Experiment set7IT020 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Chloride 500 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_2605 +1.2 6.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_1797 +1.1 2.8 Transcriptional regulator compare
Pf6N2E2_2984 +1.1 3.1 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_4057 +1.0 1.5 lipoprotein, putative compare
Pf6N2E2_6099 +1.0 1.6 tRNA-Glu-TTC compare
Pf6N2E2_3338 +1.0 1.6 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_2549 +1.0 1.6 hypothetical protein compare
Pf6N2E2_4889 +0.9 6.3 Putative transport protein compare
Pf6N2E2_4570 +0.9 1.1 Cation/multidrug efflux pump compare
Pf6N2E2_689 +0.9 2.1 FIG00956189: hypothetical protein compare
Pf6N2E2_204 +0.9 1.2 hypothetical protein compare
Pf6N2E2_1613 +0.9 2.4 short-chain dehydrogenase/reductase compare
Pf6N2E2_961 +0.9 2.3 FIG00954712: hypothetical protein compare
Pf6N2E2_1116 +0.9 1.3 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_3429 +0.9 2.9 hypothetical protein compare
Pf6N2E2_4204 +0.9 1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_55 +0.9 2.2 Probable hydrolase compare
Pf6N2E2_4969 +0.9 1.6 hypothetical protein compare
Pf6N2E2_3264 +0.8 1.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_6164 +0.8 1.3 tRNA-Val-TAC compare
Pf6N2E2_4459 +0.8 2.5 Transcriptional regulator, GntR family compare
Pf6N2E2_1371 +0.8 1.9 hypothetical protein compare
Pf6N2E2_4680 +0.8 2.2 HTH-type transcriptional regulator BetI compare
Pf6N2E2_3702 +0.8 2.1 FIG00953907: hypothetical protein compare
Pf6N2E2_2487 +0.8 1.2 FIG00956090: hypothetical protein compare
Pf6N2E2_2152 +0.8 1.8 hypothetical protein compare
Pf6N2E2_1099 +0.8 1.3 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_5816 +0.8 1.8 Smr domain protein compare
Pf6N2E2_924 +0.8 1.8 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_1626 +0.8 4.0 Putative ATP-binding component of a transport system compare
Pf6N2E2_2156 +0.7 1.8 Putative polyketide synthase (Fragment) compare
Pf6N2E2_3009 +0.7 2.8 Phage tail tube protein compare
Pf6N2E2_3328 +0.7 1.2 transcriptional regulator compare
Pf6N2E2_1434 +0.7 1.6 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_1759 +0.7 1.3 uncharacterized domain 1 compare
Pf6N2E2_98 +0.7 1.9 putative transmembrane protein compare
Pf6N2E2_1288 +0.7 0.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_1431 +0.7 1.8 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_3568 +0.7 2.5 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_3017 +0.7 2.3 hypothetical protein compare
Pf6N2E2_464 +0.7 1.8 Sensory histidine kinase QseC compare
Pf6N2E2_1912 +0.7 2.2 hypothetical protein compare
Pf6N2E2_1740 +0.7 2.3 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_4751 +0.7 2.1 response regulator compare
Pf6N2E2_168 +0.7 2.8 hypothetical protein compare
Pf6N2E2_2594 +0.7 3.7 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_1224 +0.7 3.0 Two-component hybrid sensor and regulator compare
Pf6N2E2_2256 +0.7 2.9 hypothetical protein compare
Pf6N2E2_5279 +0.7 2.4 Hypothetical flavoprotein YqcA (clustered with tRNA pseudouridine synthase C) compare
Pf6N2E2_533 +0.7 2.1 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_3088 +0.7 1.5 hypothetical protein compare
Pf6N2E2_3475 +0.6 1.8 hypothetical protein compare
Pf6N2E2_474 +0.6 3.2 Transcriptional regulator, ArsR family compare
Pf6N2E2_5340 +0.6 2.7 Stringent starvation protein A compare
Pf6N2E2_241 +0.6 0.9 hypothetical protein compare
Pf6N2E2_5237 +0.6 1.2 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_114 +0.6 1.6 Polysaccharide biosynthesis protein compare
Pf6N2E2_4678 +0.6 0.8 hypothetical protein compare
Pf6N2E2_1295 +0.6 3.3 Sensor histidine kinase compare
Pf6N2E2_6038 +0.6 1.3 hypothetical protein compare
Pf6N2E2_2588 +0.6 1.5 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_2900 +0.6 2.6 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_403 +0.6 2.8 Cyanate hydratase (EC 4.2.1.104) compare
Pf6N2E2_1147 +0.6 1.5 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_4527 +0.6 1.5 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_1040 +0.6 1.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2158 +0.6 2.3 Signal transduction histidine kinase compare
Pf6N2E2_479 +0.6 1.9 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_1699 +0.6 1.5 FIG00955832: hypothetical protein compare
