Experiment set7H38 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with 2-Furfuraldehyde 0.032 vol%

200 most important genes:

  gene name fitness t score description  
Psest_0152 -5.2 -3.6 Imidazoleglycerol-phosphate dehydratase compare
Psest_1115 -5.0 -2.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0954 -4.8 -4.7 Fe-S oxidoreductase compare
Psest_0279 -4.7 -4.6 methionine biosynthesis protein MetW compare
Psest_2864 -4.7 -3.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_4085 -4.4 -9.8 Biotin carboxylase compare
Psest_2590 -4.3 -1.3 3-isopropylmalate dehydratase, small subunit compare
Psest_0325 -4.3 -15.8 Putative threonine efflux protein compare
Psest_0155 -4.2 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0508 -4.1 -4.9 gamma-glutamyl phosphate reductase compare
Psest_0153 -4.1 -9.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3647 -4.0 -2.8 Indole-3-glycerol phosphate synthase compare
Psest_4084 -4.0 -8.9 oxaloacetate decarboxylase alpha subunit compare
Psest_1037 -4.0 -2.6 acetolactate synthase, small subunit compare
Psest_1527 -4.0 -7.1 Na+/proline symporter compare
Psest_0953 -4.0 -7.6 iron-sulfur cluster-binding protein compare
Psest_2578 -3.9 -6.4 O-succinylhomoserine sulfhydrylase compare
Psest_3384 -3.8 -5.8 glutamate 5-kinase compare
Psest_0267 -3.8 -9.1 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_0306 -3.8 -8.4 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0414 -3.7 -2.6 biotin biosynthesis protein BioC compare
Psest_3864 -3.7 -8.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0062 -3.7 -6.2 tryptophan synthase, alpha subunit compare
Psest_3297 -3.7 -7.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4086 -3.7 -7.9 Transcriptional regulator compare
Psest_3866 -3.7 -10.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2329 -3.7 -11.1 Transcriptional regulator compare
Psest_3818 -3.7 -3.6 endoribonuclease L-PSP, putative compare
Psest_2333 -3.7 -1.1 Protein of unknown function (DUF3359). compare
Psest_3377 -3.7 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3299 -3.6 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0280 -3.6 -9.9 homoserine O-acetyltransferase compare
Psest_3226 -3.6 -1.1 Predicted membrane protein compare
Psest_4042 -3.6 -2.7 hypothetical protein compare
Psest_0477 -3.6 -6.9 thiamine biosynthesis protein ThiC compare
Psest_3650 -3.6 -4.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3862 -3.6 -10.8 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0412 -3.5 -6.4 8-amino-7-oxononanoate synthase compare
Psest_3298 -3.5 -6.3 histidinol dehydrogenase compare
Psest_2326 -3.4 -11.0 aminodeoxychorismate synthase, component I, bacterial clade compare
Psest_0266 -3.4 -4.7 thiamine biosynthesis protein ThiS compare
Psest_2584 -3.4 -3.3 Phosphoribosylanthranilate isomerase compare
Psest_3843 -3.4 -4.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0411 -3.4 -6.1 biotin synthetase compare
Psest_1167 -3.4 -1.0 hypothetical protein compare
Psest_3944 -3.4 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1491 -3.3 -2.2 Cold shock proteins compare
Psest_3732 -3.3 -5.9 polyphosphate kinase 1 compare
Psest_3721 -3.3 -5.0 Malic enzyme compare
Psest_0951 -3.3 -6.2 FAD/FMN-containing dehydrogenases compare
Psest_1772 -3.2 -3.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3322 -3.2 -13.2 TIGR02099 family protein compare
Psest_0537 -3.2 -1.9 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0326 -3.1 -10.7 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0413 -3.1 -4.8 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2589 -3.1 -6.7 3-isopropylmalate dehydrogenase compare
Psest_3648 -3.1 -4.3 anthranilate phosphoribosyltransferase compare
Psest_1132 -3.1 -4.7 mutator mutT protein compare
Psest_0415 -3.1 -3.0 dethiobiotin synthase compare
Psest_0031 -3.1 -1.3 Uncharacterized conserved protein compare
Psest_1473 -3.0 -6.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1691 -3.0 -3.1 aminodeoxychorismate lyase compare
Psest_2591 -3.0 -2.9 3-isopropylmalate dehydratase, large subunit compare
Psest_0718 -3.0 -2.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_0133 -3.0 -1.2 type VI secretion protein, VC_A0107 family compare
Psest_1452 -3.0 -4.1 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1509 -3.0 -7.4 quinolinate synthetase complex, A subunit compare
