Experiment set6IT060 for Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Compare to:

No phage control

200 most important genes:

  gene name fitness t score description  
GFF2216 -6.1 -8.3 DNA polymerase I (EC 2.7.7.7) compare
GFF2475 -4.4 -3.6 Ribonuclease III (EC 3.1.26.3) compare
GFF824 -2.8 -4.6 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
GFF1634 -2.8 -3.7 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) compare
GFF4634 -2.7 -8.3 Citrate synthase (si) (EC 2.3.3.1) compare
GFF2389 -2.5 -2.9 Trk system potassium uptake protein TrkA compare
GFF825 -2.5 -3.2 RNA-binding protein Hfq compare
GFF1076 -2.4 -3.9 Aerobic respiration control protein arcA compare
GFF2061 -2.4 -8.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
GFF3901 -2.3 -2.5 Phosphomannomutase (EC 5.4.2.8) compare
GFF1415 -2.2 -1.5 UPF0337 protein yjbJ compare
GFF3490 -2.1 -11.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
GFF4890 -2.1 -10.3 Transport ATP-binding protein CydC compare
GFF1303 -2.0 -1.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
GFF4837 -2.0 -10.4 'GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2)' transl_table=11 compare
GFF3862 -2.0 -5.8 Deoxycytidine triphosphate deaminase (EC 3.5.4.13) compare
GFF2173 -2.0 -4.5 Chromosomal replication initiator protein DnaA compare
GFF2784 -1.9 -4.1 GTP-binding and nucleic acid-binding protein YchF compare
GFF4891 -1.9 -9.3 Transport ATP-binding protein CydD compare
GFF2946 -1.9 -4.5 RNA polymerase sigma-54 factor RpoN compare
GFF2968 -1.8 -6.4 Stringent starvation protein A compare
GFF2276 -1.8 -2.1 Manganese superoxide dismutase (EC 1.15.1.1) compare
GFF3887 -1.8 -7.1 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
GFF4647 -1.7 -6.4 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
GFF633 -1.7 -4.6 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) compare
GFF2881 -1.7 -7.3 WzxE protein compare
GFF4600 -1.7 -3.9 SeqA protein, negative modulator of initiation of replication compare
GFF4646 -1.7 -9.1 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
GFF3461 -1.6 -1.4 hypothetical protein compare
GFF192 -1.6 -6.8 'Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41)' transl_table=11 compare
GFF4027 -1.6 -1.5 Flagellar biosynthesis protein FliS compare
GFF2954 -1.6 -8.9 Aerobic respiration control sensor protein arcB (EC 2.7.3.-) compare
GFF4355 -1.6 -1.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
GFF3890 -1.5 -1.8 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
GFF1256 -1.5 -4.2 Chromosome (plasmid) partitioning protein ParA compare
GFF1716 -1.5 -5.7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
GFF4243 -1.4 -1.0 Probable secreted protein compare
GFF55 -1.4 -7.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
GFF4014 -1.4 -1.3 Flagellar protein FliJ compare
GFF392 -1.4 -1.8 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) compare
GFF121 -1.4 -3.7 Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) compare
GFF2991 -1.3 -2.1 Tyrosine recombinase XerD compare
GFF4162 -1.3 -4.0 DNA repair protein RecN compare
GFF559 -1.3 -1.9 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
GFF4652 -1.2 -2.2 Tol biopolymer transport system, TolR protein compare
GFF355 -1.2 -2.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
GFF242 -1.2 -4.2 Magnesium and cobalt transport protein CorA compare
GFF389 -1.2 -1.9 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
GFF2627 -1.2 -1.9 putative amino acid ABC transporter compare
GFF3975 -1.2 -0.9 hypothetical protein compare
GFF1750 -1.2 -3.2 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
GFF241 -1.2 -5.5 ATP-dependent DNA helicase UvrD/PcrA compare
GFF2501 -1.2 -0.9 FIG00638667: hypothetical protein compare
GFF3888 -1.1 -2.8 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
GFF2882 -1.1 -4.9 Lipopolysaccharide biosynthesis protein RffA compare
GFF2621 -1.1 -1.6 FIG01045328: hypothetical protein compare
GFF4353 -1.1 -3.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
GFF122 -1.1 -5.1 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) compare
GFF4270 -1.1 -1.0 FIG00637869: hypothetical protein compare
GFF1934 -1.0 -2.5 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
GFF3166 -1.0 -3.1 ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase compare
GFF3667 -1.0 -1.4 Cytidylate kinase (EC 2.7.4.25) compare
GFF1863 -1.0 -1.1 Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase compare
GFF4158 -1.0 -1.0 tmRNA-binding protein SmpB compare
GFF87 -1.0 -1.6 C4-type zinc finger protein, DksA/TraR family compare
GFF4614 -1.0 -0.9 hypothetical protein compare
GFF1901 -1.0 -4.3 Phosphate acetyltransferase (EC 2.3.1.8) compare
GFF3712 -0.9 -2.7 Cyclic AMP receptor protein compare
GFF2873 -0.9 -1.2 hypothetical protein compare
GFF2664 -0.9 -2.0 FIG01200701: possible membrane protein compare
GFF632 -0.9 -4.4 Methyl-directed repair DNA adenine methylase (EC 2.1.1.72) compare
GFF635 -0.9 -2.4 Tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
GFF4409 -0.9 -5.2 YbbM seven transmembrane helix protein compare
GFF2517 -0.9 -0.9 [NiFe] hydrogenase nickel incorporation HybF-like protein compare
GFF1057 -0.9 -1.1 DNA repair protein RadA compare
GFF3370 -0.9 -1.9 COG1399 protein, clustered with ribosomal protein L32p compare
GFF190 -0.9 -2.7 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) compare
GFF2473 -0.9 -2.9 DNA recombination and repair protein RecO compare
GFF1090 -0.9 -2.1 Chaperone protein DnaJ compare
GFF1900 -0.8 -4.3 Acetate kinase (EC 2.7.2.1) compare
GFF1885 -0.8 -4.7 NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) compare
GFF2620 -0.8 -0.9 FIG01045674: hypothetical protein compare
GFF384 -0.8 -1.3 UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-) compare
GFF2477 -0.8 -3.4 Translation elongation factor LepA compare
GFF4096 -0.8 -1.2 FIG01047254: hypothetical protein compare
GFF1888 -0.8 -1.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
GFF3589 -0.8 -2.3 Secretion system chaparone SscA compare
GFF1886 -0.8 -5.0 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
GFF1074 -0.8 -1.3 putative inner membrane protein compare
GFF1642 -0.8 -1.0 putative cytoplasmic protein compare
GFF3722 -0.8 -1.0 Putative cytoplasmic protein ,probably associated with Glutathione-regulated potassium-efflux compare
GFF4408 -0.8 -2.8 YbbL ABC transporter ATP-binding protein compare
GFF27 -0.8 -1.4 Copper homeostasis protein CutF precursor / Lipoprotein NlpE involeved in surface adhesion compare
GFF4465 -0.8 -1.5 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA compare
GFF4390 -0.7 -3.0 Recombination protein RecR compare
GFF4182 -0.7 -3.5 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
GFF4601 -0.7 -2.9 Phosphoglucomutase (EC 5.4.2.2) compare
GFF1385 -0.7 -0.9 hypothetical protein compare
GFF3378 -0.7 -1.0 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
GFF1553 -0.7 -0.6 FIG01046564: hypothetical protein compare
GFF146 -0.7 -2.2 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
GFF2845 -0.7 -2.0 Tail-specific protease precursor (EC 3.4.21.102) compare
GFF1842 -0.7 -1.1 LysR family transcriptional regulator STM2281 compare
GFF2541 -0.7 -2.3 putative cytoplasmic protein compare
GFF2506 -0.7 -2.1 Multiple antibiotic resistance protein MarA compare
GFF2199 -0.7 -2.4 FIG01045596: hypothetical protein compare
GFF2729 -0.7 -0.7 Protein YciE compare
GFF4460 -0.7 -1.6 Putative inner membrane protein compare
GFF2149 -0.7 -2.7 Malate dehydrogenase (EC 1.1.1.37) compare
GFF2767 -0.7 -2.6 Putative ACR protein compare
GFF4387 -0.7 -1.3 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
GFF4453 -0.7 -1.7 Fimbriae-like periplasmic protein SfmF compare
GFF4822 -0.7 -2.0 Queuosine biosynthesis QueD, PTPS-I compare
GFF4118 -0.7 -1.2 tRNA-Thr-CGT compare
GFF4126 -0.7 -0.7 FIG01047407: hypothetical protein compare
GFF1881 -0.7 -4.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
GFF2868 -0.7 -1.1 hypothetical protein compare
GFF2094 -0.7 -1.6 Putative outer membrane lipoprotein compare
GFF1736 -0.7 -0.9 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
GFF2553 -0.7 -0.9 Osmotically inducible protein C compare
GFF183 -0.7 -4.1 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
GFF1887 -0.7 -2.8 NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) compare
GFF2208 -0.7 -2.2 DNA-damage-inducible protein I compare
GFF1930 -0.7 -1.5 DedD protein compare
GFF1756 -0.7 -4.5 DNA recombination and repair protein RecF compare
GFF1935 -0.7 -1.5 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
GFF4317 -0.7 -3.0 Ribonucleotide reductase transcriptional regulator NrdR compare
GFF325 -0.7 -2.6 PTS system, gluconate-specific IIB component (EC 2.7.1.69) compare
GFF3149 -0.7 -3.6 Type I secretion outer membrane protein, TolC precursor compare
GFF2623 -0.7 -0.6 Putative inner membrane protein compare
GFF1915 -0.6 -2.2 Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) compare
GFF4341 -0.6 -1.4 Probable secreted protein compare
GFF987 -0.6 -0.9 FIG00637915: hypothetical protein compare
