Experiment set6IT065 for Pseudomonas putida KT2440

Compare to:

D-Glucuronic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.4 -3.7 Glutamate 5-kinase compare
PP_0293 -5.2 -4.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4723 -4.9 -12.5 Carbamoyl-phosphate synthase large chain compare
PP_2371 -4.8 -6.5 Sulphite reductase hemoprotein, beta subunit compare
PP_4909 -4.8 -8.6 phosphoserine phosphatase compare
PP_0290 -4.5 -10.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4724 -4.4 -8.0 Carbamoyl-phosphate synthase small chain compare
PP_2370 -4.2 -4.8 conserved protein of unknown function compare
PP_5014 -4.1 -4.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_0289 -4.1 -10.7 Imidazoleglycerol-phosphate dehydratase compare
PP_1088 -3.9 -10.6 Argininosuccinate synthase compare
PP_3999 -3.9 -6.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1986 -3.8 -5.1 3-isopropylmalate dehydratase small subunit compare
PP_5185 -3.8 -7.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0967 -3.7 -12.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0339 -3.7 -5.0 Pyruvate dehydrogenase E1 component compare
PP_0292 -3.5 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3599 -3.5 -10.0 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) conserved
PP_1985 -3.5 -7.3 3-isopropylmalate dehydratase large subunit compare
PP_0184 -3.4 -6.6 Argininosuccinate lyase compare
PP_4999 -3.4 -2.3 dihydroorotase-like protein compare
PP_0966 -3.2 -12.3 Histidinol dehydrogenase compare
PP_4679 -3.2 -7.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -3.2 -6.0 Acetylglutamate kinase compare
PP_1988 -3.2 -9.8 3-isopropylmalate dehydrogenase compare
PP_4678 -3.1 -14.1 Ketol-acid reductoisomerase compare
PP_4757 -3.1 -9.5 D-glucarate dehydratase / L-idarate epimerase conserved
PP_4126 -3.0 -2.9 NADH-quinone oxidoreductase subunit I compare
PP_2337 -2.8 -1.9 aconitate isomerase compare
PP_4680 -2.8 -15.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -2.8 -6.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1168 -2.8 -8.0 D-glucuronate / D-galacturonate TRAP transporter, small permease component (from data) conserved
PP_4890 -2.8 -6.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_1654 -2.7 -4.5 cysteine synthase B compare
PP_1171 -2.7 -13.1 Uronate dehydrogenase (EC 1.1.1.203) (from data) conserved
PP_1111 -2.6 -10.3 putative Synthetase compare
PP_1167 -2.6 -7.1 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) conserved
PP_1169 -2.6 -11.5 D-glucuronate / D-galacturonate TRAP transporter, solute receptor component (from data) conserved
PP_3511 -2.6 -10.7 Branched-chain-amino-acid aminotransferase compare
PP_5128 -2.6 -7.9 Dihydroxy-acid dehydratase compare
PP_1025 -2.6 -14.1 2-isopropylmalate synthase compare
PP_4758 -2.6 -11.7 Major facilitator family transporter conserved
PP_0965 -2.6 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2000 -2.5 -3.8 amidophosphoribosyl transferase compare
PP_1170 -2.5 -6.1 D-glucaro-1,5-lactonase UxuL (from data) conserved
PP_4782 -2.5 -4.8 Phosphomethylpyrimidine kinase compare
PP_1233 -2.4 -7.3 sulfurtransferase compare
PP_0735 -2.4 -3.5 molybdopterin-synthase adenylyltransferase compare
PP_4759 -2.3 -7.1 transcriptional regulator, GntR family compare
PP_1110 -2.3 -6.0 serine acetyltransferase compare
PP_2328 -2.3 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_4799 -2.3 -3.1 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2327 -2.2 -6.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4696 -2.2 -3.0 Nitrogen regulation protein NR(I) compare
PP_5015 -2.2 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1109 -2.2 -15.2 Transcriptional regulator, GntR family compare
PP_1079 -2.2 -7.1 Ornithine carbamoyltransferase compare
PP_5104 -2.1 -7.7 thiazole synthase compare
PP_1994 -2.1 -3.0 tRNA pseudouridine (38-40)synthase compare
PP_4122 -2.0 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5098 -1.9 -8.4 methionine biosynthesis protein MetW compare
PP_0082 -1.8 -4.6 tryptophan synthase alpha chain compare
PP_0291 -1.7 -2.7 conserved protein of unknown function compare
PP_5097 -1.7 -10.2 homoserine O-acetyltransferase compare
PP_4695 -1.6 -7.6 Sensory box histidine kinase compare
