Experiment set7IT036 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most detrimental genes:

  gene name fitness t score description  
IAI47_06355 +6.2 29.5 transcriptional regulator LrhA compare
IAI47_21880 +3.9 5.4 ParA family protein compare
IAI47_05525 +2.8 2.9 tRNA-Ala compare
IAI47_12570 +2.8 4.6 tRNA-Ser compare
IAI47_09550 +2.7 10.3 hypothetical protein compare
IAI47_02350 +2.5 5.3 tRNA-Thr compare
IAI47_16390 +2.4 3.0 tRNA-Leu compare
IAI47_06385 +2.2 10.4 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_13765 +2.2 4.4 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_06395 +2.2 3.2 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_13745 +2.2 7.4 2-oxoglutarate dehydrogenase E1 component compare
IAI47_06400 +2.2 5.9 NADH-quinone oxidoreductase subunit J compare
IAI47_06405 +2.2 7.4 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_07885 +2.1 2.3 tRNA-Asn compare
IAI47_07550 +2.1 2.2 tRNA-Asn compare
IAI47_06365 +2.1 7.7 NADH-quinone oxidoreductase subunit B compare
IAI47_10825 +2.1 2.2 tRNA-Val compare
IAI47_09245 +2.1 10.7 YmiA family putative membrane protein compare
IAI47_19875 +2.1 9.6 TetR/AcrR family transcriptional regulator compare
IAI47_13740 +2.1 3.4 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_18595 +2.1 15.2 endoglucanase compare
IAI47_06410 +2.1 10.8 NADH-quinone oxidoreductase subunit L compare
IAI47_02345 +2.0 2.6 5S ribosomal RNA compare
IAI47_08655 +2.0 7.4 transcriptional regulator BetI compare
IAI47_20630 +2.0 10.0 DUF2534 family protein compare
IAI47_05130 +2.0 7.8 DNA-binding protein compare
IAI47_07250 +2.0 4.2 tRNA-Asn compare
IAI47_06415 +1.9 8.8 NADH-quinone oxidoreductase subunit M compare
IAI47_13935 +1.9 3.8 tRNA-Gln compare
IAI47_06370 +1.9 9.2 NADH-quinone oxidoreductase subunit C/D compare
IAI47_14680 +1.9 10.6 cytochrome o ubiquinol oxidase subunit II compare
IAI47_14690 +1.9 10.2 cytochrome o ubiquinol oxidase subunit III compare
IAI47_20715 +1.9 7.1 helix-turn-helix transcriptional regulator compare
IAI47_17900 +1.9 4.0 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_14700 +1.9 11.7 protoheme IX farnesyltransferase compare
IAI47_18240 +1.9 4.8 NAD(P)H-flavin reductase compare
IAI47_13755 +1.9 13.4 succinate dehydrogenase flavoprotein subunit compare
IAI47_13750 +1.9 8.4 succinate dehydrogenase iron-sulfur subunit compare
IAI47_06390 +1.8 6.3 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_17050 +1.8 6.3 preprotein translocase subunit SecG compare
IAI47_06790 +1.8 6.7 alkyl hydroperoxide reductase subunit C compare
IAI47_19710 +1.8 3.5 helix-turn-helix transcriptional regulator compare
IAI47_14685 +1.8 14.2 cytochrome o ubiquinol oxidase subunit I compare
IAI47_02400 +1.8 2.1 YhdT family protein compare
IAI47_15080 +1.8 5.9 cold-shock protein compare
IAI47_20850 +1.8 5.8 TetR/AcrR family transcriptional regulator compare
IAI47_14695 +1.7 9.0 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_09265 +1.6 5.8 LapA family protein compare
IAI47_15810 +1.6 4.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI47_06360 +1.6 3.1 NADH-quinone oxidoreductase subunit A compare
IAI47_09720 +1.5 8.3 TetR/AcrR family transcriptional regulator compare
