Experiment set6S33 for Pseudomonas sp. RS175

Compare to:

sn-glycero-3-phosphocholine carbon source

200 most important genes:

  gene name fitness t score description  
PFR28_02824 -6.2 -4.3 3-isopropylmalate dehydratase large subunit compare
PFR28_04933 -6.1 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_00186 -5.9 -4.1 ATP phosphoribosyltransferase compare
PFR28_04134 -5.3 -11.9 Sarcosine oxidase subunit beta compare
PFR28_05016 -5.3 -16.3 Glutamate synthase [NADPH] small chain compare
PFR28_04929 -5.2 -5.1 Histidine biosynthesis bifunctional protein HisB compare
PFR28_05125 -5.2 -8.6 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_05015 -5.1 -26.7 Glutamate synthase [NADPH] large chain compare
PFR28_02821 -5.0 -19.5 3-isopropylmalate dehydrogenase compare
PFR28_03697 -5.0 -10.2 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_04834 -5.0 -18.3 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04146 -4.8 -11.7 hypothetical protein compare
PFR28_04145 -4.8 -7.0 Protein FixB compare
PFR28_05244 -4.8 -16.5 Copper-exporting P-type ATPase compare
PFR28_04930 -4.8 -10.2 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_03363 -4.5 -16.6 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_01809 -4.5 -1.3 hypothetical protein compare
PFR28_04147 -4.4 -10.9 putative N-methylproline demethylase compare
PFR28_04071 -4.4 -1.3 Multifunctional CCA protein compare
PFR28_02823 -4.4 -2.1 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_02603 -4.4 -6.0 Siroheme synthase compare
PFR28_04132 -4.3 -23.0 Sarcosine oxidase subunit alpha compare
PFR28_04245 -4.3 -15.1 Homoserine O-succinyltransferase compare
PFR28_00305 -4.2 -10.1 2-isopropylmalate synthase compare
PFR28_03304 -4.1 -1.2 hypothetical protein compare
PFR28_04131 -4.1 -4.7 Sarcosine oxidase subunit gamma compare
PFR28_04133 -4.1 -7.5 Sarcosine oxidase subunit delta compare
PFR28_04168 -4.1 -15.4 Oxygen-dependent choline dehydrogenase conserved
PFR28_03714 -4.1 -15.0 RNA polymerase-binding transcription factor DksA compare
PFR28_04165 -4.0 -9.4 Vitamin B12 import ATP-binding protein BtuD compare
PFR28_00187 -3.9 -10.4 Histidinol dehydrogenase compare
PFR28_04986 -3.9 -6.4 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_02810 -3.9 -13.0 O-succinylhomoserine sulfhydrylase compare
PFR28_04278 -3.9 -10.5 Dihydroxy-acid dehydratase compare
PFR28_01366 -3.8 -11.1 Sulfite reductase [ferredoxin] compare
PFR28_04161 -3.8 -8.8 HTH-type transcriptional regulator CdhR compare
PFR28_04832 -3.8 -12.5 putative phosphatase compare
PFR28_04148 -3.7 -7.3 hypothetical protein compare
PFR28_04246 -3.5 -10.1 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_04135 -3.5 -9.0 Serine hydroxymethyltransferase compare
PFR28_00098 -3.5 -7.6 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_04167 -3.4 -9.1 NAD/NADP-dependent betaine aldehyde dehydrogenase conserved
PFR28_00695 -3.4 -1.9 Sulfur carrier protein TusA compare
PFR28_04985 -3.4 -4.2 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_04932 -3.4 -4.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_00966 -3.3 -13.6 HTH-type transcriptional regulator CysB compare
