Experiment set8IT028 for Methanococcus maripaludis S2

Compare to:

Mc formate, casamino free, with 5mM L-Glutamine and 5mM L-Arginine

200 most important genes:

  gene name fitness t score description  
MMP_RS07345 -4.3 -11.0 glycine synthesis protein GlyXL (from data) compare
MMP_RS05550 -4.1 -0.8 cation:proton antiporter compare
MMP_RS03450 -4.0 -3.5 glycine synthesis protein GlyXS (from data) compare
MMP_RS03015 -3.9 -15.2 GTP 3' 8-cyclase MoaA compare
MMP_RS05515 -3.8 -8.9 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS01175 -3.6 -6.5 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS08165 -3.4 -3.8 phosphoglycerate dehydrogenase compare
MMP_RS06680 -3.4 -19.7 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS00300 -3.3 -1.1 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS05500 -3.3 -12.4 2-isopropylmalate synthase compare
MMP_RS06355 -3.3 -2.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS06345 -3.3 -16.0 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06685 -3.2 -17.6 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS02900 -3.2 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06270 -3.2 -7.5 TIGR00300 family protein compare
MMP_RS06350 -3.2 -7.7 HesA/MoeB/ThiF family protein compare
MMP_RS06715 -3.1 -18.6 cache domain-containing protein compare
MMP_RS06720 -3.0 -12.5 response regulator transcription factor compare
MMP_RS03640 -3.0 -5.7 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS01020 -3.0 -1.6 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS06700 -3.0 -18.0 hypothetical protein compare
MMP_RS01455 -2.9 -11.9 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS07185 -2.9 -15.4 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS02010 -2.9 -10.8 PHP domain-containing protein compare
MMP_RS07635 -2.8 -9.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS04215 -2.8 -12.8 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS04900 -2.8 -20.4 hypothetical protein compare
MMP_RS05425 -2.7 -6.2 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS00295 -2.7 -2.8 gamma carbonic anhydrase family protein compare
MMP_RS02355 -2.7 -4.7 30S ribosomal protein S27ae compare
MMP_RS01500 -2.7 -3.8 CBS domain-containing protein compare
MMP_RS04605 -2.7 -5.6 cobalt ECF transporter T component CbiQ compare
MMP_RS03035 -2.7 -5.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS07845 -2.6 -2.4 LL-diaminopimelate aminotransferase compare
MMP_RS07365 -2.6 -15.6 2-phosphoglycerate kinase compare
MMP_RS07005 -2.6 -0.8 4Fe-4S binding protein compare
MMP_RS08635 -2.6 -2.7 UbiA family prenyltransferase compare
MMP_RS08745 -2.5 -8.8 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS03435 -2.5 -2.4 ketol-acid reductoisomerase compare
MMP_RS06175 -2.5 -7.0 winged helix-turn-helix transcriptional regulator compare
MMP_RS07555 -2.5 -1.1 monovalent cation/H+ antiporter subunit E compare
MMP_RS07445 -2.5 -7.5 helix-turn-helix domain-containing protein compare
MMP_RS06705 -2.5 -8.4 formate/nitrite transporter family protein compare
MMP_RS02235 -2.4 -9.7 CBS domain-containing protein compare
MMP_RS01755 -2.4 -1.9 DUF2097 domain-containing protein compare
MMP_RS07730 -2.4 -2.3 pyruvate synthase subunit beta compare
MMP_RS04620 -2.4 -12.9 cobalt transporter CbiM compare
MMP_RS05875 -2.4 -5.8 hydroxyethylthiazole kinase compare
MMP_RS04615 -2.4 -3.7 PDGLE domain-containing protein compare
MMP_RS05555 -2.3 -1.6 DUF4040 domain-containing protein compare
MMP_RS00040 -2.3 -6.0 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS01195 -2.2 -1.8 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS05765 -2.2 -7.1 M42 family metallopeptidase compare
MMP_RS06375 -2.2 -6.9 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS06105 -2.2 -8.4 hydrogenase maturation peptidase HycI compare
MMP_RS00695 -2.2 -1.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS01545 -2.1 -1.5 CBS domain-containing protein compare
MMP_RS02280 -2.1 -1.2 DUF211 domain-containing protein compare
MMP_RS09055 -2.1 -1.5 CAP domain-containing protein compare
MMP_RS02195 -2.0 -4.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08720 -2.0 -2.2 4Fe-4S binding protein compare
MMP_RS06730 -2.0 -2.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS05060 -2.0 -10.0 AAA family ATPase compare
