Experiment set7IT073 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_16995 -4.3 -2.9 protein YrbN compare
IAI47_05070 -3.5 -1.1 outer membrane protein assembly factor BamB compare
IAI47_08085 -3.4 -5.7 helix-turn-helix domain-containing protein compare
IAI47_00760 -3.4 -5.9 envelope stress response regulator transcription factor CpxR compare
IAI47_01780 -2.4 -3.6 Fe-S biogenesis protein NfuA compare
IAI47_11655 -2.4 -2.8 hypothetical protein compare
IAI47_08705 -2.4 -11.7 carboxy terminal-processing peptidase compare
IAI47_01365 -2.3 -2.2 inorganic phosphate transporter PitA compare
IAI47_05520 -2.2 -1.4 tRNA-Ala compare
IAI47_07020 -2.2 -1.4 hypothetical protein compare
IAI47_19945 -2.2 -1.0 hypothetical protein compare
IAI47_09360 -2.2 -1.4 peptide ABC transporter ATP-binding protein SapF compare
IAI47_16095 -2.1 -4.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_15970 -2.0 -2.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_17020 -2.0 -4.0 30S ribosome-binding factor RbfA compare
IAI47_08445 -1.8 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_00465 -1.8 -2.9 ribosome-dependent GTPase TypA compare
IAI47_20250 -1.7 -2.5 DeoR family transcriptional regulator compare
IAI47_00875 -1.7 -1.9 met regulon transcriptional regulator MetJ compare
IAI47_17215 -1.6 -0.8 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI47_04335 -1.6 -3.6 tRNA-Arg compare
IAI47_04705 -1.6 -1.3 hypothetical protein compare
IAI47_05155 -1.5 -11.1 polyphosphate kinase 1 compare
IAI47_02585 -1.5 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_21235 -1.5 -1.7 hypothetical protein compare
IAI47_03375 -1.4 -7.8 peptide chain release factor 3 compare
IAI47_00780 -1.4 -4.0 6-phosphofructokinase compare
IAI47_03610 -1.4 -4.6 YqgE/AlgH family protein compare
IAI47_20595 -1.4 -3.8 GhoT/OrtT family toxin compare
IAI47_11475 -1.4 -0.9 hypothetical protein compare
IAI47_08800 -1.4 -2.7 YoaH family protein compare
IAI47_15485 -1.4 -1.3 molecular chaperone Skp compare
IAI47_09635 -1.4 -4.2 hypothetical protein compare
IAI47_04400 -1.4 -5.3 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_13050 -1.3 -4.1 YbjN domain-containing protein compare
IAI47_11450 -1.3 -3.8 ankyrin repeat domain-containing protein compare
IAI47_17560 -1.3 -1.2 ROK family transcriptional regulator compare
IAI47_20600 -1.3 -1.8 hypothetical protein compare
IAI47_00770 -1.3 -0.9 general stress protein compare
IAI47_08680 -1.3 -5.9 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_11375 -1.3 -1.1 hypothetical protein compare
IAI47_06655 -1.2 -2.7 1-phosphofructokinase compare
IAI47_05660 -1.2 -6.3 serine protease compare
IAI47_21115 -1.2 -2.5 arsenate reductase (glutaredoxin) compare
IAI47_04300 -1.2 -5.1 recombinase RecA compare
IAI47_06395 -1.2 -1.2 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_11415 -1.2 -1.2 hypothetical protein compare
IAI47_00460 -1.2 -1.8 glutamate--ammonia ligase compare
IAI47_18840 -1.2 -2.0 membrane protein insertion efficiency factor YidD compare
IAI47_14325 -1.2 -1.7 ribosome-associated protein YbcJ compare
IAI47_04835 -1.2 -5.9 ATP-dependent RNA helicase SrmB compare
IAI47_07525 -1.1 -2.1 conjugal transfer protein TraD compare
IAI47_19935 -1.1 -3.0 hypothetical protein compare
IAI47_21450 -1.1 -1.1 general stress protein compare
IAI47_14805 -1.1 -5.3 tRNA guanosine(34) transglycosylase Tgt compare
IAI47_01475 -1.1 -4.9 MurR/RpiR family transcriptional regulator compare
IAI47_18400 -1.1 -1.9 tyrosine recombinase XerC compare
IAI47_19930 -1.1 -3.5 adhesin compare
IAI47_14295 -1.1 -1.7 hypothetical protein compare
IAI47_17900 -1.1 -1.2 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_18530 -1.0 -2.0 thioredoxin TrxA compare
IAI47_07530 -1.0 -4.2 type III restriction-modification system endonuclease compare
IAI47_08355 -1.0 -2.4 flagellar protein FlhE compare
IAI47_13695 -1.0 -0.4 colicin uptake protein TolR compare
IAI47_17005 -1.0 -4.8 polyribonucleotide nucleotidyltransferase compare
IAI47_21880 -1.0 -0.5 ParA family protein compare
IAI47_12920 -1.0 -2.8 thioredoxin-disulfide reductase compare