IAI47_13185 +1.5 7.5 outer membrane protein OmpX compare
IAI47_05420 +1.5 1.3 PTS glucose transporter subunit IIA compare
IAI47_05490 +1.5 4.6 tRNA-Val compare
IAI47_20625 +1.5 3.4 DUF2946 domain-containing protein compare
IAI47_20505 +1.4 5.8 type II toxin-antitoxin system PrlF family antitoxin compare
IAI47_06420 +1.4 5.2 NADH-quinone oxidoreductase subunit NuoN compare
IAI47_13760 +1.4 4.3 succinate dehydrogenase membrane anchor subunit compare
IAI47_21635 +1.4 4.9 hypothetical protein compare
IAI47_13925 +1.4 3.3 tRNA-Met compare
IAI47_10680 +1.4 4.4 TetR/AcrR family transcriptional regulator compare
IAI47_16135 +1.3 3.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
IAI47_08430 +1.3 3.9 dihydroneopterin triphosphate diphosphatase compare
IAI47_21500 +1.3 5.9 H-NS histone family protein compare
IAI47_12300 +1.3 2.9 hypothetical protein compare
IAI47_15815 +1.3 4.1 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
IAI47_06380 +1.2 2.3 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_00770 +1.2 1.4 general stress protein compare
IAI47_12760 +1.2 6.8 porin OmpF compare
IAI47_03750 +1.2 5.9 Xaa-Pro aminopeptidase compare
IAI47_03290 +1.2 6.4 hypothetical protein compare
IAI47_21035 +1.2 2.8 TetR/AcrR family transcriptional regulator compare
IAI47_14705 +1.2 6.8 MFS transporter compare
IAI47_09240 +1.2 3.1 HTH-type transcriptional regulator CysB compare
IAI47_17565 +1.2 3.3 N-acetylglucosamine kinase compare
IAI47_13305 +1.2 4.2 helix-turn-helix transcriptional regulator compare
IAI47_05810 +1.1 2.0 hypothetical protein compare
IAI47_00925 +1.1 2.3 hypothetical protein compare
IAI47_03915 +1.1 3.7 RNA pyrophosphohydrolase compare
IAI47_12060 +1.1 4.1 beta-ketoacyl-ACP synthase II compare
IAI47_05780 +1.1 5.0 hypothetical protein compare
IAI47_19045 +1.1 2.8 two-component-system connector protein YcgZ compare
IAI47_17710 +1.1 7.6 glutamate/aspartate:proton symporter GltP compare
IAI47_05515 +1.1 5.6 formate/nitrite transporter family protein compare
IAI47_20755 +1.1 5.0 methionine synthase compare
IAI47_10795 +1.1 5.4 HTH-type transcriptional repressor PurR compare
IAI47_15975 +1.1 3.3 division/cell wall cluster transcriptional repressor MraZ compare
IAI47_00730 +1.0 4.2 glutaredoxin 3 compare
IAI47_09755 +1.0 5.2 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_05435 +1.0 3.2 hypothetical protein compare
IAI47_06780 +1.0 4.9 iron-sulfur cluster carrier protein ApbC compare
IAI47_20760 +1.0 5.1 DUF1852 domain-containing protein compare
IAI47_16255 +1.0 3.0 trp operon repressor compare
IAI47_00125 +1.0 3.8 sugar phosphate isomerase/epimerase compare
IAI47_09325 +1.0 6.4 FdhF/YdeP family oxidoreductase compare
IAI47_08005 +1.0 6.1 flagellar hook-length control protein FliK compare
IAI47_02775 +1.0 1.8 glycine dehydrogenase compare
IAI47_14015 +1.0 4.2 ribosome silencing factor compare
IAI47_05160 +1.0 5.9 ABC transporter permease subunit compare
IAI47_12790 +1.0 0.9 chromosome partition protein MukE compare
IAI47_02575 +1.0 4.0 N-acetylmuramoyl-L-alanine amidase AmiB compare
IAI47_08280 +1.0 5.9 flagellar transcriptional regulator FlhD compare
IAI47_08010 +1.0 5.7 flagella biosynthesis chaperone FliJ compare
IAI47_18715 +0.9 1.4 YibL family ribosome-associated protein compare
