Experiment set8IT029 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 5mM L-Glutamine and 5mM L-Arginine

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +1.7 8.5 acetate--CoA ligase family protein compare
MMP_RS07125 +1.3 5.3 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS07875 +1.2 6.2 hypothetical protein compare
MMP_RS07115 +1.2 5.7 MBL fold metallo-hydrolase compare
MMP_RS05640 +1.1 5.7 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS05355 +1.1 1.1 hypothetical protein compare
MMP_RS06395 +1.1 3.7 ThiF family adenylyltransferase compare
MMP_RS07605 +1.0 3.2 diadenylate cyclase compare
MMP_RS06575 +1.0 3.0 fluoride efflux transporter CrcB compare
MMP_RS01940 +0.9 3.4 MoxR family ATPase compare
MMP_RS01885 +0.9 5.5 Gfo/Idh/MocA family oxidoreductase compare
MMP_RS01895 +0.9 6.6 flippase compare
MMP_RS04720 +0.9 2.6 DedA family protein compare
MMP_RS01875 +0.9 5.7 N-acetyltransferase compare
MMP_RS08440 +0.9 2.6 cell division protein SepF compare
MMP_RS03615 +0.9 6.3 4Fe-4S binding protein compare
MMP_RS00825 +0.8 3.1 fumarylacetoacetate hydrolase family protein compare
MMP_RS01910 +0.8 5.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS06570 +0.8 3.4 DUF190 domain-containing protein compare
MMP_RS00185 +0.8 5.4 potassium channel protein compare
MMP_RS07390 +0.8 1.7 cell division protein FtsZ compare
MMP_RS00450 +0.8 1.6 4Fe-4S binding protein compare
MMP_RS03215 +0.8 4.9 MBL fold metallo-hydrolase compare
MMP_RS06535 +0.8 2.9 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS01620 +0.8 1.6 hypothetical protein compare
MMP_RS06600 +0.8 1.3 class III signal peptide-containing protein compare
MMP_RS07130 +0.7 3.3 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS08090 +0.7 3.4 hypothetical protein compare
MMP_RS01975 +0.7 5.7 hypothetical protein compare
MMP_RS06965 +0.7 3.5 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS01905 +0.7 5.4 glycosyltransferase compare
MMP_RS01100 +0.7 1.0 ABC transporter ATP-binding protein compare
MMP_RS08775 +0.7 2.8 methanogenesis marker 9 domain-containing protein compare
MMP_RS07890 +0.7 1.8 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS01880 +0.7 4.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
MMP_RS01925 +0.7 4.0 DUF1616 domain-containing protein compare
MMP_RS01095 +0.6 3.7 iron ABC transporter permease compare
MMP_RS00880 +0.6 2.6 ribosome assembly RNA-binding protein YhbY compare
MMP_RS08155 +0.6 2.2 hypothetical protein compare
MMP_RS01865 +0.6 1.1 GPR1/FUN34/YaaH family transporter compare
MMP_RS06670 +0.6 2.0 glucose-6-phosphate isomerase compare
MMP_RS08930 +0.6 1.0 hypothetical protein compare
MMP_RS01775 +0.6 1.2 TIGR00297 family protein compare
MMP_RS05970 +0.6 2.8 class II SORL domain-containing protein compare
MMP_RS03840 +0.6 2.5 hypothetical protein compare
MMP_RS03280 +0.6 3.5 pyridoxamine 5'-phosphate oxidase family protein compare
MMP_RS01930 +0.6 4.5 hypothetical protein compare
MMP_RS01460 +0.6 1.8 hypothetical protein compare
MMP_RS02100 +0.6 2.5 metallophosphoesterase compare
MMP_RS09025 +0.6 0.8 hypothetical protein compare
MMP_RS01640 +0.6 3.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMP_RS00660 +0.6 3.1 alkaline phosphatase family protein compare
MMP_RS02490 +0.6 2.4 hypothetical protein compare
MMP_RS01920 +0.6 4.6 glycosyltransferase family 2 protein compare
MMP_RS07120 +0.6 3.1 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS01900 +0.6 4.2 hypothetical protein compare
MMP_RS04850 +0.6 4.6 UPF0254 family protein compare
MMP_RS03245 +0.6 2.5 DNA repair and recombination protein RadB compare
MMP_RS01950 +0.6 3.6 hypothetical protein compare
MMP_RS03965 +0.5 1.3 hypothetical protein compare
MMP_RS07620 +0.5 1.6 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS08595 +0.5 0.7 flagellar protein C compare
MMP_RS05110 +0.5 2.8 16S ribosomal RNA methyltransferase A compare
MMP_RS06900 +0.5 1.5 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS08455 +0.5 2.3 multiprotein bridging factor aMBF1 compare
MMP_RS06550 +0.5 3.1 AMP-binding protein compare
MMP_RS01540 +0.5 1.5 DUF504 domain-containing protein compare
MMP_RS02675 +0.5 1.1 hypothetical protein compare
MMP_RS00725 +0.5 1.8 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS01945 +0.5 2.9 DUF4350 domain-containing protein compare
MMP_RS08275 +0.5 2.0 hypothetical protein compare
MMP_RS07700 +0.5 3.0 DUF1188 domain-containing protein compare
MMP_RS08265 +0.5 1.6 rubrerythrin compare
MMP_RS06165 +0.5 2.8 ABC transporter permease compare
MMP_RS00315 +0.5 2.5 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS06585 +0.5 0.9 DMT family protein compare
MMP_RS02310 +0.5 0.9 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS02495 +0.5 1.4 hypothetical protein compare
MMP_RS04740 +0.5 1.8 DUF473 domain-containing protein compare
MMP_RS01030 +0.5 1.6 MTAP family purine nucleoside phosphorylase compare
MMP_RS06745 +0.5 1.5 DUF2119 domain-containing protein compare
MMP_RS03010 +0.5 3.0 cupin domain-containing protein compare
MMP_RS00960 +0.5 1.8 iron export ABC transporter permease subunit FetB compare
MMP_RS06725 +0.5 3.2 hypothetical protein compare
MMP_RS08315 +0.5 1.7 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS08705 +0.5 2.5 sulfopyruvate decarboxylase subunit beta compare
MMP_RS05525 +0.5 2.2 calcium/sodium antiporter compare
MMP_RS00800 +0.5 2.8 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS08620 +0.5 2.1 flagellar accessory protein FlaH compare
MMP_RS03385 +0.5 0.6 cation diffusion facilitator family transporter compare
MMP_RS01435 +0.5 2.1 DMT family transporter compare
MMP_RS04520 +0.5 1.3 nucleoside deaminase compare
MMP_RS08890 +0.5 3.5 glycosyltransferase family 4 protein compare
MMP_RS07820 +0.5 2.2 UPF0104 family protein compare
MMP_RS01970 +0.5 3.6 TIGR04279 domain-containing protein compare
MMP_RS08175 +0.5 2.3 7-cyano-7-deazaguanine synthase compare
MMP_RS01915 +0.5 3.7 DUF354 domain-containing protein compare
MMP_RS06480 +0.5 2.2 ABC transporter substrate-binding protein compare
MMP_RS00100 +0.5 2.7 tRNA pseudouridine(13) synthase TruD compare
MMP_RS01685 +0.5 1.4 indolepyruvate oxidoreductase subunit beta compare
MMP_RS06000 +0.4 2.4 divalent-cation tolerance protein CutA compare
MMP_RS07895 +0.4 1.5 cytochrome c compare
MMP_RS06110 +0.4 1.1 ATP-dependent protease LonB compare
MMP_RS00955 +0.4 2.9 coenzyme gamma-F420-2:alpha-L-glutamate ligase compare
MMP_RS07695 +0.4 2.2 DUF3236 domain-containing protein compare
MMP_RS06440 +0.4 2.5 CBS domain-containing protein compare
MMP_RS01935 +0.4 2.9 DUF58 domain-containing protein compare
MMP_RS08500 +0.4 1.5 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS05980 +0.4 2.1 ferritin compare
MMP_RS01130 +0.4 1.9 flavoprotein compare
MMP_RS06530 +0.4 1.5 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMP_RS03065 +0.4 1.1 AzlC family ABC transporter permease compare
MMP_RS02390 +0.4 1.7 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS07540 +0.4 1.0 CBS domain-containing protein compare
MMP_RS00125 +0.4 0.6 DUF2798 domain-containing protein compare
MMP_RS04550 +0.4 3.1 S-layer protein compare
MMP_RS01955 +0.4 1.0 hypothetical protein compare
MMP_RS00635 +0.4 1.8 energy-coupling factor transporter transmembrane protein EcfT compare
MMP_RS00665 +0.4 1.7 hypothetical protein compare
MMP_RS03765 +0.4 2.0 CopG family ribbon-helix-helix protein compare
MMP_RS02595 +0.4 0.6 putative zinc-binding protein compare
MMP_RS02915 +0.4 2.0 amino acid ABC transporter permease compare
MMP_RS01980 +0.4 2.7 trimeric intracellular cation channel family protein compare
MMP_RS06500 +0.4 2.5 ATP-binding protein compare
MMP_RS08670 +0.4 2.4 metallophosphoesterase compare
MMP_RS06555 +0.4 1.2 cupin domain-containing protein compare
MMP_RS08605 +0.4 1.8 flagellar protein E compare
MMP_RS00940 +0.4 2.1 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein compare
MMP_RS01060 +0.4 2.1 calcium/sodium antiporter compare
MMP_RS06610 +0.4 0.9 DUF2334 domain-containing protein compare
MMP_RS00395 +0.4 0.6 MGMT family protein compare
MMP_RS06005 +0.4 1.4 heavy-metal-associated domain-containing protein compare
