6 acetyl-CoA C-acyltransferase FadI compare
BWI76_RS21130 +0.5 1.2 Fe-S assembly protein IscX compare
BWI76_RS21340 +0.5 0.8 SoxR reducing system protein RseC compare
BWI76_RS13480 +0.5 1.2 XRE family transcriptional regulator compare
BWI76_RS17615 +0.5 1.3 RNA pseudouridine synthase compare
BWI76_RS08865 +0.5 2.8 ABC transporter inner membrane compare
BWI76_RS11680 +0.5 2.7 succinylglutamate-semialdehyde dehydrogenase compare
BWI76_RS13265 +0.5 2.1 hypothetical protein compare
BWI76_RS18425 +0.5 1.4 phosphohydrolase compare
BWI76_RS09110 +0.5 2.4 glutathione ABC transporter permease GsiD compare
BWI76_RS19600 +0.5 3.1 hypothetical protein compare
BWI76_RS21565 +0.5 0.9 outer membrane protein assembly factor BamE compare
BWI76_RS12180 +0.5 3.5 membrane protein compare
BWI76_RS06680 +0.5 0.7 hypothetical protein compare
BWI76_RS13065 +0.5 1.9 LysR family transcriptional regulator compare
BWI76_RS16025 +0.5 0.6 triphosphoribosyl-dephospho-CoA synthase compare
BWI76_RS23470 +0.5 4.4 hypothetical protein compare
BWI76_RS27515 +0.5 3.9 glycerol kinase compare
BWI76_RS08880 +0.5 2.5 secretion protein HlyD compare
BWI76_RS23560 +0.5 2.0 hypothetical protein compare
BWI76_RS15445 +0.5 1.8 hypothetical protein compare
BWI76_RS05485 +0.5 2.7 transpeptidase compare
BWI76_RS17045 +0.5 1.1 hypothetical protein compare
BWI76_RS18385 +0.5 0.9 hypothetical protein compare
BWI76_RS26875 +0.5 0.9 dipeptide ABC transporter permease DppC compare
BWI76_RS25080 +0.5 2.6 tRNA pseudouridine(55) synthase compare
BWI76_RS17795 +0.5 1.9 ribonuclease D compare
BWI76_RS25510 +0.5 2.0 oxidoreductase compare
BWI76_RS24335 +0.5 2.5 two-component system response regulator QseB compare
BWI76_RS22135 +0.5 1.2 transport-associated protein compare
BWI76_RS13515 +0.5 2.3 amino acid permease compare
BWI76_RS10730 +0.5 2.0 bifunctional glucose-1-phosphatase/inositol phosphatase compare
BWI76_RS08395 +0.5 1.3 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS22875 +0.5 3.1 serine transporter compare
BWI76_RS23965 +0.5 1.6 arginine exporter protein compare
BWI76_RS20795 +0.5 0.9 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS17210 +0.5 2.6 dsDNA-mimic protein compare
BWI76_RS16660 +0.5 1.0 SfnB family sulfur acquisition oxidoreductase compare
BWI76_RS12665 +0.5 1.6 hypothetical protein compare
BWI76_RS01560 +0.5 1.3 Rsd/AlgQ family anti-sigma factor compare
BWI76_RS23505 +0.5 4.2 ferrous iron transporter B compare
BWI76_RS26505 +0.5 1.3 nickel ABC transporter permease subunit NikB compare
BWI76_RS10650 +0.5 1.8 PTS fructose-like transporter subunit EIIB compare
BWI76_RS21690 +0.5 1.5 hypothetical protein compare
BWI76_RS21490 +0.5 3.9 GGDEF domain-containing protein compare
BWI76_RS17510 +0.5 2.6 selenium metabolism hydrolase compare
BWI76_RS15450 +0.5 2.0 hypothetical protein compare
BWI76_RS06885 +0.5 1.3 TonB family protein compare


Specific Phenotypes

For 10 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms