Experiment set6IT024 for Paraburkholderia bryophila 376MFSha3.1

Compare to:

4-Methyl-2-oxopentanoic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
H281DRAFT_04391 +1.4 11.9 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_01347 +1.2 4.4 transcriptional regulator, TetR family compare
H281DRAFT_04390 +1.2 9.0 ATP-binding cassette, subfamily B compare
H281DRAFT_01021 +1.1 2.6 Nitroreductase compare
H281DRAFT_01237 +1.0 1.6 DnaJ-class molecular chaperone with C-terminal Zn finger domain compare
H281DRAFT_04773 +0.9 3.1 Undecaprenyl-phosphate glucose phosphotransferase compare
H281DRAFT_04787 +0.9 2.8 polysaccharide transporter, PST family compare
H281DRAFT_05468 +0.9 1.7 Transposase Tn5 dimerisation domain-containing protein compare
H281DRAFT_02600 +0.9 2.1 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
H281DRAFT_01088 +0.8 2.2 Lactate dehydrogenase compare
H281DRAFT_04781 +0.8 1.9 putative colanic acid biosynthesis acetyltransferase WcaF compare
H281DRAFT_02614 +0.8 2.2 L-glutamine ABC transporter membrane protein compare
H281DRAFT_04878 +0.8 2.7 transcriptional regulator, ArsR family compare
H281DRAFT_02643 +0.8 2.0 hypothetical protein compare
H281DRAFT_04904 +0.8 2.3 outer membrane transport energization protein ExbD compare
H281DRAFT_04880 +0.7 1.4 PRC-barrel domain-containing protein compare
H281DRAFT_04933 +0.7 2.0 Nitroreductase compare
H281DRAFT_01050 +0.7 3.3 maleylacetate reductase compare
H281DRAFT_02626 +0.7 2.3 hypothetical protein compare
H281DRAFT_04270 +0.7 4.5 L-glutamate-binding protein /L-aspartate-binding protein compare
H281DRAFT_00717 +0.7 1.7 HTH-type transcriptional regulator / antitoxin HigA compare
H281DRAFT_03844 +0.7 3.3 L-glutamine synthetase (EC 6.3.1.2) compare
H281DRAFT_00413 +0.7 3.0 Protein of unknown function (DUF2569) compare
H281DRAFT_05398 +0.7 2.1 hypothetical protein compare
H281DRAFT_05653 +0.7 2.5 hypothetical protein compare
H281DRAFT_01246 +0.7 1.4 hypothetical protein compare
H281DRAFT_01825 +0.7 2.8 Outer membrane protein (porin) compare
H281DRAFT_01668 +0.7 2.0 gamma-aminobutyrate:proton symporter, AAT family compare
H281DRAFT_05903 +0.7 1.9 osmotically inducible protein OsmC compare
H281DRAFT_02880 +0.6 3.3 chemotaxis protein methyltransferase CheR compare
H281DRAFT_05725 +0.6 5.4 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) compare
H281DRAFT_06478 +0.6 2.2 succinylornithine aminotransferase apoenzyme compare
H281DRAFT_03199 +0.6 3.1 flagellar transcriptional activator FlhD compare
H281DRAFT_01095 +0.6 2.4 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_04776 +0.6 1.8 GDPmannose 4,6-dehydratase compare
H281DRAFT_01028 +0.6 1.3 peptide/nickel transport system permease protein compare
H281DRAFT_05323 +0.6 1.1 hypothetical protein compare
H281DRAFT_04406 +0.6 2.3 putative RNA-binding protein, YhbY family compare
H281DRAFT_05892 +0.6 1.2 carbohydrate ABC transporter substrate-binding protein, CUT1 family compare
H281DRAFT_01115 +0.6 3.1 deoxynucleoside transporter, permease component 1 (from data) compare
H281DRAFT_01519 +0.6 2.5 fructuronate reductase compare
H281DRAFT_04755 +0.6 1.8 transcriptional regulator, LysR family compare
H281DRAFT_01210 +0.6 2.4 Protein of unknown function (DUF1488) compare
H281DRAFT_05265 +0.6 2.1 hypothetical protein compare
H281DRAFT_02580 +0.6 2.1 SnoaL-like domain-containing protein compare
H281DRAFT_05879 +0.6 2.1 DNA-binding transcriptional regulator, MarR family compare
H281DRAFT_02750 +0.6 2.5 hypothetical protein compare
H281DRAFT_00888 +0.6 2.3 phytoene synthase compare
H281DRAFT_00050 +0.6 1.1 Uncharacterized conserved protein, DUF1330 family compare
H281DRAFT_05123 +0.6 2.0 hypothetical protein compare
H281DRAFT_06197 +0.6 1.5 hypothetical protein compare
H281DRAFT_06157 +0.6 1.3 hypothetical protein compare
H281DRAFT_01632 +0.6 4.7 LuxR family transcriptional regulator, quorum-sensing transcription factor LasR compare
H281DRAFT_05269 +0.6 1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_05345 +0.6 1.5 Fur family transcriptional regulator, zinc uptake regulator compare
H281DRAFT_06427 +0.6 2.4 Molecular chaperone IbpA, HSP20 family compare
H281DRAFT_01005 +0.6 1.5 PilZ domain-containing protein compare
H281DRAFT_00723 +0.6 2.7 beta-mannosidase compare
H281DRAFT_01257 +0.6 1.7 Catechol 2,3-dioxygenase compare
H281DRAFT_05157 +0.6 1.5 allantoin racemase compare
H281DRAFT_06078 +0.6 2.1 protein of unknown function (DUF4148) compare
H281DRAFT_06070 +0.6 1.7 FimV C-terminal domain-containing protein compare
H281DRAFT_03915 +0.5 2.1 UDPglucose 6-dehydrogenase compare
H281DRAFT_06003 +0.5 1.6 Pimeloyl-ACP methyl ester carboxylesterase compare
H281DRAFT_06114 +0.5 1.8 Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family compare
H281DRAFT_01442 +0.5 1.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
H281DRAFT_00254 +0.5 4.5 DNA (cytosine-5)-methyltransferase 1 compare
H281DRAFT_03784 +0.5 1.8 protein phosphatase compare
H281DRAFT_02183 +0.5 1.6 carbon-monoxide dehydrogenase medium subunit compare
H281DRAFT_03803 +0.5 2.8 alcohol dehydrogenase compare
H281DRAFT_01414 +0.5 1.5 hypothetical protein compare
H281DRAFT_05961 +0.5 1.2 D-3-phosphoglycerate dehydrogenase compare
H281DRAFT_05221 +0.5 1.4 Saccharopine dehydrogenase, NADP-dependent compare
H281DRAFT_02912 +0.5 1.7 Glycine zipper compare
H281DRAFT_00722 +0.5 1.2 transcriptional regulator, Crp/Fnr family compare
H281DRAFT_04544 +0.5 1.7 diacylglycerol kinase (ATP) compare
H281DRAFT_00376 +0.5 1.7 transcriptional regulator, TetR family compare
H281DRAFT_03860 +0.5 1.2 hypothetical protein compare
H281DRAFT_01377 +0.5 1.2 hypothetical protein compare
H281DRAFT_01382 +0.5 1.3 Cellulose biosynthesis protein BcsR compare
H281DRAFT_01678 +0.5 1.5 Predicted dehydrogenase compare
H281DRAFT_06354 +0.5 2.1 Sugar phosphate permease compare
H281DRAFT_06521 +0.5 1.5 magnesium chelatase subunit ChlD-like protein compare
H281DRAFT_03749 +0.5 1.2 carbohydrate ABC transporter ATP-binding protein, CUT1 family compare
H281DRAFT_01644 +0.5 1.4 muconolactone delta-isomerase compare
H281DRAFT_02007 +0.5 4.0 phosphoenolpyruvate--protein phosphotransferase compare
H281DRAFT_00603 +0.5 1.7 ZipA, C-terminal FtsZ-binding domain compare
H281DRAFT_05816 +0.5 4.1 soluble lytic murein transglycosylase compare
H281DRAFT_04932 +0.5 2.2 MbtH protein compare
H281DRAFT_01711 +0.5 2.2 Na/Pi-cotransporter compare
H281DRAFT_01262 +0.5 1.3 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_06375 +0.5 1.4 hypothetical protein compare
H281DRAFT_00695 +0.5 2.3 choline-sulfatase compare
H281DRAFT_04889 +0.5 1.4 hypothetical protein compare
H281DRAFT_02178 +0.5 2.4 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
H281DRAFT_00706 +0.5 1.0 outer membrane protein compare
H281DRAFT_05810 +0.5 2.7 Uncharacterized membrane protein compare
H281DRAFT_03870 +0.5 2.2 hypothetical protein compare
H281DRAFT_02962 +0.5 2.0 transcriptional regulator, TetR family compare
H281DRAFT_03659 +0.5 2.2 amino acid ABC transporter substrate-binding protein, PAAT family compare
H281DRAFT_05382 +0.5 1.9 diguanylate cyclase (GGDEF) domain-containing protein compare
H281DRAFT_00885 +0.5 2.0 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ compare
H281DRAFT_04093 +0.5 1.3 peptide/nickel transport system permease protein compare
H281DRAFT_02349 +0.5 2.0 general secretion pathway protein J compare
H281DRAFT_01081 +0.5 2.3 L-glutamine synthetase compare
H281DRAFT_01742 +0.5 2.5 putative oxidoreductase compare
H281DRAFT_03838 +0.5 1.3 hypothetical protein compare
H281DRAFT_04433 +0.5 1.7 Undecaprenyl-diphosphatase compare
H281DRAFT_03985 +0.5 2.6 Beta-ketoacyl synthase, N-terminal domain compare
H281DRAFT_06282 +0.5 2.8 [LSU ribosomal protein L11P]-lysine N-methyltransferase compare
H281DRAFT_00773 +0.5 1.9 nodulation factor export ABC transporter ATP-binding protein NodI compare
H281DRAFT_04984 +0.5 1.7 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) compare
H281DRAFT_04946 +0.5 1.2 putative spermidine/putrescine transport system ATP-binding protein compare
H281DRAFT_02741 +0.5 1.5 Enoyl-CoA hydratase/carnithine racemase compare
H281DRAFT_01633 +0.5 2.1 hypothetical protein compare
H281DRAFT_01236 +0.5 2.4 Protein-tyrosine-phosphatase compare
H281DRAFT_00690 +0.5 1.1 NADPH:quinone reductase compare
H281DRAFT_00298 +0.5 1.2 hypothetical protein compare
H281DRAFT_04269 +0.5 3.6 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_01049 +0.5 1.2 Nucleoside-diphosphate-sugar epimerase compare
H281DRAFT_01321 +0.5 1.7 probable H4MPT-linked C1 transfer pathway protein compare
H281DRAFT_04268 +0.5 3.4 L-glutamate ABC transporter membrane protein /L-aspartate ABC transporter membrane protein compare
H281DRAFT_06180 +0.5 1.8 hypothetical protein compare
H281DRAFT_04145 +0.5 2.6 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00470 +0.5 3.2 murein-DD-endopeptidase. Serine peptidase. MEROPS family S11 compare
H281DRAFT_01193 +0.5 1.7 4-hydroxyproline epimerase compare
H281DRAFT_05753 +0.5 2.9 flagellar biosynthesis protein FlhA compare
H281DRAFT_01443 +0.5 1.0 RND family efflux transporter, MFP subunit compare
H281DRAFT_05776 +0.5 2.6 flagellar biosynthetic protein FliP compare
H281DRAFT_00927 +0.5 2.5 UPF0755 protein compare
H281DRAFT_00152 +0.5 1.0 Protein of unknown function (DUF3460) compare
H281DRAFT_05407 +0.5 2.0 putative spermidine/putrescine transport system permease protein compare
H281DRAFT_04778 +0.5 2.4 Glycosyltransferase involved in cell wall bisynthesis compare
H281DRAFT_05392 +0.5 3.0 hypothetical protein compare
H281DRAFT_04846 +0.5 2.0 Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) compare
H281DRAFT_01680 +0.5 1.9 Crotonobetainyl-CoA:carnitine CoA-transferase CaiB compare
H281DRAFT_01383 +0.5 2.3 chromosome partitioning protein compare
H281DRAFT_01612 +0.5 2.6 2OG-Fe(II) oxygenase superfamily protein compare
H281DRAFT_03764 +0.5 1.1 ribulose-bisphosphate carboxylase large chain compare
H281DRAFT_06573 +0.5 2.1 putative addiction module antidote protein, CC2985 family compare
H281DRAFT_02503 +0.4 1.9 Peroxiredoxin compare
H281DRAFT_03126 +0.4 2.9 oligopeptide transport system ATP-binding protein compare
H281DRAFT_00281 +0.4 1.4 Spermidine synthase compare
H281DRAFT_05632 +0.4 1.8 hypothetical protein compare
H281DRAFT_03147 +0.4 1.1 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA compare
H281DRAFT_02443 +0.4 1.0 alkylhydroperoxidase AhpD family core domain-containing protein compare
H281DRAFT_00345 +0.4 1.8 Transglutaminase-like enzyme, putative cysteine protease compare
H281DRAFT_01125 +0.4 0.9 protein of unknown function (DUF2760) compare
H281DRAFT_05873 +0.4 1.3 amino acid ABC transporter ATP-binding protein, PAAT family compare
H281DRAFT_05192 +0.4 1.3 phage shock protein A (PspA) family protein compare
H281DRAFT_02656 +0.4 2.5 Glyoxylase, beta-lactamase superfamily II compare
H281DRAFT_06108 +0.4 1.3 hypothetical protein compare
H281DRAFT_00074 +0.4 1.5 UDP-galactose 4-epimerase compare
H281DRAFT_04584 +0.4 1.8 transcriptional regulator, AlpA family compare
H281DRAFT_06422 +0.4 1.1 hypothetical protein compare
H281DRAFT_02478 +0.4 1.9 formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
H281DRAFT_00875 +0.4 2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
H281DRAFT_03384 +0.4 1.0 Cytochrome c, mono- and diheme variants compare
H281DRAFT_01207 +0.4 1.3 SPFH domain, Band 7 family protein compare
H281DRAFT_03748 +0.4 1.4 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family compare
H281DRAFT_00240 +0.4 2.7 two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family compare
H281DRAFT_01269 +0.4 1.9 DNA-binding transcriptional regulator, LysR family compare
H281DRAFT_00528 +0.4 1.5 hypothetical protein compare
H281DRAFT_01441 +0.4 0.9 two component heavy metal response transcriptional regulator, winged helix family compare
H281DRAFT_02700 +0.4 1.7 feruloyl esterase compare
H281DRAFT_04467 +0.4 2.5 UDP-glucose pyrophosphorylase compare
H281DRAFT_05928 +0.4 0.9 hypothetical protein compare
H281DRAFT_02579 +0.4 1.5 maleylacetate reductase compare
H281DRAFT_01931 +0.4 1.9 UPF0042 nucleotide-binding protein compare
H281DRAFT_06021 +0.4 1.7 NADH dehydrogenase compare
H281DRAFT_03130 +0.4 1.1 transcriptional regulator, XRE family with cupin sensor compare
H281DRAFT_06089 +0.4 1.3 hypothetical protein compare
H281DRAFT_00543 +0.4 1.8 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) compare
H281DRAFT_06177 +0.4 2.2 hypothetical protein compare
H281DRAFT_03822 +0.4 1.4 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
H281DRAFT_04899 +0.4 1.0 microcin C transport system ATP-binding protein compare
H281DRAFT_01232 +0.4 1.8 Predicted arabinose efflux permease, MFS family compare
H281DRAFT_06188 +0.4 1.4 Site-specific recombinase XerD compare
H281DRAFT_03515 +0.4 1.9 polyhydroxyalkanoate depolymerase, intracellular compare
H281DRAFT_03396 +0.4 1.0 AraC-type DNA-binding protein compare
H281DRAFT_02718 +0.4 1.1 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_01412 +0.4 1.1 Superinfection immunity protein compare
H281DRAFT_00579 +0.4 1.8 Nucleotide-binding universal stress protein, UspA family compare
H281DRAFT_05943 +0.4 0.9 Permease of the drug/metabolite transporter (DMT) superfamily compare
H281DRAFT_06028 +0.4 1.7 hypothetical protein compare
H281DRAFT_00426 +0.4 1.4 monosaccharide ABC transporter ATP-binding protein, CUT2 family compare
H281DRAFT_06514 +0.4 1.0 Glycine/D-amino acid oxidase (deaminating) compare
H281DRAFT_04051 +0.4 0.6 transcriptional regulator, RpiR family compare
H281DRAFT_00313 +0.4 1.7 hypothetical protein compare
H281DRAFT_06494 +0.4 1.0 transcriptional regulator, IclR family compare
H281DRAFT_02751 +0.4 1.9 carboxylesterase compare
H281DRAFT_06006 +0.4 2.4 MEKHLA domain-containing protein compare
H281DRAFT_02764 +0.4 1.3 hypothetical protein compare
H281DRAFT_05045 +0.4 2.2 amidase compare
H281DRAFT_00895 +0.4 1.5 trigger factor compare
H281DRAFT_00067 +0.4 1.5 transposase, IS4 family compare
H281DRAFT_05278 +0.4 1.4 malonate decarboxylase gamma subunit compare
H281DRAFT_03801 +0.4 1.6 two component transcriptional regulator, winged helix family compare
H281DRAFT_02575 +0.4 1.6 D-threo-aldose 1-dehydrogenase compare
H281DRAFT_05341 +0.4 1.6 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source 4-Methyl-2-oxovaleric acid in Paraburkholderia bryophila 376MFSha3.1

For carbon source 4-Methyl-2-oxovaleric acid across organisms