PP_2433 -1.6 -2.8 conserved protein of unknown function compare
PP_1764 -1.6 -7.6 Phosphoglycolate phosphatase 2 compare
PP_4874 -1.6 -1.0 50S ribosomal protein L9 compare
PP_2910 -1.5 -6.8 L-2-hydroxyglutarate oxidase conserved
PP_4129 -1.5 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1076 -1.5 -4.5 aquaglyceroporin compare
PP_5328 -1.4 -4.1 putative phosphate transport system permease protein compare
PP_4131 -1.4 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_2388 -1.4 -3.0 Transporter, LysE family compare
PP_2336 -1.4 -2.7 aconitate hydratase 1 compare
PP_4121 -1.4 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PP_2217 -1.4 -3.4 enoyl-CoA hydratase compare
PP_1075 -1.4 -6.8 glycerol kinase compare
PP_0888 -1.4 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_0406 -1.3 -4.1 Nucleotidyltransferase family protein compare
PP_5198 -1.3 -3.0 conserved protein of unknown function compare
PP_1995 -1.3 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0083 -1.3 -4.4 tryptophan synthase beta chain compare
PP_1664 -1.3 -4.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_4130 -1.3 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0874 -1.3 -2.1 conserved protein of unknown function compare
PP_1468 -1.3 -2.5 Tyrosine recombinase XerD compare
PP_5350 -1.2 -2.4 Transcriptional regulator, RpiR family compare
PP_5095 -1.2 -1.2 pyrroline-5-carboxylate reductase compare
PP_2001 -1.2 -6.9 O-succinylhomoserine sulfhydrylase compare
PP_0362 -1.2 -7.6 Biotin synthase compare
PP_1112 -1.2 -6.7 conserved membrane protein of unknown function compare
PP_5327 -1.2 -5.4 putative phosphate ABC transporter, permease subunit compare
PP_3505 -1.1 -2.5 conserved protein of unknown function compare
PP_5471 -1.1 -2.3 putative response regulator receiver protein compare
PP_1231 -1.1 -3.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1142 -1.1 -1.5 conserved protein of unknown function compare
PP_3052 -1.1 -1.6 conserved protein of unknown function compare
PP_4120 -1.1 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_5230 -1.1 -2.3 Tyrosine recombinase XerC compare
PP_0164 -1.1 -4.5 conserved protein of unknown function compare
PP_3110 -1.1 -2.1 protein of unknown function compare
PP_0787 -1.0 -3.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2442 -1.0 -2.7 conserved protein of unknown function, DUF480 family compare
PP_4124 -1.0 -2.6 NADH-quinone oxidoreductase subunit G compare
PP_1366 -1.0 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_1237 -1.0 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1672 -1.0 -3.4 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1790 -1.0 -3.1 putative Acylneuraminate cytidylyltransferase compare
PP_2378 -1.0 -1.9 Fe/S biogenesis protein NfuA compare
PP_3043 -1.0 -2.5 conserved protein of unknown function compare
PP_2929 -1.0 -4.7 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1673 -1.0 -3.6 cobyrinate a,c-diamide synthase compare
PP_0880 -1.0 -2.6 dipeptide ABC transporter - putative membrane subunit compare
PP_0855 -1.0 -1.4 conserved protein of unknown function compare
PP_0232 -1.0 -1.5 ATP-binding taurine transporter subunit compare
PP_2414 -0.9 -1.2 conserved exported protein of unknown function compare
PP_t29 -0.9 -1.8 tRNA-Ala compare
PP_3318 -0.9 -1.9 conserved protein of unknown function compare
PP_0126 -0.9 -2.9 Cytochrome c4 compare
PP_2581 -0.9 -1.5 conserved protein of unknown function compare
PP_4199 -0.9 -1.4 putative Lipoprotein compare
PP_1826 -0.9 -1.5 Hydrolase, isochorismatase family compare
PP_3963 -0.9 -3.7 conserved protein of unknown function compare
PP_4004 -0.9 -2.3 DNA translocase FtsK compare
PP_0420 -0.9 -6.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -0.9 -7.1 Anthranilate synthase component 1 compare
PP_3380 -0.9 -2.4 2-ketogluconate utilization repressor compare
PP_2499 -0.9 -1.4 conserved protein of unknown function compare
PP_0422 -0.9 -3.3 Indole-3-glycerol phosphate synthase compare
PP_0421 -0.9 -4.5 Anthranilate phosphoribosyltransferase compare
PP_3924 -0.9 -1.5 conserved protein of unknown function compare
PP_3121 -0.9 -1.9 transcriptional regulator, LysR family compare