IAI47_05775 +0.9 3.7 type II toxin-antitoxin system MqsA family antitoxin compare
IAI47_16600 +0.9 1.2 tRNA-OTHER compare
IAI47_08340 +0.9 3.1 protein phosphatase CheZ compare
IAI47_08295 +0.9 6.7 flagellar motor protein MotB compare
IAI47_10990 +0.9 6.4 DUF481 domain-containing protein compare
IAI47_15690 +0.9 4.2 hypoxanthine phosphoribosyltransferase compare
IAI47_15600 +0.9 1.8 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_01120 +0.9 5.7 manganese efflux pump MntP compare
IAI47_08285 +0.9 5.0 flagellar transcriptional regulator FlhC compare
IAI47_17250 +0.9 6.8 cell division protein ZapE compare
IAI47_04450 +0.9 2.5 tRNA-Ala compare
IAI47_10785 +0.9 5.7 C40 family peptidase compare
IAI47_07810 +0.9 3.2 phosphonate ABC transporter, permease protein PhnE compare
IAI47_10500 +0.9 6.1 dipeptide/tripeptide permease DtpA compare
IAI47_06710 +0.9 2.2 LysR family transcriptional regulator compare
IAI47_08350 +0.9 5.6 flagellar biosynthesis protein FlhA compare
IAI47_17560 +0.9 1.5 ROK family transcriptional regulator compare
IAI47_12800 +0.9 3.1 tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM compare
IAI47_11920 +0.9 6.4 high frequency lysogenization protein HflD compare
IAI47_10330 +0.9 3.2 DNA replication terminus site-binding protein compare
IAI47_11220 +0.8 4.4 serine/threonine-protein phosphatase compare
IAI47_12145 +0.8 4.8 flagellar basal body rod protein FlgF compare
IAI47_21640 +0.8 3.3 sigma-70 family RNA polymerase sigma factor compare
IAI47_03765 +0.8 2.2 glycine cleavage system aminomethyltransferase GcvT compare
IAI47_01125 +0.8 2.2 stress response protein AzuC compare
IAI47_20550 +0.8 3.2 ABC transporter permease compare
IAI47_08950 +0.8 4.4 peptide-methionine (R)-S-oxide reductase MsrB compare
IAI47_12110 +0.8 2.0 ribonuclease E compare
IAI47_20245 +0.8 2.6 DUF1109 domain-containing protein compare
IAI47_12160 +0.8 5.2 flagellar basal body rod protein FlgC compare
IAI47_08145 +0.8 7.2 flagellin FliC compare
IAI47_17895 +0.8 3.5 diacylglycerol kinase compare
IAI47_01915 +0.8 2.7 phosphoglycolate phosphatase compare
IAI47_13435 +0.8 4.4 ATP-dependent RNA helicase RhlE compare
IAI47_12085 +0.8 4.2 phosphate acyltransferase PlsX compare
IAI47_03745 +0.8 4.0 YecA family protein compare
IAI47_07910 +0.8 5.5 DNA (cytosine-5-)-methyltransferase compare
IAI47_08465 +0.8 4.2 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_08025 +0.8 4.4 flagellar motor switch protein FliG compare
IAI47_04750 +0.8 1.5 hypothetical protein compare
IAI47_16945 +0.8 3.2 pyridoxamine 5'-phosphate oxidase family protein compare
IAI47_19675 +0.8 1.7 ParD-like family protein compare
IAI47_11175 +0.8 3.0 ABC transporter ATP-binding protein compare
IAI47_04745 +0.8 3.6 ash family protein compare
IAI47_00725 +0.8 1.9 rhodanese-like domain-containing protein compare
IAI47_07930 +0.8 1.0 DUF2158 domain-containing protein compare
IAI47_09860 +0.8 3.0 RES family NAD+ phosphorylase compare
IAI47_15980 +0.8 5.6 catabolite repressor/activator compare
IAI47_07540 +0.8 5.0 hypothetical protein compare
IAI47_05140 +0.8 1.7 DUF2633 family protein compare
IAI47_06170 +0.8 2.4 YfcL family protein compare
IAI47_00325 +0.7 5.5 ATPase RavA compare