PFR28_04139 -3.2 -8.1 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component compare
PFR28_04992 -3.1 -1.2 hypothetical protein compare
PFR28_00188 -3.0 -9.1 Histidinol-phosphate aminotransferase compare
PFR28_00193 -3.0 -8.6 Sulfate adenylyltransferase subunit 2 compare
PFR28_01365 -2.9 -5.0 hypothetical protein compare
PFR28_04144 -2.9 -4.3 hypothetical protein compare
PFR28_04030 -2.9 -11.4 hypothetical protein compare
PFR28_04149 -2.9 -6.5 hypothetical protein compare
PFR28_03698 -2.9 -8.1 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04633 -2.8 -3.3 Alginate biosynthesis sensor protein KinB compare
PFR28_02811 -2.8 -6.1 Amidophosphoribosyltransferase compare
PFR28_05212 -2.8 -11.7 Sensor histidine kinase RcsC compare
PFR28_03533 -2.7 -1.5 DNA-binding protein HU 1 compare
PFR28_01930 -2.7 -1.8 HTH-type transcriptional regulator McbR compare
PFR28_01362 -2.7 -1.8 hypothetical protein compare
PFR28_04489 -2.6 -9.5 Phosphate-binding protein PstS compare
PFR28_04163 -2.6 -9.7 hypothetical protein compare
PFR28_03388 -2.6 -10.0 Quinolinate synthase A compare
PFR28_03202 -2.6 -2.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_00851 -2.6 -1.7 Flagellum site-determining protein YlxH compare
PFR28_05201 -2.5 -4.2 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_03856 -2.5 -2.9 LPS-assembly lipoprotein LptE compare
PFR28_03865 -2.5 -7.3 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_04140 -2.4 -8.0 Carnitine monooxygenase oxygenase subunit compare
PFR28_04486 -2.4 -9.0 Phosphate import ATP-binding protein PstB compare
PFR28_04164 -2.3 -5.6 Glycine betaine transport system permease protein OpuAB compare
PFR28_01231 -2.3 -1.6 Peptidyl-prolyl cis-trans isomerase D compare
PFR28_04902 -2.3 -6.4 Inner membrane protein YgaZ compare
PFR28_04488 -2.2 -12.8 hypothetical protein compare
PFR28_04232 -2.1 -5.4 Glutathione synthetase compare
PFR28_04487 -2.1 -6.2 hypothetical protein compare
PFR28_03296 -2.1 -1.4 hypothetical protein compare
PFR28_00159 -2.1 -8.8 hypothetical protein compare
PFR28_01094 -2.0 -5.7 hypothetical protein compare
PFR28_04202 -2.0 -4.1 5,10-methylenetetrahydrofolate reductase compare
PFR28_00194 -2.0 -7.3 Bifunctional enzyme CysN/CysC compare
PFR28_01376 -2.0 -1.6 hypothetical protein compare
PFR28_00403 -1.9 -4.0 Regulator of sigma-E protease RseP compare
PFR28_04072 -1.9 -3.6 Bifunctional folate synthesis protein compare
PFR28_01190 -1.9 -1.1 hypothetical protein compare
PFR28_03699 -1.9 -1.3 Acetolactate synthase isozyme 3 large subunit compare
PFR28_03775 -1.9 -3.4 hypothetical protein compare
PFR28_01118 -1.9 -1.8 hypothetical protein compare
PFR28_02704 -1.8 -1.0 hypothetical protein compare
PFR28_04425 -1.8 -6.6 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_05205 -1.8 -2.5 Precorrin-8X methylmutase compare
PFR28_01265 -1.8 -5.0 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_04517 -1.7 -7.8 Oxaloacetate decarboxylase alpha chain compare
PFR28_02734 -1.7 -4.1 Ribose operon repressor compare
PFR28_04103 -1.6 -7.2 Biotin synthase compare
PFR28_00480 -1.6 -4.3 HTH-type transcriptional activator CmpR compare
PFR28_00472 -1.6 -2.4 Protein RecA compare