PP_4892 -0.9 -3.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4264 -0.9 -4.8 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_2868 -0.8 -4.2 Transcriptional regulator, Cro/CI family compare
PP_0405 -0.8 -7.1 conserved protein of unknown function compare
PP_0393 -0.8 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4008 -0.8 -4.2 ATP-dependent serine protease compare
PP_0627 -0.8 -2.6 conserved protein of unknown function compare
PP_1355 -0.8 -7.0 Muropeptide permease AmpG compare
PP_0434 -0.8 -6.3 Anhydro-N-acetylmuramic acid kinase compare
PP_1428 -0.8 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_1216 -0.8 -1.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4262 -0.8 -2.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0313 -0.8 -1.7 putative electron transfer flavoprotein beta subunit compare
PP_1348 -0.8 -3.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5717 -0.8 -1.5 conserved protein of unknown function compare
PP_3506 -0.8 -3.0 Magnesium chelatase, subunit ChII compare
PP_4379 -0.8 -3.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4681 -0.8 -1.4 conserved protein of unknown function compare
PP_2646 -0.8 -2.1 conserved protein of unknown function compare
PP_3481 -0.8 -1.7 conserved exported protein of unknown function compare
PP_2928 -0.8 -4.3 Saccharopine dehydrogenase compare
PP_5216 -0.8 -1.2 exopolyphosphatase compare
PP_5329 -0.8 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4964 -0.8 -0.9 D-erythrose 4-phosphate dehydrogenase compare
PP_4620 -0.8 -4.3 Fumarylacetoacetase compare
PP_1362 -0.8 -2.4 pyruvate kinase II compare
PP_2145 -0.8 -4.2 beta-N-acetylglucosaminidase compare
PP_4875 -0.8 -2.8 conserved membrane protein of unknown function compare
PP_4263 -0.8 -3.0 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1892 -0.8 -2.6 conserved protein of unknown function compare
PP_3378 -0.7 -1.8 putative 2-ketogluconokinase compare
PP_4392 -0.7 -4.6 chemotaxis protein methyltransferase compare
PP_1309 -0.7 -3.5 conserved exported protein of unknown function compare
PP_4895 -0.7 -1.6 tRNA dimethylallyltransferase compare
PP_2575 -0.7 -1.8 conserved exported protein of unknown function compare
PP_0435 -0.7 -5.4 Peptidase, M23/M37 family compare
PP_5303 -0.7 -2.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1598 -0.7 -3.1 regulatory intramembrane protein RIP zinc protease compare
PP_2181 -0.7 -1.8 Transcriptional regulator, Cro/CI family compare
PP_4342 -0.7 -2.1 flagellar synthesis regulator, putative ATPase compare
PP_0610 -0.7 -2.5 conserved exported protein of unknown function compare
PP_0377 -0.7 -1.4 coenzyme PQQ synthesis protein D compare
PP_0621 -0.7 -2.9 conserved protein of unknown function compare
PP_2215 -0.7 -2.6 acetyl-CoA acetyltransferase compare
PP_5029 -0.7 -5.4 N-formylglutamate deformylase compare
PP_0241 -0.7 -2.2 Transporter compare
PP_2196 -0.7 -1.9 agmatinase compare
PP_1317 -0.7 -2.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4619 -0.7 -3.8 Maleylacetoacetate isomerase compare
PP_0401 -0.7 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PP_4699 -0.7 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0022 -0.7 -0.9 hypothetical protein compare
PP_3591 -0.7 -2.7 Delta 1-piperideine-2-carboxylate reductase compare
PP_5045 -0.7 -2.1 tRNA sulfurtransferase compare
PP_1328 -0.7 -1.7 Protein MraZ compare
PP_1318 -0.7 -4.1 Cytochrome b compare
PP_4977 -0.7 -4.8 5,10-methylenetetrahydrofolate reductase compare
PP_2990 -0.7 -3.0 Transcriptional regulator, MerR family compare
PP_4481 -0.7 -3.4 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_4143 -0.7 -2.3 conserved protein of unknown function compare
PP_4067 -0.7 -4.2 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_2402 -0.7 -1.5 putative Sensor histidine kinase compare
PP_1683 -0.7 -1.6 Transcriptional regulator, MarR family compare
PP_5705 -0.7 -1.9 protein of unknown function compare
PP_4259 -0.7 -4.2 Iron-sulfur cluster-binding protein compare
PP_2132 -0.7 -1.9 Universal stress protein compare
PP_0834 -0.7 -0.9 Sec translocation complex subunit YajC compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Glucuronic Acid in Pseudomonas putida KT2440

For carbon source D-Glucuronic Acid across organisms