Experiment set6IT056 for Rhodospirillum rubrum S1H

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Succinic Acid; Light intensity 9 uM

200 most important genes:

  gene name fitness t score description  
Rru_A0118 -2.6 -3.1 type II secretion system protein E (NCBI) compare
Rru_A0469 -2.4 -13.6 Ketol-acid reductoisomerase (NCBI) compare
Rru_A0397 -2.3 -8.4 Argininosuccinate lyase (NCBI) compare
Rru_A0977 -2.3 -1.4 hypothetical protein (NCBI) compare
Rru_A1786 -2.3 -18.0 Dihydroxy-acid dehydratase (NCBI) compare
Rru_A2886 -2.2 -19.4 Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI) compare
Rru_A2055 -2.2 -3.1 Peptidase S49 (NCBI) compare
Rru_A1593 -2.2 -6.4 Peptidase M50, putative membrane-associated zinc metallopeptidase (NCBI) compare
Rru_A3548 -2.2 -14.3 Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase (NCBI) compare
Rru_A2979 -2.2 -7.8 Chlorophyllide reductase subunit Y (NCBI) compare
Rru_A1928 -2.2 -13.7 Yeast 2-isopropylmalate synthase (NCBI) compare
Rru_A1189 -2.1 -11.9 3-isopropylmalate dehydratase large subunit region (NCBI) compare
Rru_A1895 -2.1 -3.8 Glutamine amidotransferase of anthranilate synthase (NCBI) compare
Rru_A1179 -2.1 -1.3 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A0467 -2.0 -14.7 Acetolactate synthase, large subunit, biosynthetic type (NCBI) compare
Rru_A0394 -2.0 -3.3 Amino-acid N-acetyltransferase (NCBI) compare
Rru_A3549 -2.0 -6.9 Cobyric acid synthase CobQ (NCBI) compare
Rru_A1896 -2.0 -7.9 Anthranilate phosphoribosyl transferase (NCBI) compare
Rru_A3751 -2.0 -10.2 Argininosuccinate synthase (NCBI) compare
Rru_A2403 -2.0 -13.3 Inositol phosphatase/fructose-1,6-bisphosphatase (NCBI) compare
Rru_A3214 -2.0 -13.7 O-succinylhomoserine sulfhydrylase (NCBI) compare
Rru_A2404 -2.0 -11.7 Phosphoribulokinase (NCBI) compare
Rru_A3227 -1.9 -10.8 conserved hypothetical protein, potential methyltransferase (NCBI) compare
Rru_A0468 -1.9 -2.5 Acetolactate synthase, small subunit (NCBI) compare
Rru_A2974 -1.9 -7.9 Photosynthetic reaction centre M subunit (NCBI) compare
Rru_A0613 -1.9 -4.5 Bacteriochlorophyll 4-vinyl reductase (NCBI) compare
Rru_A0203 -1.9 -1.4 hypothetical protein (NCBI) compare
Rru_A3428 -1.9 -11.5 Tryptophan synthase (NCBI) compare
Rru_A0622 -1.9 -8.3 Light-independent protochlorophyllide reductase, B subunit (NCBI) compare
Rru_A1190 -1.9 -3.2 3-isopropylmalate dehydratase small subunit region (NCBI) compare
Rru_A0621 -1.9 -14.7 Magnesium-chelatase, subunit H (NCBI) compare
Rru_A2400 -1.8 -12.0 Ribulose-bisphosphate carboxylase, form II (NCBI) compare
Rru_A2978 -1.8 -7.1 Chlorophyllide reductase subunit Z (NCBI) compare
Rru_A0624 -1.8 -7.9 2-vinyl bacteriochlorophyllide hydratase (NCBI) compare
Rru_A3264 -1.8 -8.3 Histidinol-phosphate aminotransferase (NCBI) compare
Rru_A3425 -1.8 -9.6 Phosphoribosylanthranilate isomerase (NCBI) compare