IAI47_03500 +0.7 3.0 helix-turn-helix transcriptional regulator compare
IAI47_00945 +0.7 2.5 YijD family membrane protein compare
IAI47_16245 +0.7 3.4 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB compare
IAI47_18265 +0.7 0.7 Sec-independent protein translocase subunit TatB compare
IAI47_08000 +0.7 3.6 flagellar basal body-associated protein FliL compare
IAI47_08880 +0.7 4.6 fatty acid metabolism transcriptional regulator FadR compare
IAI47_17170 +0.7 2.3 LPS export ABC transporter periplasmic protein LptC compare
IAI47_05520 +0.7 1.0 tRNA-Ala compare
IAI47_18270 +0.7 2.3 twin-arginine translocase TatA/TatE family subunit compare
IAI47_19140 +0.7 3.3 helix-turn-helix transcriptional regulator compare
IAI47_14775 +0.7 1.8 transcriptional regulator NrdR compare
IAI47_09470 +0.7 2.6 hypothetical protein compare
IAI47_21740 +0.7 3.7 acetolactate decarboxylase compare
IAI47_00130 +0.7 3.5 LacI family DNA-binding transcriptional regulator compare
IAI47_12915 +0.7 3.0 leucine-responsive transcriptional regulator Lrp compare
IAI47_17145 +0.7 4.4 phospholipid ABC transporter ATP-binding protein MlaF compare
IAI47_05185 +0.7 2.7 uracil phosphoribosyltransferase compare
IAI47_08160 +0.7 4.3 RNA polymerase sigma factor FliA compare
IAI47_06965 +0.7 0.7 glycosyltransferase family 2 protein compare
IAI47_06650 +0.7 3.8 fused PTS fructose transporter subunit IIA/HPr protein compare
IAI47_16490 +0.7 2.2 PTS sugar transporter subunit IIA compare
IAI47_18315 +0.7 2.3 HTH-type transcriptional regulator MetR compare
IAI47_10390 +0.7 3.4 arabinose ABC transporter substrate-binding protein compare
IAI47_09390 +0.7 3.2 phage shock protein operon transcriptional activator compare
IAI47_08740 +0.7 2.2 DUF2627 domain-containing protein compare
IAI47_20380 +0.7 4.3 diaminobutyrate--2-oxoglutarate transaminase compare
IAI47_10760 +0.7 3.9 TetR/AcrR family transcriptional regulator compare
IAI47_12320 +0.7 2.1 hotdog family protein compare
IAI47_16220 +0.7 2.6 thr operon leader peptide compare
IAI47_19430 +0.7 1.8 GNAT family N-acetyltransferase compare
IAI47_18815 +0.7 3.0 4'-phosphopantetheinyl transferase superfamily protein compare
IAI47_19780 +0.7 2.3 TetR/AcrR family transcriptional regulator compare
IAI47_04925 +0.7 5.4 membrane-bound lytic murein transglycosylase MltF compare
IAI47_00320 +0.7 4.8 ATPase RavA stimulator ViaA compare
IAI47_03620 +0.7 4.2 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
IAI47_10470 +0.7 1.4 electron transport complex subunit E compare
IAI47_17585 +0.7 4.7 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
IAI47_09280 +0.7 2.0 stress response translation initiation inhibitor YciH compare
IAI47_14020 +0.7 2.7 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI47_12130 +0.7 4.9 flagellar basal body P-ring protein FlgI compare
IAI47_11210 +0.7 3.7 type VI secretion system-associated protein TagF compare
IAI47_04505 +0.7 3.3 transcriptional repressor MprA compare
IAI47_02450 +0.7 3.8 septum formation inhibitor Maf compare
IAI47_00120 +0.7 2.5 sugar kinase compare


Specific Phenotypes

For 1 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 5.0 mM Glucose; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms