Experiment set7IT006 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most detrimental genes:

  gene name fitness t score description  
IAI47_06355 +7.9 39.1 transcriptional regulator LrhA compare
IAI47_19035 +3.3 2.1 transcriptional regulator compare
IAI47_09245 +3.1 5.7 YmiA family putative membrane protein compare
IAI47_19710 +3.0 12.0 helix-turn-helix transcriptional regulator compare
IAI47_02350 +3.0 5.8 tRNA-Thr compare
IAI47_20715 +3.0 13.7 helix-turn-helix transcriptional regulator compare
IAI47_07250 +3.0 9.5 tRNA-Asn compare
IAI47_02345 +2.9 4.5 5S ribosomal RNA compare
IAI47_08655 +2.9 12.7 transcriptional regulator BetI compare
IAI47_06790 +2.8 12.2 alkyl hydroperoxide reductase subunit C compare
IAI47_10825 +2.6 3.5 tRNA-Val compare
IAI47_21035 +2.6 8.8 TetR/AcrR family transcriptional regulator compare
IAI47_05525 +2.6 4.8 tRNA-Ala compare
IAI47_09550 +2.5 11.4 hypothetical protein compare
IAI47_19045 +2.5 4.6 two-component-system connector protein YcgZ compare
IAI47_05420 +2.5 3.0 PTS glucose transporter subunit IIA compare
IAI47_20630 +2.4 12.4 DUF2534 family protein compare
IAI47_13925 +2.4 3.6 tRNA-Met compare
IAI47_16390 +2.4 2.5 tRNA-Leu compare
IAI47_19875 +2.4 11.8 TetR/AcrR family transcriptional regulator compare
IAI47_06360 +2.4 3.8 NADH-quinone oxidoreductase subunit A compare
IAI47_07885 +2.4 2.6 tRNA-Asn compare
IAI47_10845 +2.3 3.9 major outer membrane lipoprotein compare
IAI47_10470 +2.3 2.3 electron transport complex subunit E compare
IAI47_20505 +2.3 10.2 type II toxin-antitoxin system PrlF family antitoxin compare
IAI47_08740 +2.3 5.0 DUF2627 domain-containing protein compare
IAI47_09720 +2.2 11.0 TetR/AcrR family transcriptional regulator compare
IAI47_09860 +2.2 5.6 RES family NAD+ phosphorylase compare
IAI47_14020 +2.2 3.7 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
IAI47_07550 +2.1 2.2 tRNA-Asn compare
IAI47_15080 +2.0 5.2 cold-shock protein compare
IAI47_05490 +2.0 4.6 tRNA-Val compare
IAI47_19780 +2.0 7.8 TetR/AcrR family transcriptional regulator compare
IAI47_09395 +2.0 6.0 phage shock protein PspA compare
IAI47_08745 +2.0 3.3 transcription antiterminator/RNA stability regulator CspE compare
IAI47_08430 +2.0 3.3 dihydroneopterin triphosphate diphosphatase compare
IAI47_13185 +1.9 9.5 outer membrane protein OmpX compare
IAI47_06380 +1.9 3.4 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_14695 +1.9 5.7 cytochrome o ubiquinol oxidase subunit IV compare
IAI47_12570 +1.9 2.2 tRNA-Ser compare
IAI47_20760 +1.8 8.1 DUF1852 domain-containing protein compare
IAI47_14690 +1.8 8.5 cytochrome o ubiquinol oxidase subunit III compare
IAI47_09325 +1.8 11.2 FdhF/YdeP family oxidoreductase compare
IAI47_12760 +1.8 9.8 porin OmpF compare
IAI47_11735 +1.8 3.1 histidinol-phosphatase compare
IAI47_05465 +1.8 5.2 bile acid:sodium symporter compare
IAI47_10330 +1.7 5.7 DNA replication terminus site-binding protein compare
IAI47_21335 +1.7 3.8 RepB family plasmid replication initiator protein compare
IAI47_09265 +1.7 6.8 LapA family protein compare
IAI47_20850 +1.7 5.9 TetR/AcrR family transcriptional regulator compare
IAI47_05775 +1.7 5.9 type II toxin-antitoxin system MqsA family antitoxin compare
IAI47_19140 +1.7 8.0 helix-turn-helix transcriptional regulator compare
IAI47_09240 +1.7 4.5 HTH-type transcriptional regulator CysB compare
IAI47_14685 +1.7 11.8 cytochrome o ubiquinol oxidase subunit I compare
IAI47_06940 +1.7 1.3 tyrosine-protein kinase Wzc compare
IAI47_13740 +1.7 2.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_05000 +1.6 5.1 Fe-S cluster assembly transcriptional regulator IscR compare
IAI47_04450 +1.6 4.5 tRNA-Ala compare
IAI47_13305 +1.6 5.9 helix-turn-helix transcriptional regulator compare
IAI47_12085 +1.6 9.8 phosphate acyltransferase PlsX compare
IAI47_15600 +1.6 3.8 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
IAI47_10925 +1.6 4.6 EAL domain-containing protein compare
IAI47_06385 +1.6 5.0 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_04710 +1.6 1.8 hypothetical protein compare
IAI47_18715 +1.6 2.0 YibL family ribosome-associated protein compare
IAI47_05130 +1.6 5.7 DNA-binding protein compare
IAI47_21500 +1.6 5.9 H-NS histone family protein compare
IAI47_10680 +1.5 5.2 TetR/AcrR family transcriptional regulator compare
IAI47_11195 +1.5 5.1 SH3 domain-containing protein compare
IAI47_14680 +1.5 7.2 cytochrome o ubiquinol oxidase subunit II compare
IAI47_15815 +1.5 6.3 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
IAI47_17565 +1.5 3.1 N-acetylglucosamine kinase compare
IAI47_13310 +1.5 6.0 MerR family transcriptional regulator compare
IAI47_20110 +1.5 7.2 Glu/Leu/Phe/Val dehydrogenase compare
IAI47_10320 +1.5 1.5 Rrf2 family transcriptional regulator compare
IAI47_09970 +1.5 6.3 DeoR/GlpR transcriptional regulator compare
IAI47_06405 +1.4 2.8 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_12110 +1.4 2.2 ribonuclease E compare
IAI47_06365 +1.4 3.7 NADH-quinone oxidoreductase subunit B compare
IAI47_06170 +1.4 1.9 YfcL family protein compare
IAI47_07540 +1.4 8.2 hypothetical protein compare
IAI47_14705 +1.4 6.9 MFS transporter compare
IAI47_20500 +1.4 4.8 type II toxin-antitoxin system YhaV family toxin compare
IAI47_08000 +1.4 6.6 flagellar basal body-associated protein FliL compare
IAI47_14700 +1.4 7.6 protoheme IX farnesyltransferase compare
IAI47_20755 +1.4 6.5 methionine synthase compare
IAI47_09440 +1.4 6.4 transcriptional regulator TyrR compare
IAI47_06370 +1.4 5.2 NADH-quinone oxidoreductase subunit C/D compare
IAI47_05065 +1.4 4.1 YfgM family protein compare
IAI47_01940 +1.4 2.6 DUF2559 family protein compare
IAI47_10145 +1.3 3.0 winged helix-turn-helix transcriptional regulator compare
IAI47_06780 +1.3 5.7 iron-sulfur cluster carrier protein ApbC compare
IAI47_08280 +1.3 6.5 flagellar transcriptional regulator FlhD compare
IAI47_09470 +1.3 4.8 hypothetical protein compare
IAI47_05295 +1.3 2.6 YpfN family protein compare
IAI47_08460 +1.3 5.0 zinc ABC transporter ATP-binding protein ZnuC compare
IAI47_04235 +1.3 7.8 RNA polymerase sigma factor RpoS compare
IAI47_07810 +1.3 3.2 phosphonate ABC transporter, permease protein PhnE compare
IAI47_17050 +1.3 5.5 preprotein translocase subunit SecG compare
IAI47_18595 +1.3 9.6 endoglucanase compare
IAI47_10720 +1.3 5.2 transcriptional regulator SlyA compare
IAI47_06680 +1.3 2.9 LysR family transcriptional regulator compare
IAI47_21635 +1.3 5.4 hypothetical protein compare
IAI47_12555 +1.3 3.6 hypothetical protein compare
IAI47_03920 +1.3 8.7 phosphoenolpyruvate--protein phosphotransferase compare
IAI47_03750 +1.3 7.0 Xaa-Pro aminopeptidase compare
IAI47_17000 +1.3 7.9 lipoprotein NlpI compare
IAI47_05770 +1.2 3.0 hypothetical protein compare
IAI47_05515 +1.2 6.7 formate/nitrite transporter family protein compare
IAI47_20625 +1.2 3.1 DUF2946 domain-containing protein compare
IAI47_14015 +1.2 4.9 ribosome silencing factor compare
IAI47_13755 +1.2 6.0 succinate dehydrogenase flavoprotein subunit compare
IAI47_17385 +1.2 1.7 CDP-alcohol phosphatidyltransferase family protein compare
IAI47_03860 +1.2 5.4 diaminopimelate decarboxylase compare
IAI47_06455 +1.2 3.8 ribonucleoside-diphosphate reductase subunit alpha compare
IAI47_01900 +1.2 3.1 SPOR domain-containing protein compare
IAI47_20405 +1.2 6.4 malate dehydrogenase (quinone) compare
IAI47_15595 +1.2 1.8 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_08435 +1.2 2.1 YebC/PmpR family DNA-binding transcriptional regulator compare
IAI47_13935 +1.2 1.6 tRNA-Gln compare
IAI47_09125 +1.2 4.4 YciI family protein compare
IAI47_08455 +1.2 4.3 zinc ABC transporter permease subunit ZnuB compare
IAI47_12915 +1.2 4.4 leucine-responsive transcriptional regulator Lrp compare
IAI47_19040 +1.1 4.4 hypothetical protein compare
IAI47_09390 +1.1 5.3 phage shock protein operon transcriptional activator compare
IAI47_14495 +1.1 2.1 hypothetical protein compare
IAI47_14660 +1.1 3.5 trigger factor compare
IAI47_05595 +1.1 5.8 IclR family transcriptional regulator compare
IAI47_08465 +1.1 5.4 zinc ABC transporter substrate-binding protein ZnuA compare
IAI47_08145 +1.1 9.2 flagellin FliC compare
IAI47_05185 +1.1 3.9 uracil phosphoribosyltransferase compare
IAI47_08700 +1.1 4.5 RNA chaperone ProQ compare
IAI47_15975 +1.1 3.6 division/cell wall cluster transcriptional repressor MraZ compare
IAI47_13750 +1.1 2.7 succinate dehydrogenase iron-sulfur subunit compare
IAI47_11300 +1.1 3.6 stress-induced protein YchH compare
IAI47_12165 +1.1 6.8 flagellar basal body rod protein FlgB compare
IAI47_08695 +1.1 3.8 GAF domain-containing protein compare
IAI47_15995 +1.1 1.5 leu operon leader peptide compare
IAI47_20380 +1.1 5.4 diaminobutyrate--2-oxoglutarate transaminase compare
IAI47_18970 +1.1 5.4 hypothetical protein compare
IAI47_09675 +1.1 2.9 YoaK family small membrane protein compare
IAI47_05780 +1.1 4.4 hypothetical protein compare
IAI47_09015 +1.0 5.5 YchJ family protein compare
IAI47_14185 +1.0 3.7 DUF1349 domain-containing protein compare
IAI47_08880 +1.0 5.0 fatty acid metabolism transcriptional regulator FadR compare
IAI47_05580 +1.0 1.5 membrane protein YpdK compare
IAI47_09405 +1.0 3.0 envelope stress response membrane protein PspC compare
IAI47_00730 +1.0 2.0 glutaredoxin 3 compare
IAI47_02385 +1.0 7.9 tRNA dihydrouridine synthase DusB compare
IAI47_08710 +1.0 4.0 protease HtpX compare
IAI47_06710 +1.0 2.1 LysR family transcriptional regulator compare