Rru_A0670 -1.8 -1.8 Cobalbumin biosynthesis enzyme (NCBI) compare
Rru_A1530 -1.8 -13.0 5,10-methylenetetrahydrofolate reductase (NCBI) compare
Rru_A3267 -1.8 -8.1 Methionine biosynthesis MetW (NCBI) compare
Rru_A3162 -1.8 -12.3 Prephenate dehydratase (NCBI) compare
Rru_A2986 -1.8 -6.5 Fumarate reductase/succinate dehydrogenase flavoprotein-like (NCBI) compare
Rru_A2975 -1.8 -10.1 Photosynthetic reaction centre protein L subunit (NCBI) compare
Rru_A2510 -1.8 -2.0 hypothetical protein (NCBI) compare
Rru_A3427 -1.7 -12.8 Tryptophan synthase, beta chain (NCBI) compare
Rru_A3266 -1.7 -8.9 Homoserine O-acetyltransferase (NCBI) compare
Rru_A2760 -1.7 -1.5 hypothetical protein (NCBI) compare
Rru_A3594 -1.7 -1.0 Histidine biosynthesis protein HisF (NCBI) compare
Rru_A0617 -1.7 -3.8 Photosynthetic reaction center, H-chain (NCBI) compare
Rru_A2421 -1.7 -6.8 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
Rru_A3276 -1.7 -6.7 Ornithine carbamoyltransferase (NCBI) compare
Rru_A2951 -1.6 -0.8 hypothetical protein (NCBI) compare
Rru_A1735 -1.6 -1.0 hypothetical protein (NCBI) compare
Rru_A0485 -1.6 -5.3 Magnesium chelatase ATPase subunit I (NCBI) compare
Rru_A1191 -1.6 -7.7 3-isopropylmalate dehydrogenase (NCBI) compare
Rru_A3277 -1.5 -6.0 Acetylornithine and succinylornithine aminotransferase (NCBI) compare
Rru_A1897 -1.5 -3.8 Indole-3-glycerol-phosphate synthase (NCBI) compare
Rru_A2988 -1.5 -1.0 Precorrin-6X reductase (NCBI) compare
Rru_A1048 -1.5 -0.9 Protein of unknown function DUF465 (NCBI) compare
Rru_A1909 -1.5 -5.5 hypothetical protein (NCBI) compare
Rru_A1827 -1.4 -7.1 Glycine hydroxymethyltransferase (NCBI) compare
Rru_A1432 -1.4 -8.1 Nicotinate-nucleotide pyrophosphorylase (NCBI) compare
Rru_A3399 -1.4 -4.1 Transcriptional Regulator, BadM/Rrf2 family (NCBI) compare
Rru_A0615 -1.4 -4.2 photosynthetic complex assembly protein (NCBI) compare
Rru_A2193 -1.4 -9.8 Abc1 protein (NCBI) compare
Rru_A2057 -1.4 -0.5 Molybdopterin-guanine dinucleotide biosynthesis MobB region (NCBI) compare
Rru_A2772 -1.3 -3.2 ATP phosphoribosyltransferase (NCBI) compare
Rru_A2439 -1.3 -1.4 Mammalian cell entry related (NCBI) compare
Rru_A2987 -1.3 -3.6 hypothetical protein (NCBI) compare
Rru_A1319 -1.3 -2.8 Triphosphoribosyl-dephospho-CoA synthase (NCBI) compare
Rru_A0580 -1.3 -2.1 OsmC-like protein (NCBI) compare
Rru_A0894 -1.3 -2.2 stress protein (NCBI) compare
Rru_A0486 -1.3 -4.4 von Willebrand factor, type A (NCBI) compare
Rru_A0618 -1.3 -7.7 PUCC protein (NCBI) compare
Rru_A2980 -1.3 -5.8 Chlorophyllide reductase iron protein subunit X (NCBI) compare
Rru_A2525 -1.3 -6.0 Peptidase U32 (NCBI) compare
Rru_A2524 -1.3 -8.8 Peptidase U32 (NCBI) compare
Rru_A1105 -1.2 -3.9 tRNA synthetase, class II (G, H, P and S) (NCBI) compare
Rru_A2184 -1.2 -2.7 Pyridoxamine 5'-phosphate oxidase-related, FMN-binding (NCBI) compare
Rru_A0752 -1.2 -1.4 hypothetical protein (NCBI) compare
Rru_A1470 -1.2 -0.8 hypothetical protein (NCBI) compare
Rru_A0620 -1.2 -4.0 Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI) compare
Rru_A2020 -1.2 -2.5 Plasmid maintenance system killer (NCBI) compare
Rru_A2167 -1.2 -3.1 Phosphoribosylformylglycinamidine cyclo-ligase (NCBI) compare
Rru_A2512 -1.2 -3.0 3-oxoacyl-(acyl-carrier-protein) reductase (NCBI) compare
Rru_A0616 -1.2 -5.8 photosynthetic complex assembly protein (NCBI) compare
Rru_A3139 -1.2 -6.0 Transcriptional Regulator, GntR family (NCBI) compare
Rru_A3384 -1.2 -3.6 Precorrin-4 C11-methyltransferase region (NCBI) compare
Rru_A3165 -1.2 -5.0 Histidinol-phosphate phosphatase, putative, inositol monophosphatase (NCBI) compare
Rru_B0005 -1.1 -0.4 Glycosyl transferase (NCBI) compare
Rru_A1167 -1.1 -1.8 putative hydrogenase expression/formation protein HupK (NCBI) compare
Rru_A1309 -1.1 -4.7 acetoacetyl-CoA reductase (NCBI) compare
Rru_A3359 -1.1 -4.1 Cobyrinic acid a,c-diamide synthase CbiA (NCBI) compare
Rru_A2308 -1.1 -1.9 Transcriptional Regulator, ArsR family (NCBI) compare
Rru_A0668 -1.1 -1.4 Cobalamin-5-phosphate synthase CobS (NCBI) compare
Rru_A1473 -1.1 -2.4 hypothetical protein (NCBI) compare
Rru_A1434 -1.1 -5.9 Quinolinate synthetase A (NCBI) compare
Rru_A2989 -1.0 -2.6 Precorrin-3B C17-methyltransferase region (NCBI) compare
Rru_A2549 -1.0 -2.1 HAD-superfamily hydrolase subfamily IIB (NCBI) compare
Rru_A0614 -1.0 -3.9 hypothetical protein (NCBI) compare
Rru_A2748 -1.0 -1.8 ABC transporter component (NCBI) compare
Rru_A2895 -1.0 -4.8 Twin-arginine translocation pathway signal (NCBI) compare
Rru_A2472 -1.0 -6.3 hypothetical protein (NCBI) compare
Rru_A2990 -1.0 -2.7 precorrin-2 C20-methyltransferase (NCBI) compare
Rru_A0024 -1.0 -1.5 peptidase (NCBI) compare
Rru_A3599 -1.0 -1.3 20S proteasome, A and B subunits (NCBI) compare
Rru_A0150 -1.0 -2.4 hypothetical protein (NCBI) compare
Rru_A1308 -1.0 -5.0 Acyl-CoA dehydrogenase (NCBI) compare
Rru_A3173 -1.0 -1.5 Transcriptional Regulator, TetR family (NCBI) compare
Rru_A2981 -1.0 -1.6 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide (NCBI) compare
Rru_A2110 -1.0 -3.7 ATP-dependent Clp protease adaptor protein ClpS (NCBI) compare
Rru_A1866 -0.9 -5.1 Lytic transglycosylase, catalytic (NCBI) compare
Rru_A0525 -0.9 -4.7 Two component Transcriptional regulator, Winged helix family (NCBI) compare
Rru_A2478 -0.9 -3.6 ArgK protein (NCBI) compare
Rru_A0883 -0.9 -3.5 Sigma-24 (FecI) (NCBI) compare
Rru_A0432 -0.9 -5.5 4-hydroxythreonine-4-phosphate dehydrogenase (NCBI) compare
Rru_A2440 -0.9 -1.7 NADH:ubiquinone oxidoreductase 17.2 kD subunit (NCBI) compare
Rru_A1031 -0.9 -3.4 Ethanolamine ammonia-lyase (NCBI) compare