PFR28_04308 -1.6 -1.1 Amino-acid acetyltransferase compare
PFR28_04842 -1.6 -4.7 D-3-phosphoglycerate dehydrogenase compare
PFR28_03206 -1.6 -6.3 Cobalamin biosynthesis protein CobD compare
PFR28_02430 -1.6 -3.4 Hydrogen cyanide synthase subunit HcnA compare
PFR28_04518 -1.6 -5.8 2-oxoglutarate carboxylase small subunit compare
PFR28_02608 -1.5 -1.5 DNA translocase FtsK compare
PFR28_00689 -1.5 -10.0 L-aspartate oxidase compare
PFR28_04628 -1.5 -1.4 Thiol:disulfide interchange protein DsbA compare
PFR28_05207 -1.4 -4.7 Siroheme synthase compare
PFR28_04436 -1.4 -5.3 hypothetical protein compare
PFR28_05139 -1.4 -1.7 hypothetical protein compare
PFR28_00241 -1.4 -3.0 Disulfide bond formation protein B compare
PFR28_05184 -1.4 -1.9 Lipopolysaccharide export system ATP-binding protein LptB compare
PFR28_04675 -1.4 -0.7 hypothetical protein compare
PFR28_00535 -1.4 -1.5 hypothetical protein compare
PFR28_00037 -1.4 -2.1 putative RNA polymerase sigma factor FecI compare
PFR28_02957 -1.4 -1.2 Fatty acid oxidation complex subunit alpha compare
PFR28_03223 -1.4 -6.6 GTP pyrophosphokinase compare
PFR28_03429 -1.3 -3.3 Thiamine-phosphate synthase compare
PFR28_03217 -1.3 -0.9 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_05206 -1.3 -5.6 Precorrin-2 C(20)-methyltransferase compare
PFR28_02613 -1.3 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_04585 -1.3 -4.3 Chromosome partitioning protein ParA compare
PFR28_03427 -1.3 -5.2 Sensor histidine kinase RcsC compare
PFR28_01450 -1.3 -1.3 hypothetical protein compare
PFR28_03653 -1.3 -1.5 Molybdopterin-synthase adenylyltransferase compare
PFR28_01378 -1.3 -2.4 Magnesium-chelatase 38 kDa subunit compare
PFR28_03748 -1.3 -3.4 Ribosomal large subunit pseudouridine synthase D compare
PFR28_00139 -1.3 -4.9 HTH-type transcriptional regulator LutR compare
PFR28_00498 -1.3 -1.0 Cold shock protein CapB compare
PFR28_03412 -1.2 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_04333 -1.2 -6.8 Glycerol-3-phosphate transporter conserved
PFR28_00473 -1.2 -1.0 Regulatory protein RecX compare
PFR28_03513 -1.2 -2.9 hypothetical protein compare
PFR28_04100 -1.2 -4.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_01369 -1.2 -5.3 Methionine synthase compare
PFR28_02314 -1.2 -2.2 Fumarate and nitrate reduction regulatory protein compare
PFR28_01874 -1.2 -2.7 hypothetical protein compare
PFR28_04833 -1.2 -2.4 hypothetical protein compare
PFR28_04865 -1.2 -0.8 Glutamate--cysteine ligase compare
PFR28_00799 -1.1 -2.3 Putative NAD(P)H nitroreductase YdjA compare
PFR28_03200 -1.1 -2.9 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_03179 -1.1 -1.1 tRNA-Val compare
PFR28_01278 -1.1 -3.1 HTH-type transcriptional regulator CdhR compare
PFR28_05104 -1.1 -1.7 hypothetical protein compare
PFR28_04461 -1.1 -1.2 hypothetical protein compare
PFR28_02210 -1.1 -1.0 cAMP-activated global transcriptional regulator CRP compare
PFR28_00184 -1.1 -1.9 hypothetical protein compare
PFR28_01372 -1.1 -1.7 Precorrin-4 C(11)-methyltransferase compare
PFR28_04454 -1.1 -4.4 hypothetical protein compare
PFR28_05179 -1.1 -2.0 Acetyltransferase compare