Psest_0013 -3.0 -2.1 Lauroyl/myristoyl acyltransferase compare
Psest_3317 -3.0 -5.1 Phosphotransferase System HPr (HPr) Family compare
Psest_0536 -2.9 -2.9 thiamine-phosphate pyrophosphorylase compare
Psest_0296 -2.9 -5.6 glutathione synthetase, prokaryotic compare
Psest_3649 -2.9 -5.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1292 -2.8 -3.4 monothiol glutaredoxin, Grx4 family compare
Psest_1686 -2.8 -3.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3301 -2.8 -2.5 Predicted transcriptional regulator, BolA superfamily compare
Psest_1640 -2.8 -9.9 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3145 -2.8 -1.6 hypothetical protein compare
Psest_1082 -2.7 -1.8 Enoyl-CoA hydratase/carnithine racemase compare
Psest_1642 -2.7 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_2945 -2.7 -1.8 septum site-determining protein MinC compare
Psest_2579 -2.7 -3.2 amidophosphoribosyltransferase compare
Psest_3045 -2.6 -2.1 Cold shock proteins compare
Psest_3101 -2.6 -14.7 L-aspartate oxidase compare
Psest_2988 -2.6 -5.2 aspartate kinase, monofunctional class compare
Psest_3998 -2.6 -2.5 glutamate--cysteine ligase compare
Psest_0063 -2.6 -4.3 tryptophan synthase, beta subunit compare
Psest_0575 -2.6 -0.7 HrpA-like helicases compare
Psest_0277 -2.6 -1.8 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_3988 -2.5 -6.7 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_1535 -2.5 -3.4 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
Psest_3178 -2.5 -2.9 formyltetrahydrofolate deformylase compare
Psest_4345 -2.5 -7.9 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2324 -2.5 -10.5 hypothetical protein compare
Psest_0489 -2.5 -2.4 phosphoserine phosphatase SerB compare
Psest_4280 -2.5 -4.1 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_2646 -2.5 -1.6 SOS regulatory protein LexA compare
Psest_2756 -2.5 -1.0 hypothetical protein compare
Psest_2850 -2.4 -1.0 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1695 -2.4 -3.3 Tfp pilus assembly protein PilZ compare
Psest_0182 -2.4 -5.3 glycine cleavage system H protein compare
Psest_0346 -2.4 -2.7 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_1870 -2.4 -1.4 Transcriptional regulators compare
Psest_3092 -2.4 -1.6 ribonuclease III, bacterial compare
Psest_4284 -2.4 -11.2 Spermidine/putrescine-binding periplasmic protein compare
Psest_4282 -2.4 -8.6 spermidine/putrescine ABC transporter ATP-binding subunit compare
Psest_4124 -2.4 -2.4 hypothetical protein compare
Psest_2863 -2.4 -4.4 Transcriptional regulator compare
Psest_3927 -2.3 -3.7 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2325 -2.3 -6.8 alpha-L-glutamate ligase-related protein compare
Psest_4281 -2.3 -11.4 ABC-type spermidine/putrescine transport system, permease component I compare
Psest_2327 -2.3 -5.9 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_0771 -2.3 -8.8 Acyl-CoA hydrolase compare
Psest_2225 -2.3 -2.6 Diacylglycerol kinase compare
Psest_3718 -2.3 -5.7 Tfp pilus assembly protein PilN compare
Psest_1679 -2.2 -1.7 ribonuclease, Rne/Rng family compare
Psest_3123 -2.2 -2.1 dihydroorotase, homodimeric type compare
Psest_2946 -2.2 -2.1 septum site-determining protein MinD compare
Psest_0952 -2.2 -2.5 Uncharacterized conserved protein compare
Psest_0687 -2.2 -5.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2650 -2.2 -3.5 hypothetical protein compare
Psest_3338 -2.1 -1.2 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1582 -2.1 -2.3 Protein of unknown function (DUF3087). compare
Psest_3565 -2.1 -1.0 hypothetical protein compare
Psest_0673 -2.1 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3351 -2.1 -3.2 peptide chain release factor 3 compare
Psest_1163 -2.1 -3.1 diguanylate cyclase (GGDEF) domain compare
Psest_2323 -2.1 -8.2 Uncharacterized protein conserved in archaea compare
Psest_0484 -2.1 -2.9 hypothetical protein compare
Psest_0349 -2.1 -6.0 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_0678 -2.0 -3.3 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_3645 -2.0 -7.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1699 -2.0 -2.4 Selenocysteine lyase compare
Psest_0243 -2.0 -0.8 hypothetical protein compare
Psest_1326 -2.0 -2.7 Uncharacterized conserved protein compare
Psest_0722 -2.0 -5.0 Predicted ATPase compare
Psest_1724 -2.0 -3.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1888 -2.0 -0.8 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2645 -2.0 -6.2 Transcriptional regulator compare
Psest_0393 -2.0 -3.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_2458 -2.0 -2.1 MoxR-like ATPases compare
Psest_0193 -2.0 -0.8 conserved hypothetical protein compare
Psest_3159 -2.0 -5.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1195 -2.0 -2.9 xanthine permease compare
Psest_0442 -2.0 -1.9 ATPases of the AAA+ class compare
Psest_1242 -2.0 -1.9 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3810 -2.0 -1.3 orotate phosphoribosyltransferase compare
Psest_4177 -1.9 -1.8 flagellar biosynthetic protein FliP compare
Psest_2243 -1.9 -1.1 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1361 -1.9 -4.5 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_2018 -1.9 -2.3 Uncharacterized conserved protein compare
Psest_1295 -1.9 -3.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0385 -1.9 -1.3 Conserved secreted protein compare
Psest_4364 -1.9 -2.9 16S rRNA (guanine(527)-N(7))-methyltransferase GidB compare
Psest_0359 -1.9 -1.6 Transcriptional regulators compare
Psest_1602 -1.9 -1.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0170 -1.9 -5.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_2104 -1.9 -2.2 IscR-regulated protein YhgI compare
Psest_3955 -1.9 -4.1 Uncharacterized protein conserved in bacteria compare
Psest_4298 -1.9 -0.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_0449 -1.9 -9.2 Glutamine synthetase adenylyltransferase compare
Psest_3762 -1.8 -3.9 iron donor protein CyaY compare
Psest_3710 -1.8 -8.0 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3777 -1.8 -2.1 diguanylate cyclase (GGDEF) domain compare
Psest_2648 -1.8 -1.8 hypothetical protein compare
Psest_0313 -1.8 -1.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0708 -1.8 -1.0 outer membrane assembly lipoprotein YfiO compare
Psest_4151 -1.8 -1.7 Flagellar hook capping protein compare
Psest_3357 -1.8 -2.5 Predicted pyrophosphatase compare
Psest_0120 -1.8 -3.2 hypothetical protein compare
Psest_3943 -1.8 -1.2 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1103 -1.8 -2.2 GTP-binding protein YchF compare
Psest_1804 -1.8 -1.7 Superfamily II DNA and RNA helicases compare
Psest_1947 -1.8 -1.2 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0218 -1.7 -2.3 Acyl-CoA hydrolase compare
Psest_2967 -1.7 -2.1 flagellar basal-body rod protein FlgC compare
Psest_1660 -1.7 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0355 -1.7 -1.5 Glycine cleavage system regulatory protein compare
Psest_0529 -1.7 -6.6 Putative Mg2+ and Co2+ transporter CorC compare
Psest_2138 -1.7 -3.9 RND family efflux transporter, MFP subunit compare
Psest_4134 -1.7 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1920 -1.7 -0.9 Uncharacterized protein conserved in bacteria compare
Psest_2953 -1.7 -1.7 Histone acetyltransferase compare
Psest_2090 -1.7 -2.1 Protein of unknown function (DUF2970). compare
Psest_2088 -1.7 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_0086 -1.7 -1.6 hypothetical protein compare
Psest_0257 -1.7 -2.1 Predicted Zn-dependent peptidases compare
Psest_0320 -1.7 -4.4 ABC-type multidrug transport system, ATPase component compare
Psest_2391 -1.7 -4.2 PAS domain S-box compare
Psest_1815 -1.7 -9.2 pseudaminic acid synthase compare
Psest_0050 -1.7 -4.4 Predicted acetyltransferase compare
Psest_0558 -1.6 -0.7 urease, beta subunit compare
Psest_0691 -1.6 -9.1 ribonuclease R compare
Psest_1975 -1.6 -5.3 Predicted transcriptional regulators compare
Psest_2520 -1.6 -1.3 Predicted SAM-dependent methyltransferase compare
Psest_2719 -1.6 -2.2 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_4083 -1.6 -10.8 Predicted permease compare
Psest_2768 -1.6 -1.7 Kef-type K+ transport systems, predicted NAD-binding component compare
Psest_1183 -1.6 -2.0 hydroxyisourate hydrolase compare
Psest_3926 -1.6 -7.5 GTP-binding protein TypA/BipA compare
Psest_2344 -1.6 -2.4 Methyl-accepting chemotaxis protein compare


Specific Phenotypes

For 31 genes in this experiment

For stress 2-Furfuraldehyde in Pseudomonas stutzeri RCH2

For stress 2-Furfuraldehyde across organisms