Rru_A3801 -0.9 -0.9 Enoyl-CoA hydratase/isomerase (NCBI) compare
Rru_A2391 -0.9 -2.1 hypothetical protein (NCBI) compare
Rru_A0627 -0.9 -3.2 Bacteriochlorophyll/chlorophyll synthetase (NCBI) compare
Rru_A3571 -0.9 -3.2 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) compare
Rru_A3542 -0.9 -6.2 malate dehydrogenase (NCBI) compare
Rru_A0654 -0.9 -2.8 Multiple antibiotic resistance (MarC)-related proteins (NCBI) compare
Rru_A1310 -0.9 -3.2 Acetyl-CoA C-acyltransferase (NCBI) compare
Rru_A3146 -0.9 -0.5 hypothetical protein (NCBI) compare
Rru_A3550 -0.9 -3.3 Cobyric acid synthase CobQ (NCBI) compare
Rru_A1348 -0.9 -0.8 Protein of unknown function DUF81 (NCBI) compare
Rru_A3271 -0.9 -2.7 glutathione S-transferase family protein (NCBI) compare
Rru_A0908 -0.8 -1.0 microcompartments protein (NCBI) compare
Rru_A0537 -0.8 -1.3 Protein of unknown function DUF955 (NCBI) compare
Rru_A3397 -0.8 -0.7 hypothetical protein (NCBI) compare
Rru_A0404 -0.8 -7.0 Amidophosphoribosyl transferase (NCBI) compare
Rru_A0032 -0.8 -2.2 TPR repeat (NCBI) compare
Rru_A0629 -0.8 -3.9 Geranylgeranyl reductase (NCBI) compare
Rru_A1617 -0.8 -1.4 Protein of unknown function DUF1289 (NCBI) compare
Rru_A0291 -0.8 -1.4 hypothetical protein (NCBI) compare
Rru_A0006 -0.8 -1.3 Plasmid maintenance system antidote protein (NCBI) compare
Rru_A3305 -0.8 -2.7 ABC transporter component (NCBI) compare
Rru_A3385 -0.8 -1.3 OmpA/MotB (NCBI) compare
Rru_A2885 -0.8 -2.6 Carbamoyl-phosphate synthase, small subunit (NCBI) compare
Rru_A1648 -0.8 -0.4 Helix-turn-helix protein, CopG (NCBI) compare
Rru_A3684 -0.8 -3.4 Sulfotransferase (NCBI) compare
Rru_A2445 -0.8 -2.0 Protein of unknown function DUF140 (NCBI) compare
Rru_A3270 -0.8 -2.7 Hydroxyacylglutathione hydrolase (NCBI) compare
Rru_A1636 -0.8 -0.8 NADH-ubiquinone oxidoreductase, chain 4L (NCBI) compare
Rru_A0329 -0.8 -1.7 hypothetical protein (NCBI) compare
Rru_A2257 -0.8 -0.7 Transcriptional Regulator, LysR family (NCBI) compare
Rru_A3254 -0.8 -1.9 ABC transporter component (NCBI) compare
Rru_A1854 -0.8 -4.2 Pyridoxal phosphate biosynthetic protein PdxJ (NCBI) compare
Rru_A3009 -0.8 -2.5 Aminotransferase class-III (NCBI) compare
Rru_A2865 -0.7 -2.3 Peptidase M24 (NCBI) compare
Rru_A1112 -0.7 -0.4 hypothetical protein (NCBI) compare
Rru_A3527 -0.7 -1.9 Protein of unknown function YGGT (NCBI) compare
Rru_A0561 -0.7 -4.5 Cytochrome bd ubiquinol oxidase, subunit II (NCBI) compare
Rru_A1900 -0.7 -0.7 Transcriptional Regulator, AsnC family (NCBI) compare
Rru_A3282 -0.7 -3.4 hypothetical protein (NCBI) compare
Rru_A2363 -0.7 -0.9 Endonuclease/exonuclease/phosphatase (NCBI) compare
Rru_A3170 -0.7 -2.1 Surface presentation of antigens (SPOA) protein (NCBI) compare
Rru_A1837 -0.7 -0.5 Porphobilinogen synthase (NCBI) compare
Rru_A1433 -0.7 -2.2 L-aspartate oxidase (NCBI) compare
Rru_A2161 -0.7 -6.1 Polyphosphate kinase (NCBI) compare
Rru_A0741 -0.7 -4.4 Signal Transduction Histidine Kinase (NCBI) compare
Rru_A2847 -0.7 -0.4 Transcriptional regulators, TraR/DksA family (NCBI) compare
Rru_A1529 -0.7 -3.7 Transcriptional Regulator, ArsR family (NCBI) compare
Rru_A3362 -0.7 -2.5 Uroporphyrin-III C-methyltransferase-like (NCBI) compare
Rru_A2043 -0.7 -3.0 hypothetical protein (NCBI) compare
Rru_A3587 -0.7 -1.8 hypothetical protein (NCBI) compare
Rru_A1439 -0.7 -2.1 Putative FecR (NCBI) compare
Rru_A1138 -0.7 -2.4 ABC transporter component (NCBI) compare
Rru_A3766 -0.7 -1.5 Transcriptional Regulator, MucR family (NCBI) compare
Rru_A1626 -0.7 -2.1 methyltransferase (NCBI) compare
Rru_A1803 -0.7 -1.0 Undecaprenol kinase (NCBI) compare
Rru_A0644 -0.7 -0.3 hypothetical protein (NCBI) compare
Rru_A1305 -0.7 -1.0 Predicted transcriptional regulator (NCBI) compare
Rru_A0318 -0.7 -1.4 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) compare
Rru_A1315 -0.7 -3.0 Sterol-binding (NCBI) compare
Rru_A0824 -0.7 -2.8 no description compare
Rru_A2131 -0.7 -2.7 hypothetical protein (NCBI) compare
Rru_A3642 -0.7 -0.6 Negative regulator of class I heat shock protein (NCBI) compare
Rru_A0128 -0.7 -1.1 Na+/H+ antiporter NhaA (NCBI) compare
Rru_A2888 -0.7 -2.1 hypothetical protein (NCBI) compare
Rru_A0016 -0.7 -3.1 3-beta-hydroxy-delta(5)-steroid dehydrogenase (NCBI) compare
Rru_A1677 -0.7 -1.0 Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) compare
Rru_A0097 -0.7 -1.3 Class I peptide chain release factor (NCBI) compare
Rru_A3010 -0.7 -0.8 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A0073 -0.7 -1.7 ribosomal subunit interface protein, putative (NCBI) compare
Rru_A1982 -0.7 -1.7 SEC-C domain protein (NCBI) compare
Rru_A0714 -0.7 -2.4 Protein of unknown function DUF1476 (NCBI) compare
Rru_A0086 -0.7 -0.9 Protein of unknown function DUF188 (NCBI) compare
Rru_A0848 -0.6 -1.7 Major facilitator superfamily MFS_1 (NCBI) compare
Rru_A1627 -0.6 -1.3 hypothetical protein (NCBI) compare
Rru_A2907 -0.6 -0.5 Anti-Sigma-factor antagonist (STAS) domain protein (NCBI) compare
Rru_A3380 -0.6 -0.7 hypothetical protein (NCBI) compare
Rru_A3382 -0.6 -1.3 Cobalamin biosynthesis protein CbiB (NCBI) compare
Rru_A1265 -0.6 -1.2 Transcriptional Regulator, DeoR family (NCBI) compare
Rru_A3328 -0.6 -3.0 OmpA/MotB (NCBI) compare
Rru_A1845 -0.6 -3.1 Arginyltransferase (NCBI) compare
Rru_A1219 -0.6 -3.4 Sigma54 Specific Transcriptional Regulator containing PAS, and Fis DNA-binding domains (NCBI) compare
Rru_A0696 -0.6 -1.2 RNA methyltransferase TrmH, group 1 (NCBI) compare
Rru_A3701 -0.6 -2.6 Transcriptional Regulator, TetR family (NCBI) compare


Specific Phenotypes

None in this experiment

For Rhodospirillum rubrum S1H in light experiments

For light Succinic Acid across organisms