MMP_RS05085 -2.0 -9.6 AAA family ATPase compare
MMP_RS08460 -2.0 -4.0 proteasome-activating nucleotidase compare
MMP_RS05095 -2.0 -7.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS06925 -1.9 -3.1 ribonuclease VapC4 compare
MMP_RS07575 -1.9 -6.6 RNA ligase partner protein compare
MMP_RS07525 -1.9 -8.8 4Fe-4S binding protein compare
MMP_RS05090 -1.9 -7.7 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS01220 -1.9 -7.0 hypothetical protein compare
MMP_RS05930 -1.8 -2.6 3-isopropylmalate dehydratase large subunit compare
MMP_RS05080 -1.8 -10.2 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS06840 -1.8 -1.2 DNA-directed RNA polymerase subunit N compare
MMP_RS05100 -1.8 -12.3 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS01265 -1.8 -2.4 hypothetical protein compare
MMP_RS06295 -1.8 -6.6 methanogenesis marker 14 protein compare
MMP_RS07380 -1.8 -2.3 transcription elongation factor Spt5 compare
MMP_RS05075 -1.8 -12.7 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS03600 -1.8 -2.4 triose-phosphate isomerase compare
MMP_RS04870 -1.7 -5.0 TIGR02253 family HAD-type hydrolase compare
MMP_RS01005 -1.7 -1.7 riboflavin synthase compare
MMP_RS03445 -1.7 -1.2 methanogenesis marker 17 protein compare
MMP_RS00620 -1.7 -7.9 4Fe-4S binding protein compare
MMP_RS04780 -1.7 -3.9 ribonuclease P compare
MMP_RS00685 -1.7 -3.8 2-phospho-L-lactate guanylyltransferase compare
MMP_RS02800 -1.7 -4.3 nucleotidyltransferase domain-containing protein compare
MMP_RS09020 -1.7 -1.7 hypothetical protein compare
MMP_RS08715 -1.7 -1.8 formylmethanofuran dehydrogenase subunit B compare
MMP_RS08820 -1.7 -5.0 hypothetical protein compare
MMP_RS08330 -1.7 -4.5 NADH-quinone oxidoreductase subunit H compare
MMP_RS03315 -1.7 -1.2 ferrous iron transport protein A compare
MMP_RS06400 -1.7 -1.6 4Fe-4S binding protein compare
MMP_RS07735 -1.7 -0.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08300 -1.7 -1.3 metal-sulfur cluster assembly factor compare
MMP_RS01610 -1.6 -3.7 hypothetical protein compare
MMP_RS05055 -1.6 -11.1 DUF166 domain-containing protein compare
MMP_RS07630 -1.6 -1.8 ATP-binding cassette domain-containing protein compare
MMP_RS05065 -1.6 -3.6 CooT family nickel-binding protein compare
MMP_RS05070 -1.6 -6.5 4Fe-4S dicluster domain-containing protein compare
MMP_RS04585 -1.6 -8.7 AIR synthase related protein compare
MMP_RS03025 -1.6 -5.5 molybdenum cofactor guanylyltransferase compare
MMP_RS05265 -1.6 -2.5 2-isopropylmalate synthase compare
MMP_RS01085 -1.6 -2.1 hypothetical protein compare
MMP_RS05540 -1.5 -2.4 hypothetical protein compare
MMP_RS01365 -1.5 -3.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS02930 -1.5 -2.3 class I SAM-dependent methyltransferase compare
MMP_RS01325 -1.5 -2.6 dihydroneopterin aldolase family protein compare
MMP_RS06975 -1.5 -2.7 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS00115 -1.5 -8.8 radical SAM protein compare
MMP_RS01380 -1.5 -4.5 PHP domain-containing protein compare
MMP_RS01700 -1.4 -0.7 dihydroxy-acid dehydratase compare
MMP_RS03485 -1.4 -4.5 TIGR00267 family protein compare
MMP_RS04875 -1.4 -5.3 energy-converting hydrogenase B subunit P compare
MMP_RS04710 -1.4 -1.9 hypothetical protein compare
MMP_RS06200 -1.4 -5.4 M24 family metallopeptidase compare
MMP_RS03550 -1.4 -1.5 DUF2124 domain-containing protein compare
MMP_RS07600 -1.3 -2.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS01985 -1.3 -4.8 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS02340 -1.3 -2.0 DNA-directed RNA polymerase subunit E'' compare
MMP_RS07710 -1.3 -4.8 cell division protein FtsZ compare
MMP_RS06020 -1.3 -4.5 archaeoflavoprotein AfpA compare
MMP_RS00895 -1.3 -3.1 hypothetical protein compare
MMP_RS00290 -1.3 -5.1 hypothetical protein compare
MMP_RS06230 -1.3 -2.0 helix-turn-helix domain-containing protein compare
MMP_RS08790 -1.2 -1.9 translation initiation factor IF-2 subunit alpha compare
MMP_RS05250 -1.2 -1.3 NFYB/HAP3 family transcription factor subunit compare
MMP_RS02170 -1.2 -3.7 CBS domain-containing protein compare
MMP_RS02240 -1.2 -2.4 methanogenesis marker 7 protein compare
MMP_RS01795 -1.2 -1.5 methanogenesis marker 6 protein compare
MMP_RS07720 -1.2 -5.8 4Fe-4S binding protein compare
MMP_RS00515 -1.2 -1.0 DUF655 domain-containing protein compare