PFR28_04325 -1.1 -2.7 5-formyltetrahydrofolate cyclo-ligase compare
PFR28_01113 -1.1 -2.5 DNA topoisomerase 1 compare
PFR28_04519 -1.1 -4.4 HTH-type transcriptional activator CmpR compare
PFR28_02846 -1.1 -2.9 Adaptive-response sensory-kinase SasA compare
PFR28_01960 -1.1 -1.5 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
PFR28_01706 -1.1 -1.9 hypothetical protein compare
PFR28_02891 -1.1 -1.8 HTH-type transcriptional regulator CdhR compare
PFR28_04565 -1.1 -5.3 Protein RarD compare
PFR28_05123 -1.0 -3.1 Modulator of FtsH protease HflK compare
PFR28_04922 -1.0 -1.1 hypothetical protein compare
PFR28_03209 -1.0 -1.8 Corrinoid adenosyltransferase compare
PFR28_00010 -1.0 -5.4 Diguanylate cyclase DgcN compare
PFR28_03208 -1.0 -4.1 Cobyrinate a,c-diamide synthase compare
PFR28_00728 -1.0 -3.8 5-oxoprolinase subunit A 3 compare
PFR28_00709 -1.0 -0.8 hypothetical protein compare
PFR28_02111 -1.0 -2.6 hypothetical protein compare
PFR28_02838 -1.0 -4.9 Aromatic-amino-acid aminotransferase compare
PFR28_03303 -1.0 -4.2 Glycerophosphodiester phosphodiesterase conserved
PFR28_02241 -1.0 -1.4 Copper-binding lipoprotein NosL compare
PFR28_02841 -1.0 -0.9 hypothetical protein compare
PFR28_04267 -1.0 -1.2 hypothetical protein compare
PFR28_02280 -1.0 -1.7 hypothetical protein compare
PFR28_00725 -1.0 -2.0 Putative glutamine amidotransferase YafJ compare
PFR28_01114 -1.0 -3.0 hypothetical protein compare
PFR28_01004 -1.0 -3.5 Molybdenum cofactor guanylyltransferase compare
PFR28_04052 -1.0 -6.6 hypothetical protein compare
PFR28_00325 -1.0 -1.4 Inner membrane protein YpjD compare
PFR28_01006 -1.0 -3.0 Molybdopterin molybdenumtransferase compare
PFR28_02719 -1.0 -1.3 Integration host factor subunit alpha compare
PFR28_04903 -1.0 -2.8 hypothetical protein compare
PFR28_03130 -1.0 -1.4 Streptothricin hydrolase compare
PFR28_01043 -1.0 -2.2 hypothetical protein compare
PFR28_01836 -1.0 -1.0 Transcriptional regulator SlyA compare
PFR28_00478 -1.0 -2.6 Transcriptional regulatory protein DegU compare
PFR28_05046 -1.0 -0.7 hypothetical protein compare
PFR28_05165 -1.0 -1.9 hypothetical protein compare
PFR28_00873 -1.0 -3.6 hypothetical protein compare
PFR28_00448 -1.0 -1.5 hypothetical protein compare
PFR28_01395 -1.0 -2.0 D-beta-hydroxybutyrate dehydrogenase compare
PFR28_03636 -1.0 -2.3 hypothetical protein compare
PFR28_03635 -1.0 -2.8 Malate:quinone oxidoreductase compare
PFR28_00336 -0.9 -1.3 hypothetical protein compare
PFR28_03625 -0.9 -5.5 Metalloprotease LoiP compare
PFR28_04476 -0.9 -3.6 Chorismate pyruvate-lyase compare
PFR28_03624 -0.9 -2.2 Putative manganese exporter compare
PFR28_03749 -0.9 -0.9 Outer membrane protein assembly factor BamD compare
PFR28_02772 -0.9 -2.8 hypothetical protein compare
PFR28_01060 -0.9 -2.7 HTH-type transcriptional repressor NanR compare
PFR28_05200 -0.9 -1.4 Cobalt-precorrin-5B C(1)-methyltransferase compare
PFR28_01594 -0.9 -1.1 hypothetical protein compare
PFR28_00485 -0.9 -2.5 Peptidyl-lysine N-acetyltransferase YjaB compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source sn-glycero-3-phosphocholine in Pseudomonas sp. RS175

For carbon source sn-glycero-3-phosphocholine across organisms