Experiment set6IT075 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium thiosulfate pentahydrate 0.25 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5069 -4.6 -5.4 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5006 -4.5 -7.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3782 -4.4 -3.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5841 -4.1 -1.9 GlcG protein compare
Pf6N2E2_4585 -4.0 -11.3 Cell division protein FtsX compare
Pf6N2E2_3253 -4.0 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_4045 -4.0 -4.7 FIG00953248: hypothetical protein compare
Pf6N2E2_5956 -3.9 -5.9 FIG004453: protein YceG like compare
Pf6N2E2_3834 -3.8 -6.7 Lipoprotein NlpD compare
Pf6N2E2_3842 -3.8 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3617 -3.7 -5.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4477 -3.7 -4.8 Z-ring-associated protein ZapA compare
Pf6N2E2_5544 -3.5 -8.1 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3833 -3.4 -5.7 hypothetical protein compare
Pf6N2E2_5245 -3.3 -7.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4584 -3.2 -3.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5068 -3.2 -11.5 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2825 -3.1 -2.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2201 -3.1 -4.2 Transmembrane regulator protein PrtR compare
Pf6N2E2_3610 -3.1 -5.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3783 -3.0 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2274 -3.0 -4.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5430 -2.9 -8.2 Transglycosylase, Slt family compare
Pf6N2E2_2510 -2.9 -4.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5342 -2.9 -3.4 21 kDa hemolysin precursor compare
Pf6N2E2_2574 -2.9 -2.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_3658 -2.9 -6.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5178 -2.9 -2.8 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4204 -2.9 -2.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_504 -2.9 -3.2 DNA-binding response regulator compare
Pf6N2E2_156 -2.8 -2.4 Carbon storage regulator compare
Pf6N2E2_2938 -2.8 -4.6 Outer membrane lipoprotein compare
Pf6N2E2_3252 -2.8 -7.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3839 -2.8 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2755 -2.8 -1.8 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2278 -2.8 -13.0 Transcription-repair coupling factor compare
Pf6N2E2_3841 -2.7 -4.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5771 -2.6 -6.8 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_3941 -2.6 -3.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4305 -2.6 -1.6 FIG00959590: hypothetical protein compare
Pf6N2E2_2218 -2.6 -3.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5001 -2.5 -1.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4187 -2.5 -3.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4071 -2.5 -3.6 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2919 -2.5 -2.8 FIG00955830: hypothetical protein compare
Pf6N2E2_2754 -2.4 -4.0 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_987 -2.4 -2.8 hypothetical protein compare
Pf6N2E2_2344 -2.3 -8.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5739 -2.3 -1.4 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3763 -2.3 -2.7 hypothetical protein compare
Pf6N2E2_2823 -2.3 -4.0 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4369 -2.3 -2.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3282 -2.2 -1.5 FIG005080: Possible exported protein compare
Pf6N2E2_5236 -2.2 -2.0 hypothetical protein compare
Pf6N2E2_3243 -2.2 -11.4 FIG067310: hypothetical protein compare
Pf6N2E2_3179 -2.2 -2.9 FIG021952: putative membrane protein compare
Pf6N2E2_4372 -2.2 -4.9 FIG00460773: hypothetical protein compare
Pf6N2E2_2318 -2.2 -6.6 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_1056 -2.1 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_4678 -2.1 -1.4 hypothetical protein compare
Pf6N2E2_5156 -2.1 -2.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2586 -2.1 -2.0 Hpt domain protein compare
Pf6N2E2_4046 -2.1 -12.7 FIG00953482: hypothetical protein compare
Pf6N2E2_2152 -2.1 -1.6 hypothetical protein compare