IAI47_10835 -1.0 -0.6 tRNA-Val compare
IAI47_12260 -1.0 -3.2 hypothetical protein compare
IAI47_01820 -1.0 -4.8 two-component system response regulator OmpR compare
IAI47_04800 -1.0 -0.7 RnfH family protein compare
IAI47_21355 -1.0 -2.8 DUF3606 domain-containing protein compare
IAI47_01825 -0.9 -5.4 two-component system sensor histidine kinase EnvZ compare
IAI47_15595 -0.9 -1.1 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_06405 -0.9 -1.8 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_08440 -0.9 -1.0 crossover junction endodeoxyribonuclease RuvC compare
IAI47_06245 -0.9 -2.5 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_05755 -0.9 -2.7 hypothetical protein compare
IAI47_08635 -0.9 -2.6 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI47_10430 -0.9 -1.4 hypothetical protein compare
IAI47_07490 -0.9 -1.5 DNA-binding protein compare
IAI47_21545 -0.9 -5.0 SgcJ/EcaC family oxidoreductase compare
IAI47_10320 -0.9 -0.7 Rrf2 family transcriptional regulator compare
IAI47_18215 -0.9 -1.0 Trk system potassium transporter TrkH compare
IAI47_08450 -0.9 -1.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_05895 -0.8 -2.5 hypothetical protein compare
IAI47_13155 -0.8 -0.8 H-NS histone family protein compare
IAI47_12650 -0.8 -2.8 macrodomain Ter protein MatP compare
IAI47_05830 -0.8 -1.7 hypothetical protein compare
IAI47_11200 -0.8 -2.1 DotU family type IV/VI secretion system protein compare
IAI47_18775 -0.8 -3.7 hypothetical protein compare
IAI47_06135 -0.8 -2.2 phosphohistidine phosphatase SixA compare
IAI47_08755 -0.8 -2.9 DUF986 domain-containing protein compare
IAI47_19365 -0.8 -3.0 DUF1471 domain-containing protein compare
IAI47_18705 -0.8 -4.2 mannitol-1-phosphate 5-dehydrogenase compare
IAI47_07930 -0.8 -0.8 DUF2158 domain-containing protein compare
IAI47_11760 -0.8 -0.8 TonB-dependent siderophore receptor compare
IAI47_07515 -0.8 -2.4 hypothetical protein compare
IAI47_05090 -0.8 -1.9 hypothetical protein compare
IAI47_11310 -0.8 -1.7 redox-regulated ATPase YchF compare
IAI47_18715 -0.8 -1.5 YibL family ribosome-associated protein compare
IAI47_16085 -0.8 -0.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_10565 -0.8 -1.4 DUF4113 domain-containing protein compare
IAI47_10725 -0.8 -1.3 DUF1656 domain-containing protein compare
IAI47_04750 -0.8 -1.3 hypothetical protein compare
IAI47_12770 -0.7 -3.3 MBL fold metallo-hydrolase compare
IAI47_09380 -0.7 -3.2 peptide ABC transporter substrate-binding protein SapA compare
IAI47_07355 -0.7 -2.8 winged helix-turn-helix domain-containing protein compare
IAI47_15155 -0.7 -2.2 DUF943 family protein compare
IAI47_13480 -0.7 -1.7 molybdopterin synthase sulfur carrier subunit compare
IAI47_14060 -0.7 -2.1 twin-arginine translocase subunit TatE compare
IAI47_14070 -0.7 -3.6 GNAT family N-acetyltransferase compare
IAI47_06595 -0.7 -1.8 hypothetical protein compare
IAI47_16410 -0.7 -1.9 YbaK/EbsC family protein compare
IAI47_12110 -0.7 -1.6 ribonuclease E compare
IAI47_03680 -0.7 -3.9 transketolase compare
IAI47_13760 -0.7 -1.6 succinate dehydrogenase membrane anchor subunit compare
IAI47_02090 -0.7 -2.1 elongation factor Tu compare
IAI47_06010 -0.7 -2.8 hypothetical protein compare
IAI47_02475 -0.7 -3.7 AaeX family protein compare
IAI47_00500 -0.7 -5.0 ATP-dependent DNA helicase RecG compare
IAI47_21595 -0.7 -4.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_02990 -0.7 -3.8 hypothetical protein compare
IAI47_10025 -0.7 -3.5 DUF1792 domain-containing protein compare
IAI47_02495 -0.7 -2.8 hypothetical protein compare
IAI47_07030 -0.7 -2.3 HAD family hydrolase compare
IAI47_02515 -0.7 -2.6 transcriptional regulator ArgR compare
IAI47_08065 -0.7 -2.3 acyltransferase compare
IAI47_14710 -0.7 -3.4 YajQ family cyclic di-GMP-binding protein compare
IAI47_21675 -0.7 -2.0 helix-turn-helix domain-containing protein compare
IAI47_11150 -0.7 -1.9 D-threitol dehydrogenase compare
IAI47_18415 -0.7 -1.4 lipoprotein compare
IAI47_02685 -0.7 -2.8 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_19190 -0.7 -2.9 cupin domain-containing protein compare