GFF522 -0.6 -3.5 Low-affinity inorganic phosphate transporter compare
GFF4219 -0.6 -1.5 glycerol dehyrdratase activator compare
GFF865 -0.6 -2.2 Redox-sensing transcriptional regulator QorR compare
GFF34 -0.6 -1.0 FIG01280259: hypothetical protein compare
GFF2119 -0.6 -1.0 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
GFF1879 -0.6 -3.5 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
GFF675 -0.6 -4.2 Excinuclease ABC subunit B compare
GFF2698 -0.6 -3.5 Exoribonuclease II (EC 3.1.13.1) compare
GFF2741 -0.6 -2.9 Potassium voltage-gated channel subfamily KQT; possible potassium channel, VIC family compare
GFF1910 -0.6 -1.8 Putative Nudix hydrolase YfcD (EC 3.6.-.-) compare
GFF2244 -0.6 -1.0 FIG074102: hypothetical protein compare
GFF4835 -0.6 -1.7 ParE toxin protein compare
GFF1577 -0.6 -1.8 Putative inner membrane protein compare
GFF2989 -0.6 -4.2 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) compare
GFF1792 -0.6 -1.0 Spermidine export protein MdtJ compare
GFF2880 -0.6 -2.4 4-alpha-L-fucosyltransferase (EC 2.4.1.-) compare
GFF2290 -0.6 -1.0 Putative periplasmic protein compare
GFF2242 -0.6 -2.1 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
GFF269 -0.6 -2.1 NAD(P)H-flavin reductase (EC 1.5.1.29) (EC 1.16.1.3) compare
GFF3298 -0.6 -0.9 FIG01049236: hypothetical protein compare
GFF1880 -0.6 -2.9 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
GFF2719 -0.6 -2.2 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
GFF684 -0.6 -1.1 Putative membrane protein compare
GFF3533 -0.6 -1.1 FIG00638687: hypothetical protein compare
GFF341 -0.6 -0.7 RmbA compare
GFF4192 -0.6 -1.6 DNA-binding protein HU-alpha compare
GFF848 -0.6 -1.5 Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69) compare
GFF2220 -0.6 -2.5 Nitrogen regulation protein NR(I) compare
GFF2858 -0.6 -0.8 G-nucleotide exchange factor SopE compare
GFF1659 -0.6 -2.1 Flagellar protein FlhE compare
GFF1433 -0.6 -1.2 Putative inner membrane or exported protein compare
GFF2469 -0.6 -1.1 Transcriptional regulator, LysR family compare
GFF2564 -0.6 -1.4 Gfa-like protein compare
GFF694 -0.6 -1.4 Predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor protein YbhG compare
GFF3427 -0.6 -1.7 Probable lipoprotein envE precursor compare
GFF1098 -0.6 -2.2 FIG074102: hypothetical protein compare
GFF1600 -0.5 -1.1 HAD-superfamily hydrolase, subfamily IA compare
GFF3625 -0.5 -0.9 Transcriptional regulator, TetR family compare
GFF707 -0.5 -2.5 Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1) compare
GFF434 -0.5 -1.7 hypothetical protein compare
GFF1610 -0.5 -0.8 hypothetical protein compare
GFF3566 -0.5 -1.1 major outer membrane lipoprotein compare
GFF2982 -0.5 -1.3 hypothetical protein compare
GFF2631 -0.5 -1.7 Protein ydcF compare
GFF4234 -0.5 -1.0 Possible transmembrane regulator compare
GFF3133 -0.5 -2.7 Putative cell division protein precursor compare
GFF3949 -0.5 -1.5 Propanediol utilization transcriptional activator compare
GFF1081 -0.5 -2.4 UPF0246 protein YaaA compare
GFF718 -0.5 -1.6 putative inner membrane protein compare
GFF1304 -0.5 -1.6 FIG004136: Prepilin peptidase dependent protein C precursor compare
GFF661 -0.5 -2.5 6-phosphogluconolactonase (EC 3.1.1.31) compare
GFF4304 -0.5 -2.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
GFF2392 -0.5 -1.1 Peptide deformylase (EC 3.5.1.88) compare
GFF189 -0.5 -2.0 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
GFF2834 -0.5 -1.1 FIG00510464: hypothetical protein compare
GFF1890 -0.5 -3.2 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
GFF1891 -0.5 -1.5 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
GFF4384 -0.5 -2.3 Putative inner membrane protein compare
GFF296 -0.5 -3.5 Multidrug resistance protein D compare
GFF934 -0.5 -2.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
GFF2796 -0.5 -2.1 hypothetical protein compare
GFF188 -0.5 -2.8 Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8) compare
GFF4596 -0.5 -0.9 Ferric uptake regulation protein FUR compare
GFF1699 -0.5 -0.7 BarA-associated response regulator UvrY (= GacA = SirA) compare
GFF3460 -0.5 -1.2 Transglycosylase associated protein compare
GFF495 -0.5 -3.1 Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate compare
GFF3602 -0.5 -1.5 Type III secretion cytoplasmic protein (YscL) compare


Specific Phenotypes

None in this experiment

For Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 in nophagecontrol experiments

For nophagecontrol Kanamycin sulfate across organisms