Pf6N2E2_3251 -2.1 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3940 -2.0 -7.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4206 -2.0 -1.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3303 -2.0 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5014 -2.0 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2519 -2.0 -1.5 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_2488 -2.0 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2824 -1.9 -7.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_4153 -1.9 -1.3 Sensory box histidine kinase compare
Pf6N2E2_2080 -1.9 -1.5 hypothetical protein compare
Pf6N2E2_5237 -1.9 -2.0 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_4579 -1.9 -2.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2384 -1.9 -3.3 CmpX compare
Pf6N2E2_5172 -1.9 -2.9 FOG: TPR repeat compare
Pf6N2E2_3753 -1.9 -9.3 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_4205 -1.9 -3.5 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_1223 -1.8 -2.3 Amino acid transporters compare
Pf6N2E2_4448 -1.8 -3.6 probable P23 protein compare
Pf6N2E2_6140 -1.8 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2527 -1.8 -3.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3661 -1.8 -3.5 hypothetical protein compare
Pf6N2E2_1089 -1.8 -1.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3521 -1.8 -6.6 Sensor histidine kinase/response regulator compare
Pf6N2E2_4159 -1.7 -2.8 Cytochrome c4 compare
Pf6N2E2_2753 -1.7 -2.0 HtrA protease/chaperone protein compare
Pf6N2E2_5406 -1.7 -2.3 FIG00958224: hypothetical protein compare
Pf6N2E2_40 -1.7 -3.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_39 -1.7 -3.5 FIG00857858: hypothetical protein compare
Pf6N2E2_1128 -1.7 -1.4 Two-component response regulator compare
Pf6N2E2_623 -1.7 -1.3 FIG00954674: hypothetical protein compare
Pf6N2E2_5328 -1.7 -3.0 FIG00958649: hypothetical protein compare
Pf6N2E2_5520 -1.7 -4.8 Sensory box histidine kinase compare
Pf6N2E2_5150 -1.7 -3.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1182 -1.7 -2.4 Transcriptional regulator, LysR family compare
Pf6N2E2_2310 -1.7 -6.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3301 -1.6 -9.1 ABC transporter, ATP-binding protein compare
Pf6N2E2_5128 -1.6 -3.6 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_5338 -1.6 -6.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5337 -1.6 -3.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2752 -1.6 -5.8 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_4391 -1.6 -3.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_2487 -1.6 -1.0 FIG00956090: hypothetical protein compare
Pf6N2E2_5703 -1.6 -3.8 outer membrane protein H1 compare
Pf6N2E2_1434 -1.6 -1.7 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_70 -1.6 -3.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2472 -1.6 -3.0 hypothetical protein compare
Pf6N2E2_3328 -1.6 -2.1 transcriptional regulator compare
Pf6N2E2_5425 -1.6 -1.2 hypothetical protein compare
Pf6N2E2_1656 -1.6 -1.4 hypothetical protein compare
Pf6N2E2_3305 -1.5 -2.5 hypothetical protein compare
Pf6N2E2_624 -1.5 -4.0 hypothetical protein PA3071 compare
Pf6N2E2_620 -1.5 -5.1 BatD compare
Pf6N2E2_3260 -1.5 -3.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2033 -1.5 -4.0 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_6063 -1.5 -5.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4416 -1.5 -2.0 Tyrosine recombinase XerC compare
Pf6N2E2_2513 -1.5 -3.1 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2992 -1.4 -3.7 Regulatory protein RecX compare
Pf6N2E2_4044 -1.4 -2.9 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_596 -1.4 -3.6 Arsenic efflux pump protein compare
Pf6N2E2_5605 -1.4 -2.6 FxsA protein compare
Pf6N2E2_2282 -1.4 -2.6 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_3791 -1.4 -6.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3847 -1.4 -2.7 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5993 -1.4 -1.5 FIG00957412: hypothetical protein compare
Pf6N2E2_5704 -1.4 -4.2 Transcriptional regulatory protein PhoP compare
Pf6N2E2_405 -1.4 -1.2 hypothetical protein compare
Pf6N2E2_2264 -1.4 -2.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5252 -1.3 -1.8 FIG00956396: hypothetical protein compare