IAI47_14625 -0.7 -2.8 YbgC/FadM family acyl-CoA thioesterase compare
IAI47_19325 -0.7 -2.1 transposase compare
IAI47_19850 -0.7 -1.8 hypothetical protein compare
IAI47_07330 -0.6 -3.8 hypothetical protein compare
IAI47_19825 -0.6 -3.3 EAL domain-containing protein compare
IAI47_04710 -0.6 -1.5 hypothetical protein compare
IAI47_11540 -0.6 -1.4 type VI secretion system tip protein VgrG compare
IAI47_12270 -0.6 -2.5 YceK/YidQ family lipoprotein compare
IAI47_10165 -0.6 -2.1 PTS sugar transporter subunit IIA compare
IAI47_18410 -0.6 -2.0 diaminopimelate epimerase compare
IAI47_07520 -0.6 -3.8 MobA/MobL family protein compare
IAI47_18735 -0.6 -2.7 DeoR/GlpR transcriptional regulator compare
IAI47_02600 -0.6 -4.3 FtsH protease activity modulator HflK compare
IAI47_20705 -0.6 -0.6 sulfur carrier protein ThiS compare
IAI47_19490 -0.6 -2.4 DUF4102 domain-containing protein compare
IAI47_18420 -0.6 -4.0 class I adenylate cyclase compare
IAI47_17185 -0.6 -2.8 RNA polymerase factor sigma-54 compare
IAI47_14555 -0.6 -1.1 hemolysin expression modulator Hha compare
IAI47_20945 -0.6 -2.2 hypothetical protein compare
IAI47_02850 -0.6 -3.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_12925 -0.6 -1.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_05195 -0.6 -1.2 DnaA inactivator Hda compare
IAI47_18480 -0.6 -4.2 lipid III flippase WzxE compare
IAI47_00505 -0.6 -3.0 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_07700 -0.6 -1.7 EAL domain-containing protein compare
IAI47_17200 -0.6 -3.6 RNase adapter RapZ compare
IAI47_11890 -0.6 -3.0 DUF1493 family protein compare
IAI47_12300 -0.6 -1.5 hypothetical protein compare
IAI47_16810 -0.6 -4.3 hypothetical protein compare
IAI47_08305 -0.6 -2.8 chemotaxis protein CheW compare
IAI47_12865 -0.6 -3.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_09800 -0.6 -2.3 YnfA family protein compare
IAI47_16980 -0.6 -3.1 AraC family transcriptional regulator compare
IAI47_00430 -0.6 -4.6 DNA polymerase I compare
IAI47_06965 -0.6 -0.8 glycosyltransferase family 2 protein compare
IAI47_12765 -0.6 -3.6 aspartate/tyrosine/aromatic aminotransferase compare
IAI47_13355 -0.6 -4.1 DMT family transporter compare
IAI47_11470 -0.6 -1.6 IS1 family transposase compare
IAI47_00870 -0.6 -0.4 50S ribosomal protein L31 compare
IAI47_11950 -0.6 -2.7 NAD-dependent protein deacylase compare
IAI47_13710 -0.6 -1.3 cyd operon protein YbgE compare
IAI47_21600 -0.6 -0.9 EamA family transporter compare
IAI47_09630 -0.6 -2.4 type VI secretion system tube protein Hcp compare
IAI47_20185 -0.6 -3.2 urea carboxylase-associated family protein compare
IAI47_02040 -0.6 -2.9 peptidylprolyl isomerase compare
IAI47_04545 -0.6 -1.9 glutaredoxin-like protein NrdH compare
IAI47_18780 -0.6 -3.8 VENN motif pre-toxin domain-containing protein compare
IAI47_16080 -0.6 -3.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_17035 -0.6 -1.4 ribosome maturation factor RimP compare
IAI47_13925 -0.6 -1.0 tRNA-Met compare
IAI47_11505 -0.6 -2.1 hypothetical protein compare
IAI47_07380 -0.6 -1.8 ABC transporter ATP-binding protein compare
IAI47_03575 -0.6 -2.3 DUF2884 domain-containing protein compare
IAI47_02750 -0.6 -4.5 class 1 fructose-bisphosphatase compare
IAI47_12570 -0.6 -0.5 tRNA-Ser compare
IAI47_13025 -0.6 -3.4 YbjO family protein compare
IAI47_12930 -0.6 -1.8 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_09530 -0.6 -2.7 acid resistance repetitive basic protein Asr compare
IAI47_15540 -0.6 -3.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_06385 -0.6 -1.8 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_10575 -0.6 -1.5 hypothetical protein compare
IAI47_07025 -0.5 -1.7 glycosyltransferase family 4 protein compare
IAI47_05710 -0.5 -1.7 hypothetical protein compare
IAI47_04770 -0.5 -3.1 ATP-binding protein compare
IAI47_14195 -0.5 -3.1 D-alanyl-D-alanine dipeptidase compare
IAI47_04865 -0.5 -1.0 SoxR-reducing system protein RseC compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=6hrs; Outgrowth=LBkan50 across organisms