MMP_RS05430 -1.2 -4.2 TIGR00288 family NYN domain-containing protein compare
MMP_RS05845 -1.2 -2.1 tRNA-intron lyase compare
MMP_RS07535 -1.2 -5.5 4Fe-4S binding protein compare
MMP_RS03960 -1.2 -1.1 hypothetical protein compare
MMP_RS01830 -1.1 -1.6 tRNA-Val compare
MMP_RS06285 -1.1 -1.7 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS03145 -1.1 -4.1 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS06865 -1.1 -1.4 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS08940 -1.1 -1.0 MetS family NSS transporter small subunit compare
MMP_RS00305 -1.1 -1.1 phosphoribosyl-ATP diphosphatase compare
MMP_RS00110 -1.1 -2.5 hypothetical protein compare
MMP_RS04125 -1.0 -4.0 TetR/AcrR family transcriptional regulator compare
MMP_RS05245 -1.0 -5.2 archaeosine biosynthesis radical SAM protein RaSEA compare
MMP_RS02605 -1.0 -0.9 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS04790 -1.0 -6.6 4-hydroxy-tetrahydrodipicolinate reductase compare
MMP_RS08320 -1.0 -3.8 molybdopterin molybdotransferase MoeA compare
MMP_RS00555 -1.0 -2.6 MFS transporter compare
MMP_RS03580 -1.0 -2.9 signal recognition particle-docking protein FtsY compare
MMP_RS08645 -1.0 -4.5 UPF0179 family protein compare
MMP_RS05850 -1.0 -1.9 Ldh family oxidoreductase compare
MMP_RS08725 -1.0 -1.5 Ni/Fe hydrogenase subunit alpha compare
MMP_RS08615 -1.0 -1.1 flagellar protein G compare
MMP_RS01385 -1.0 -0.4 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS00535 -1.0 -2.3 TIGR00375 family protein compare
MMP_RS02175 -1.0 -0.7 DUF1611 domain-containing protein compare
MMP_RS07580 -0.9 -2.0 DUF356 domain-containing protein compare
MMP_RS02885 -0.9 -6.8 molybdopterin biosynthesis protein compare
MMP_RS03080 -0.9 -1.7 universal stress protein compare
MMP_RS06340 -0.9 -5.2 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01790 -0.9 -2.5 restriction endonuclease compare
MMP_RS07200 -0.9 -3.9 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS01440 -0.9 -2.2 NAAT family transporter compare
MMP_RS01800 -0.9 -1.7 TIGR00303 family protein compare
MMP_RS00130 -0.9 -0.9 nickel-responsive transcriptional regulator NikR compare
MMP_RS02165 -0.9 -4.0 tRNA-dihydrouridine synthase compare
MMP_RS02190 -0.9 -1.7 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS03475 -0.9 -0.6 hypothetical protein compare
MMP_RS00965 -0.9 -1.2 hypothetical protein compare
MMP_RS01250 -0.9 -3.1 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS01445 -0.9 -4.4 hypothetical protein compare
MMP_RS00455 -0.9 -4.0 orotate phosphoribosyltransferase-like protein compare
MMP_RS04255 -0.9 -3.3 coenzyme F420 hydrogenase subunit beta compare
MMP_RS01720 -0.9 -1.7 replication factor C large subunit compare
MMP_RS08350 -0.8 -0.7 hypothetical protein compare
MMP_RS01725 -0.8 -3.1 class I SAM-dependent methyltransferase family protein compare
MMP_RS00705 -0.8 -1.5 hypothetical protein compare
MMP_RS07960 -0.8 -3.2 sugar phosphate isomerase/epimerase compare
MMP_RS01745 -0.8 -2.4 AMP phosphorylase compare
MMP_RS04890 -0.8 -0.5 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS05285 -0.8 -3.5 MMPL family transporter compare
MMP_RS02345 -0.8 -2.3 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS03305 -0.8 -2.3 winged helix-turn-helix domain-containing protein compare
MMP_RS04775 -0.8 -2.0 adenosylhomocysteinase compare
MMP_RS05280 -0.7 -4.2 COG1361 S-layer family protein compare
MMP_RS01240 -0.7 -0.7 7-cyano-7-deazaguanine synthase QueC compare
MMP_RS07900 -0.7 -1.1 YeeE/YedE family protein compare
MMP_RS00570 -0.7 -1.1 protein-L-isoaspartate O-methyltransferase compare
MMP_RS07385 -0.7 -1.6 protein translocase SEC61 complex subunit gamma compare
MMP_RS03555 -0.7 -3.0 transcriptional regulator compare
MMP_RS03140 -0.7 -4.3 hypothetical protein compare
MMP_RS05865 -0.7 -0.8 hypothetical protein compare
MMP_RS00720 -0.7 -3.3 metal-dependent hydrolase compare
MMP_RS07705 -0.7 -2.6 transcriptional regulator compare
MMP_RS00810 -0.7 -3.2 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS03205 -0.7 -0.9 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS00120 -0.7 -2.6 LysR family transcriptional regulator compare
MMP_RS00050 -0.7 -2.5 AarF/UbiB family protein compare
MMP_RS02875 -0.7 -3.0 chorismate pyruvate-lyase family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 L-Glutamine across organisms