Experiment set6IT037 for Agrobacterium fabrum C58

Compare to:

Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days

200 most important genes:

  gene name fitness t score description  
Atu0030 -5.2 -1.9 phosphocarrier protein HPr compare
Atu2036 -4.8 -14.4 acetolactate synthase III, large subunit compare
Atu3908 -4.6 -14.3 GntR family transcriptional regulator compare
Atu0038 -4.4 -6.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0043 -4.2 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu3707 -3.8 -3.1 phosphoserine aminotransferase compare
Atu0679 -3.7 -7.9 ATP phosphoribosyltransferase compare
Atu1874 -3.7 -4.4 RecA protein compare
Atu2040 -3.7 -6.4 phosphoserine phosphatase compare
Atu2057 -3.7 -3.6 DNA helicase II compare
Atu0678 -3.7 -8.5 histidyl-tRNA synthetase compare
Atu1359 -3.6 -1.3 dnaK deletion suppressor protein compare
Atu3910 -3.6 -8.5 LamB/YcsF family protein compare
Atu1588 -3.6 -11.3 homoserine dehydrogenase compare
Atu0017 -3.4 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1750 -3.4 -8.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu2439 -3.4 -1.7 hypothetical protein compare
Atu4773 -3.3 -2.4 two component response regulator compare
Atu1687 -3.3 -9.8 anthranilate phosphoribosyltransferase compare
Atu6098 -3.3 -1.2 transcriptional regulator, HTH family compare
Atu2728 -3.2 -3.1 beta (1-->2) glucan export ATP-binding protein compare
Atu0537 -3.2 -8.7 histidinol dehydrogenase compare
Atu2289 -3.2 -15.7 anthranilate synthase component I and II compare
Atu1417 -3.2 -10.1 enoyl-CoA hydratase compare
Atu3706 -3.1 -7.2 D-3-phosphoglycerate dehydrogenase compare
Atu1077 -3.0 -5.7 DNA repair protein compare
Atu3763 -3.0 -2.7 hypothetical protein compare
Atu0039 -2.9 -2.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu1129 -2.9 -11.2 excinuclease ABC chain C compare
Atu3912 -2.9 -7.9 hypothetical protein compare
Atu0269 -2.8 -4.8 exodeoxyribonuclease VII large subunit compare
Atu0769 -2.7 -3.0 protoheme IX farnesyltransferase compare
Atu3913 -2.6 -7.5 biotin carboxylase compare
Atu3469 -2.6 -4.8 phosphoglyceromutase compare
Atu1205 -2.6 -12.9 threonine dehydratase compare
Atu1354 -2.6 -1.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0331 -2.5 -3.0 sigma-54 modulation protein compare
Atu3885 -2.5 -9.8 inositol monophosphatase compare
Atu0086 -2.5 -1.8 ribosome-binding factor A compare
Atu0093 -2.5 -6.4 Recombination protein compare
Atu0073 -2.5 -7.7 recF-like protein compare
Atu1688 -2.4 -8.5 indole-3-glycerol-phosphate synthase compare
Atu0040 -2.4 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0041 -2.3 -2.9 glutamine amidotransferase compare
Atu4616 -2.3 -3.1 dTDP-4-dehydrorhamnose reductase compare
Atu1039 -2.3 -4.7 DNA repair protein RecO compare
Atu3755 -2.3 -4.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1513 -2.3 -7.5 ABC excinuclease subunit A compare
Atu0971 -2.3 -4.5 two component sensor kinase compare
Atu4317 -2.1 -3.7 TetR family transcriptional regulator compare
Atu1683 -2.1 -3.6 hypothetical protein compare
Atu4055 -2.1 -6.2 endo-1,3-1,4-beta-glycanase compare
Atu1364 -2.0 -4.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3311 -2.0 -14.6 phosphomannose isomerase compare
Atu2684 -2.0 -2.7 hypothetical protein compare
Atu4166 -2.0 -2.6 UDP-glucose 4-epimerase compare
Atu0031 -2.0 -1.7 PTS system, IIA component compare
Atu0777 -2.0 -1.2 hypothetical protein compare
Atu0141 -2.0 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu8167 -1.9 -9.8 putative transmembrane protein compare
Atu4711 -1.9 -4.9 two component sensor kinase compare
Atu1850 -1.9 -4.0 phosphoribosylformylglycinamidine synthetase II compare
Atu2648 -1.8 -4.0 hypothetical protein compare
Atu0647 -1.8 -6.8 phosphoribosylamine--glycine ligase compare
Atu2083 -1.8 -3.1 DNA repair protein RecN compare
Atu3754 -1.8 -7.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3739 -1.8 -3.3 phosphoglycerate kinase compare
Atu1141 -1.8 -6.8 Phosphoribosylglycinamide synthetase compare
Atu0977 -1.8 -3.1 serine protease DO-like protease compare
Atu3353 -1.8 -9.4 mannose-1-phosphate guanylyltransferase compare
Atu1845 -1.7 -3.1 phosphoribosylformylglycinamidine synthase I compare
Atu2650 -1.7 -10.0 glycerol-3-phosphate dehydrogenase compare
Atu0399 -1.7 -5.9 dihydroorotase compare
Atu2238 -1.7 -7.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2183 -1.7 -6.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2237 -1.7 -5.4 cytochrome c1 compare
Atu0876 -1.7 -2.7 superoxide dismutase compare
Atu0723 -1.7 -2.2 FAD dependent oxidoreductase compare
Atu0188 -1.7 -2.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0784 -1.7 -3.4 hypothetical protein compare
Atu2379 -1.6 -6.3 phosphomannomutase compare
Atu4407 -1.6 -4.0 periplasmic nitrate reductase, NapD protein compare
Atu2264 -1.6 -7.8 2-isopropylmalate synthase compare
Atu4346 -1.6 -5.2 hypothetical protein compare
Atu1163 -1.6 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1844 -1.6 -3.8 Phosphoribosylformylglycinamidine synthetase compare
Atu0153 -1.6 -4.4 transcriptional regulator, Fur family compare
Atu2522 -1.6 -8.8 agrobacterium chromosomal virulence protein B compare
Atu4610 -1.5 -7.7 sugar nucleotide epimerase/dehydratase compare
Atu4614 -1.5 -7.1 glycosyltransferase compare
Atu4702 -1.5 -6.6 GntR family transcriptional regulator compare
Atu1705 -1.5 -3.9 SEC-independent protein translocase protein compare
Atu2791 -1.5 -5.7 3-isopropylmalate dehydrogenase compare
Atu0422 -1.5 -2.4 ABC transporter, membrane spanning protein compare
Atu3468 -1.5 -1.0 hypothetical protein compare
Atu6021 -1.5 -9.5 D-nopaline dehydrogenase compare
Atu1780 -1.5 -7.5 ATP-dependent DNA helicase compare
Atu1140 -1.5 -3.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1536 -1.5 -5.9 cytochrome C oxidase, FixO chain compare
Atu0101 -1.4 -3.3 cytochrome c compare
Atu0201 -1.4 -2.1 hypothetical protein compare
Atu0486 -1.4 -4.1 dihydroorotate dehydrogenase compare
Atu4618 -1.4 -7.9 dTDP-rhamnose-3,5-epimerase compare
Atu1103 -1.4 -2.9 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2052 -1.4 -6.1 hypothetical protein compare
Atu1810 -1.4 -1.4 hypothetical protein compare
Atu1030 -1.4 -0.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1537 -1.4 -7.0 cytochrome-c oxidase, FixN chain compare
Atu4617 -1.4 -8.4 dTDP-D-glucose-4,6-dehydratase compare
Atu1075 -1.3 -6.2 amidophosphoribosyltransferase compare
Atu1535 -1.3 -3.8 cytochrome c oxidase, FixQ chain compare
Atu0641 -1.3 -3.3 hypothetical protein compare
Atu6019 -1.3 -9.6 D-nopaline dehydrogenase compare
Atu2790 -1.3 -1.1 3-isopropylmalate dehydratase, small subunit compare
Atu0976 -1.3 -2.5 cycL protein compare
Atu3598 -1.3 -1.9 thiol:disulfide interchange protein compare
Atu1074 -1.3 -7.3 NAD/NADP dependent oxidoreductase compare
Atu1602 -1.3 -4.9 transcriptional activator, Crp family compare
Atu2464 -1.3 -2.7 formyltetrahydrofolate deformylase compare
Atu2001 -1.3 -5.8 excinuclease ABC subunit B compare
Atu0421 -1.3 -1.5 ABC transporter, membrane spanning protein compare
Atu0690 -1.3 -1.6 hypothetical protein compare
Atu6131 -1.3 -4.9 TraR Antiactivator compare
Atu1530 -1.3 -6.9 nitrogen fixation protein FixG compare
Atu6189 -1.3 -1.7 protein secretion chaperone compare
Atu1422 -1.2 -5.9 transcriptional regulator, MarR family compare
Atu3963 -1.2 -5.5 GntR family transcriptional regulator compare
Atu8138 -1.2 -1.7 hypothetical protein compare
Atu1647 -1.2 -5.7 ABC transporter, membrane spanning protein compare
Atu1219 -1.2 -0.9 hypothetical protein compare
Atu0973 -1.2 -5.3 cycH protein compare
Atu0161 -1.2 -7.2 biopolymer transport protein compare
Atu3299 -1.2 -2.8 hypothetical protein compare
Atu0029 -1.2 -4.6 S-adenosylhomocysteine hydrolase compare
Atu4613 -1.2 -8.0 glycosyltransferase compare
Atu3971 -1.2 -7.1 dihydroxy-acid dehydratase compare
Atu4217 -1.2 -1.4 TetR family transcriptional regulator compare
Atu0205 -1.1 -7.3 methylmalonate-semialdehyde dehydrogenase compare
Atu2207 -1.1 -3.9 two component sensor kinase compare
Atu4072 -1.1 -1.6 nodulation protein N compare
Atu3688 -1.1 -2.9 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu2592 -1.1 -4.5 hypothetical protein compare
Atu1534 -1.1 -5.5 cytochrome-c oxidase, FixP chain compare
Atu4615 -1.1 -6.6 glucose-1-phosphate thymidylyltransferase compare
Atu1528 -1.1 -8.9 nitrogen fixation protein FixI compare
Atu1644 -1.1 -2.7 hypothetical protein compare
Atu0142 -1.1 -1.7 cytochrome o ubiquinol oxidase subunit II compare
Atu2532 -1.1 -2.5 transcriptional regulator, MarR family compare
Atu0544 -1.1 -1.9 hypothetical protein compare
Atu3219 -1.1 -6.6 dihydroxy-acid dehydratase compare
Atu1518 -1.1 -3.8 transcriptional regulator, Fur family compare
Atu1470 -1.1 -1.0 Camphor resistance protein compare
Atu0099 -1.1 -5.9 prephenate dehydratase compare
Atu0036 -1.1 -2.3 hypothetical protein compare
Atu1308 -1.1 -3.6 aspartate carbamoyl transferase catalytic subunit compare
Atu0280 -1.0 -2.2 hypothetical protein compare
Atu3911 -1.0 -1.8 hypothetical protein compare
Atu2709 -1.0 -7.5 3-isopropylmalate dehydratase, large subunit compare
Atu8052 -1.0 -1.6 hypothetical protein compare
Atu1307 -1.0 -3.1 dihydroorotase compare
Atu6114 -1.0 -1.8 hypothetical protein compare
Atu0923 -1.0 -4.8 hypothetical protein compare
Atu4609 -1.0 -7.3 glycosyltransferase compare
Atu3663 -1.0 -0.6 hypothetical protein compare
Atu6020 -1.0 -4.0 conserved hypothetical protein compare
Atu0184 -1.0 -2.7 glucokinase compare
Atu0703 -1.0 -2.1 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2184 -1.0 -3.0 transcriptional regulator, AsnC family compare
Atu1529 -1.0 -5.1 nitrogen fixation protein FixH compare
Atu5125 -1.0 -4.0 GntR family transcriptional regulator compare
Atu0298 -1.0 -4.7 orotidine 5 compare
Atu2797 -1.0 -2.5 cobalamin biosynthesis protein compare
Atu1677 -1.0 -2.8 queuine tRNA-ribosyltransferase compare
Atu0978 -1.0 -5.1 two component response regulator compare
Atu0499 -1.0 -4.8 hypothetical protein compare
Atu0050 -1.0 -3.0 two component response regulator compare
Atu2590 -1.0 -4.0 hypothetical protein compare
Atu3730 -1.0 -1.1 hypothetical protein compare
Atu2376 -1.0 -2.5 hypothetical protein compare
Atu1620 -1.0 -5.7 triosephosphate isomerase compare
Atu0566 -1.0 -1.6 hypothetical protein compare
Atu3115 -1.0 -2.9 TetR family transcriptional regulator compare
Atu0163 -0.9 -4.1 tonB protein compare
Atu0361 -0.9 -2.3 transcriptional regulator compare
Atu0400 -0.9 -3.5 orotate phosphoribosyltransferase compare
Atu1173 -0.9 -5.1 MFS permease compare
Atu5464 -0.9 -5.0 IclR family transcriptional regulator compare
Atu2801 -0.9 -3.3 precorrin-2 C20 methyltransferase compare
Atu1110 -0.9 -2.4 cytosol aminopeptidase compare
Atu0533 -0.9 -1.4 putative inhibitor of septum formation compare
Atu4502 -0.9 -3.2 cobalamin synthesis protein compare
Atu1099 -0.9 -3.0 hypothetical protein compare
Atu4608 -0.9 -5.7 hypothetical protein compare
Atu3689 -0.9 -5.9 iron(III ABC transporter permease dicitrate ABC transporter permease compare
Atu5451 -0.9 -1.2 hypothetical protein compare
Atu1645 -0.9 -4.7 ABC transporter, substrate binding protein compare
Atu2585 -0.9 -3.9 hypothetical protein compare
Atu2800 -0.9 -1.5 precorrin-3B C17-methyltransferase compare
Atu1327 -0.9 -2.3 NADH-ubiquinone oxidoreductase compare
Atu2730 -0.9 -5.9 beta (1-->2) glucan biosynthesis protein compare


Specific Phenotypes

For 6 genes in this experiment

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days in Agrobacterium fabrum C58

For in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days across organisms