Pf6N2E2_2116 +0.6 2.2 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_3969 +0.6 0.5 Membrane-fusion protein compare
Pf6N2E2_2633 +0.6 0.9 Nitroreductase family protein compare
Pf6N2E2_642 +0.6 1.3 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system compare
Pf6N2E2_1596 +0.6 1.2 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_4415 +0.6 1.4 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_5024 +0.6 1.3 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_451 +0.6 1.0 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_4110 +0.6 1.9 FIG01201438: hypothetical protein compare
Pf6N2E2_663 +0.6 2.2 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_1185 +0.6 2.2 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_521 +0.6 1.6 hypothetical protein compare
Pf6N2E2_5920 +0.6 2.0 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly compare
Pf6N2E2_5061 +0.6 2.7 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) compare
Pf6N2E2_2324 +0.6 1.4 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_3989 +0.6 3.0 FIG00958473: hypothetical protein compare
Pf6N2E2_4543 +0.6 1.5 hypothetical protein compare
Pf6N2E2_4773 +0.6 0.9 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1993 +0.6 3.2 putative exported protein compare
Pf6N2E2_2869 +0.6 0.9 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_420 +0.6 0.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_6058 +0.6 2.8 FIG139976: hypothetical protein compare
Pf6N2E2_503 +0.6 2.0 sensor histidine kinase compare
Pf6N2E2_1009 +0.6 1.0 Inositol transport system permease protein compare
Pf6N2E2_2055 +0.6 2.1 StbE replicon stabilization toxin compare
Pf6N2E2_238 +0.6 1.0 hypothetical protein compare
Pf6N2E2_1246 +0.6 1.1 FIG00961372: hypothetical protein compare
Pf6N2E2_1984 +0.6 2.3 probable exported protein STY4558 compare
Pf6N2E2_1135 +0.5 2.6 COGs COG3558 compare
Pf6N2E2_328 +0.5 2.0 hypothetical protein compare
Pf6N2E2_122 +0.5 1.1 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_2 +0.5 2.3 FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis compare
Pf6N2E2_4489 +0.5 2.2 Putative activity regulator of membrane protease YbbK compare
Pf6N2E2_5814 +0.5 3.5 Glutaredoxin compare
Pf6N2E2_4025 +0.5 1.3 hypothetical protein compare
Pf6N2E2_3624 +0.5 2.8 Flagellar motor rotation protein MotB compare
Pf6N2E2_5990 +0.5 1.2 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_4510 +0.5 3.5 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) compare
Pf6N2E2_1656 +0.5 1.0 hypothetical protein compare
Pf6N2E2_1997 +0.5 2.0 FIG00956406: hypothetical protein compare
Pf6N2E2_3713 +0.5 1.9 Acyl carrier protein compare
Pf6N2E2_3516 +0.5 1.4 Probable transmembrane protein compare
Pf6N2E2_3979 +0.5 3.7 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_2981 +0.5 1.7 FIG00956655: hypothetical protein compare
Pf6N2E2_1779 +0.5 1.3 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_766 +0.5 1.9 Fap protein with C39 domain compare
Pf6N2E2_4059 +0.5 0.8 DNA-binding protein HU-alpha compare
Pf6N2E2_170 +0.5 0.8 lipoprotein, putative compare
Pf6N2E2_2286 +0.5 1.1 FIG00953287: hypothetical protein compare
Pf6N2E2_2213 +0.5 2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2561 +0.5 0.9 FIG00955434: hypothetical protein compare
Pf6N2E2_664 +0.5 1.3 Acetoin catabolism protein X compare
Pf6N2E2_2674 +0.5 0.6 FIG00953856: hypothetical protein compare
Pf6N2E2_5207 +0.5 0.4 hypothetical protein compare
Pf6N2E2_574 +0.5 1.9 Transporter, LysE family compare
Pf6N2E2_692 +0.5 1.7 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_922 +0.5 1.9 FIG00794167: hypothetical protein compare
Pf6N2E2_942 +0.5 0.6 Mll6465 protein compare
Pf6N2E2_5676 +0.5 1.3 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5679 +0.5 1.7 hypothetical protein compare
Pf6N2E2_953 +0.5 1.2 FIG00958851: hypothetical protein compare
Pf6N2E2_2138 +0.5 1.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_1821 +0.5 0.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1152 +0.5 1.9 hypothetical protein compare
Pf6N2E2_371 +0.5 2.0 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_4422 +0.5 1.2 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_1212 +0.5 1.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_1339 +0.5 1.0 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_1519 +0.5 2.5 Metallo-beta-lactamase family protein, RNA-specific compare