MMP_RS00795 +0.4 2.1 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS02890 +0.4 2.1 TIGR00296 family protein compare
MMP_RS04145 +0.4 0.6 hypothetical protein compare
MMP_RS03870 +0.4 1.3 purine NTPase compare
MMP_RS06520 +0.4 1.4 DUF1786 domain-containing protein compare
MMP_RS06435 +0.4 1.6 CBS domain-containing protein compare
MMP_RS05720 +0.3 1.6 signal recognition particle subunit SRP19/SEC65 family protein compare
MMP_RS05990 +0.3 1.3 DsrE family protein compare
MMP_RS02745 +0.3 0.9 hypothetical protein compare
MMP_RS05940 +0.3 1.6 corrinoid protein compare
MMP_RS05140 +0.3 1.2 helix-turn-helix transcriptional regulator compare
MMP_RS05470 +0.3 1.9 DUF523 and DUF1722 domain-containing protein compare
MMP_RS01805 +0.3 0.9 NUDIX hydrolase compare
MMP_RS08640 +0.3 1.8 TIM barrel protein compare
MMP_RS08470 +0.3 1.6 ATP-binding cassette domain-containing protein compare
MMP_RS05275 +0.3 2.2 AI-2E family transporter compare
MMP_RS07075 +0.3 1.1 phosphomannomutase/phosphoglucomutase compare
MMP_RS06310 +0.3 1.3 NAD(P)/FAD-dependent oxidoreductase compare
MMP_RS03270 +0.3 1.6 ADP-ribosylglycohydrolase family protein compare
MMP_RS07915 +0.3 1.2 DUF4870 domain-containing protein compare
MMP_RS00085 +0.3 2.0 DNA cytosine methyltransferase compare
MMP_RS08260 +0.3 1.5 DUF99 family protein compare
MMP_RS03620 +0.3 1.3 hypothetical protein compare
MMP_RS00380 +0.3 1.1 P-II family nitrogen regulator compare
MMP_RS01525 +0.3 0.6 nucleoside-diphosphate kinase compare
MMP_RS02815 +0.3 0.7 hypothetical protein compare
MMP_RS04305 +0.3 0.7 hypothetical protein compare
MMP_RS06150 +0.3 1.7 hypothetical protein compare
MMP_RS00630 +0.3 1.9 ECF transporter S component compare
MMP_RS02940 +0.3 1.7 TatD family hydrolase compare
MMP_RS08755 +0.3 2.0 sodium:solute symporter family protein compare
MMP_RS08130 +0.3 1.4 IGHMBP2 family helicase compare
MMP_RS08575 +0.3 1.9 hypothetical protein compare
MMP_RS00335 +0.3 1.4 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMP_RS02755 +0.3 1.8 ABC transporter permease compare
MMP_RS03785 +0.3 0.7 cupin domain-containing protein compare
MMP_RS00700 +0.3 1.3 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS07615 +0.3 0.9 energy-coupling factor ABC transporter permease compare
MMP_RS06080 +0.3 1.9 radical SAM protein compare
MMP_RS06940 +0.3 1.0 polyprenyl diphosphate synthase compare
MMP_RS08835 +0.3 1.0 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS07850 +0.3 0.7 prephenate dehydratase compare
MMP_RS04690 +0.3 0.8 class III signal peptide-containing protein compare
MMP_RS08555 +0.3 1.0 hypothetical protein compare
MMP_RS06290 +0.3 1.1 DNA repair and recombination protein RadA compare
MMP_RS01860 +0.3 1.7 hypothetical protein compare
MMP_RS02645 +0.3 1.4 ArsR family transcriptional regulator compare
MMP_RS08975 +0.3 1.0 hypothetical protein compare
MMP_RS05820 +0.3 1.1 RNA-binding transcriptional accessory protein compare
MMP_RS02985 +0.3 0.9 hypothetical protein compare
MMP_RS04165 +0.3 0.9 TetR/AcrR family transcriptional regulator compare
MMP_RS03900 +0.3 1.1 minichromosome maintenance protein MCM compare
MMP_RS01335 +0.3 0.5 prefoldin subunit beta compare
MMP_RS04475 +0.3 1.1 nitrogen fixation compare
MMP_RS03990 +0.3 1.4 recombinase family protein compare
MMP_RS00145 +0.3 0.9 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS05600 +0.3 2.0 AglZ/HisF2 family acetamidino modification protein compare
MMP_RS03115 +0.3 1.9 hypothetical protein compare
MMP_RS01055 +0.3 1.0 hypothetical protein compare
MMP_RS06910 +0.3 1.3 RlmF-related methyltransferase compare
MMP_RS04195 +0.3 0.7 flavodoxin compare
MMP_RS04325 +0.2 1.3 MtaA/CmuA family methyltransferase compare
MMP_RS07590 +0.2 1.4 hypothetical protein compare
MMP_RS01580 +0.2 1.3 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS05580 +0.2 2.1 glycosyltransferase compare
MMP_RS00375 +0.2 1.3 ammonium transporter compare
MMP_RS05170 +0.2 1.2 lysine exporter LysO family protein compare
MMP_RS00560 +0.2 1.1 cation:proton antiporter compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 L-Glutamine across organisms