Pf6N2E2_2970 -1.3 -2.6 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_5705 -1.3 -1.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_331 -1.3 -2.6 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_4647 -1.3 -6.7 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_855 -1.3 -2.4 Transcriptional regulator, IclR family compare
Pf6N2E2_3875 -1.3 -1.1 FIG00953324: hypothetical protein compare
Pf6N2E2_144 -1.3 -8.8 Uncharacterized protein YtfM precursor compare
Pf6N2E2_1450 -1.3 -1.5 FIG00960438: hypothetical protein compare
Pf6N2E2_5964 -1.3 -3.3 FIG003620: Proteophosphoglycan precursor (Fragment) compare
Pf6N2E2_2371 -1.3 -1.2 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_3550 -1.3 -1.6 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_5759 -1.3 -4.9 DNA recombination protein RmuC compare
Pf6N2E2_5339 -1.3 -4.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2506 -1.3 -6.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2311 -1.3 -4.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4607 -1.3 -2.3 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_5444 -1.3 -2.4 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_445 -1.2 -3.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_145 -1.2 -6.1 putative exported protein compare
Pf6N2E2_3770 -1.2 -1.6 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_5476 -1.2 -1.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_660 -1.2 -2.2 hypothetical protein compare
Pf6N2E2_4467 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_2509 -1.2 -1.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5671 -1.2 -1.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_384 -1.2 -1.7 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4661 -1.2 -2.5 KluA regulatory protein compare
Pf6N2E2_3258 -1.2 -2.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_165 -1.2 -2.2 Ribokinase (EC 2.7.1.15) compare
Pf6N2E2_2526 -1.2 -3.6 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_5103 -1.2 -1.2 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_2756 -1.2 -4.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4624 -1.2 -0.7 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5820 -1.2 -1.6 FIG00957914: hypothetical protein compare
Pf6N2E2_664 -1.2 -1.3 Acetoin catabolism protein X compare
Pf6N2E2_625 -1.2 -2.9 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_1211 -1.2 -1.2 Lactoylglutathione lyase compare
Pf6N2E2_2933 -1.2 -2.2 hypothetical protein compare
Pf6N2E2_464 -1.2 -1.4 Sensory histidine kinase QseC compare
Pf6N2E2_2200 -1.2 -1.2 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_3292 -1.2 -2.9 K+-dependent Na+/Ca+ exchanger related-protein compare
Pf6N2E2_3132 -1.2 -1.9 FIG00954548: hypothetical protein compare
Pf6N2E2_2313 -1.2 -1.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2500 -1.2 -2.6 Putative membrane protein compare
Pf6N2E2_2317 -1.2 -1.9 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5862 -1.2 -1.4 Lipoprotein, putative compare
Pf6N2E2_3257 -1.2 -2.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1476 -1.1 -2.1 (AF179595) Vco33 compare
Pf6N2E2_218 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_4033 -1.1 -5.7 GTP-binding protein compare
Pf6N2E2_3876 -1.1 -2.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5840 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_5160 -1.1 -1.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5171 -1.1 -7.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_3835 -1.1 -2.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_75 -1.1 -1.7 Colicin V production protein compare
Pf6N2E2_1987 -1.1 -0.9 hypothetical protein compare
Pf6N2E2_302 -1.1 -2.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5346 -1.1 -1.6 rRNA small subunit methyltransferase I compare
Pf6N2E2_1821 -1.1 -0.8 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3285 -1.1 -2.1 Rod shape-determining protein MreD compare
Pf6N2E2_4447 -1.0 -6.8 Cytochrome c family protein compare
Pf6N2E2_4454 -1.0 -3.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1625 -1.0 -1.8 Ferric reductase (1.6.99.14) compare
Pf6N2E2_52 -1.0 -6.1 Excinuclease ABC subunit B compare
Pf6N2E2_2325 -1.0 -2.6 Recombination protein RecR compare
Pf6N2E2_3009 -1.0 -2.2 Phage tail tube protein compare


Specific Phenotypes

For 9 genes in this experiment

For stress Sodium thiosulfate pentahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium thiosulfate pentahydrate across organisms