Pf6N2E2_4928 +0.5 0.7 Permeases of the major facilitator superfamily compare
Pf6N2E2_3432 +0.5 1.5 Ais protein, putative compare
Pf6N2E2_314 +0.5 1.9 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_1683 +0.5 1.3 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_136 +0.5 1.2 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_2499 +0.5 1.2 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_1633 +0.5 2.1 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_1815 +0.5 1.2 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_473 +0.5 1.8 putative cytochrome p450 oxidoreductase compare
Pf6N2E2_3237 +0.5 1.5 hypothetical protein compare
Pf6N2E2_2606 +0.5 2.3 hypothetical protein compare
Pf6N2E2_2656 +0.5 1.6 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_443 +0.5 1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_478 +0.5 1.4 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_3283 +0.5 2.7 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_2806 +0.5 1.3 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_1893 +0.5 1.3 hypothetical protein compare
Pf6N2E2_1301 +0.5 2.2 TRAP-type C4-dicarboxylate transport system, periplasmic component compare
Pf6N2E2_338 +0.5 0.7 Transcriptional regulator, AraC family compare
Pf6N2E2_4534 +0.5 1.3 hypothetical protein compare
Pf6N2E2_3835 +0.5 1.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_4424 +0.5 1.7 Regulator of nucleoside diphosphate kinase compare
Pf6N2E2_1627 +0.5 3.1 Non-ribosomal peptide synthase compare
Pf6N2E2_2795 +0.5 0.7 putative exported protein compare
Pf6N2E2_2323 +0.5 1.1 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_3897 +0.5 2.1 hypothetical protein compare
Pf6N2E2_3258 +0.5 2.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_4682 +0.5 2.1 ABC transporter for Carnitine, permease component (from data) compare
Pf6N2E2_4694 +0.5 2.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_1335 +0.5 1.2 Phospholipid-binding protein compare
Pf6N2E2_180 +0.5 1.8 Transcriptional regulator, MerR family compare
Pf6N2E2_504 +0.5 0.9 DNA-binding response regulator compare
Pf6N2E2_5339 +0.4 2.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4335 +0.4 2.4 Uncharacterized protein ImpB compare
Pf6N2E2_5748 +0.4 1.4 Transcriptional activator protein LuxR compare
Pf6N2E2_2496 +0.4 1.0 FIG00956575: hypothetical protein compare
Pf6N2E2_4541 +0.4 0.8 hypothetical protein compare
Pf6N2E2_3200 +0.4 2.5 Putative membrane protein compare
Pf6N2E2_4764 +0.4 1.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_723 +0.4 1.2 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_1236 +0.4 1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_2247 +0.4 1.2 Transcriptional regulator, AraC family compare
Pf6N2E2_799 +0.4 0.7 hypothetical protein compare
Pf6N2E2_6094 +0.4 2.1 Glucoamylase (EC 3.2.1.3) compare
Pf6N2E2_2181 +0.4 1.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2503 +0.4 0.5 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5629 +0.4 2.1 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2405 +0.4 2.2 Hypothetical protein PvdY @ Siderophore synthetase small component, acetyltransferase compare
Pf6N2E2_2012 +0.4 1.1 hypothetical protein compare
Pf6N2E2_2369 +0.4 1.3 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_990 +0.4 1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2419 +0.4 2.2 Transcription regulator [contains diacylglycerol kinase catalytic domain] compare
Pf6N2E2_3978 +0.4 3.2 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_4298 +0.4 1.2 Uncharacterized protein ImpB compare
Pf6N2E2_5166 +0.4 1.9 ABC-type hemin transport system, ATPase component compare
Pf6N2E2_1021 +0.4 2.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_672 +0.4 0.9 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_1220 +0.4 1.5 hypothetical protein compare
Pf6N2E2_630 +0.4 1.3 Epimerase KguE compare
Pf6N2E2_260 +0.4 1.7 Regulator of cell morphogenesis and NO signaling compare
Pf6N2E2_947 +0.4 1.7 Multidrug efflux membrane fusion protein MexE compare
Pf6N2E2_119 +0.4 1.9 Glycosyltransferase compare


Specific Phenotypes

For 5 genes in this experiment

For stress Sodium Chloride in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Chloride across organisms