IAI47_20385 +1.0 2.7 aspartate aminotransferase family protein compare
IAI47_08015 +1.0 6.0 flagellum-specific ATP synthase FliI compare
IAI47_19575 +1.0 3.1 hypothetical protein compare
IAI47_09345 +1.0 3.3 LysR family transcriptional regulator compare
IAI47_07755 +1.0 3.5 phosphonate C-P lyase system protein PhnG compare
IAI47_08010 +1.0 5.4 flagella biosynthesis chaperone FliJ compare
IAI47_10990 +1.0 6.6 DUF481 domain-containing protein compare
IAI47_17190 +1.0 4.7 ribosome hibernation promoting factor compare
IAI47_15645 +1.0 4.6 polynucleotide adenylyltransferase PcnB compare
IAI47_20245 +1.0 2.3 DUF1109 domain-containing protein compare
IAI47_05435 +1.0 3.2 hypothetical protein compare
IAI47_02840 +1.0 2.7 YraN family protein compare
IAI47_09790 +1.0 1.6 DUF1161 domain-containing protein compare
IAI47_10605 +1.0 3.6 hypothetical protein compare
IAI47_18985 +1.0 3.3 MarR family transcriptional regulator compare
IAI47_13770 +1.0 5.6 citrate synthase compare
IAI47_10760 +1.0 3.9 TetR/AcrR family transcriptional regulator compare
IAI47_03490 +1.0 1.8 hypothetical protein compare
IAI47_10500 +0.9 5.4 dipeptide/tripeptide permease DtpA compare
IAI47_06415 +0.9 3.6 NADH-quinone oxidoreductase subunit M compare
IAI47_08005 +0.9 5.7 flagellar hook-length control protein FliK compare
IAI47_08285 +0.9 4.3 flagellar transcriptional regulator FlhC compare
IAI47_21125 +0.9 2.5 metalloregulator ArsR/SmtB family transcription factor compare
IAI47_05150 +0.9 5.3 exopolyphosphatase compare
IAI47_09755 +0.9 4.3 ATP-dependent dethiobiotin synthetase BioD compare
IAI47_12175 +0.9 1.3 anti-sigma-28 factor FlgM compare
IAI47_04505 +0.9 2.5 transcriptional repressor MprA compare
IAI47_21310 +0.9 6.1 helix-turn-helix domain-containing protein compare
IAI47_18920 +0.9 4.8 TetR/AcrR family transcriptional regulator compare
IAI47_14985 +0.9 2.6 hypothetical protein compare
IAI47_16375 +0.9 6.0 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC compare
IAI47_04030 +0.9 2.9 DUF423 domain-containing protein compare
IAI47_07130 +0.9 4.9 APC family permease compare
IAI47_10795 +0.9 4.2 HTH-type transcriptional repressor PurR compare
IAI47_06625 +0.9 3.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
IAI47_14930 +0.9 2.1 shikimate kinase AroL compare
IAI47_15630 +0.9 3.2 DNA/RNA nuclease SfsA compare
IAI47_01915 +0.9 3.1 phosphoglycolate phosphatase compare
IAI47_14470 +0.9 1.1 YbaB/EbfC family nucleoid-associated protein compare
IAI47_00935 +0.9 3.0 Si-specific NAD(P)(+) transhydrogenase compare
IAI47_19030 +0.9 2.5 hypothetical protein compare
IAI47_09020 +0.9 6.3 patatin-like phospholipase RssA compare
IAI47_07460 +0.9 2.9 hypothetical protein compare
IAI47_06400 +0.9 1.6 NADH-quinone oxidoreductase subunit J compare
IAI47_12170 +0.9 4.9 flagellar basal body P-ring formation protein FlgA compare
IAI47_16490 +0.9 2.5 PTS sugar transporter subunit IIA compare
IAI47_19240 +0.9 4.5 SDR family oxidoreductase compare
IAI47_05510 +0.9 5.4 putative DNA-binding transcriptional regulator compare
IAI47_16650 +0.9 2.9 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms