Experiment set6H5 for Shewanella oneidensis MR-1

Compare to:

LB with Cholin acetate 20 mM

200 most detrimental genes:

  gene name fitness t score description  
SO4490 +1.3 3.7 hypothetical protein (NCBI ptt file) compare
SOA0171 +0.9 3.8 hypothetical protein (NCBI ptt file) compare
SO1295 +0.8 4.0 major outer membrane lipoprotein, putative (NCBI ptt file) compare
SO3169 +0.8 2.0 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO2113 +0.8 6.9 conserved hypothetical protein (NCBI ptt file) compare
SO2510 +0.8 1.7 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO2114 +0.7 4.8 conserved hypothetical protein (NCBI ptt file) compare
SO2762 +0.7 2.8 nagD protein (NCBI ptt file) compare
SO0562 +0.7 1.4 hypothetical protein (NCBI ptt file) compare
SOA0172 +0.7 5.1 site-specific recombinase, resolvase family (NCBI ptt file) compare
SO2727 +0.7 1.8 cytochrome c3 (NCBI ptt file) compare
SO2381 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
SO2986 +0.6 1.5 hypothetical protein (NCBI ptt file) compare
SO1476 smpA +0.6 1.4 small protein A (NCBI ptt file) compare
SO3648 +0.6 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO4687 ugd +0.6 4.9 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
SO3062 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
SO0299 +0.6 1.8 conserved hypothetical protein TIGR00252 (NCBI ptt file) compare
SOA0014 +0.6 2.7 hypothetical protein (NCBI ptt file) compare
SO4126 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
SO2773 +0.6 1.2 hypothetical protein (NCBI ptt file) compare
SO0662 +0.6 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3819.3 +0.6 2.8 hypothetical ammonia permease (NCBI ptt file) compare
SO0664 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
SO1062 def-2 +0.6 1.1 polypeptide deformylase (NCBI ptt file) compare
SO0217 tufB +0.6 1.1 translation elongation factor Tu (NCBI ptt file) compare
SO1832 ppiC-2 +0.6 1.5 peptidyl-prolyl cis-trans isomerase C (NCBI ptt file) compare
SO0701 +0.6 4.1 transcriptional regulator, LysR family (NCBI ptt file) compare
SO2159 +0.6 1.7 TonB domain protein (NCBI ptt file) compare
SO3085 +0.6 2.2 conserved domain protein (NCBI ptt file) compare
SO1817 +0.5 1.7 primosomal replication protein n'', putative (NCBI ptt file) compare
SO1400 +0.5 3.0 conserved hypothetical protein (NCBI ptt file) compare
SO0428 +0.5 4.8 conserved hypothetical protein (NCBI ptt file) compare
SO2736 +0.5 4.4 conserved hypothetical protein (NCBI ptt file) compare
SO0543 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
SO1166 +0.5 2.4 membrane-bound lytic transglycosylase, putative (NCBI ptt file) compare
SO3147 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
SO_2754 +0.5 1.7 no description compare
SO2983 +0.5 2.7 hypothetical protein (NCBI ptt file) compare
SO3851 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
SO0216 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
SO3320 +0.5 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO2441 thiG +0.5 2.3 thiG protein (NCBI ptt file) compare
SO2987 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
SO_A0111 +0.5 0.8 no description compare
SO1587 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO_3457 +0.5 4.2 hybrid sensory histidine kinase BarA (RefSeq) compare
SO_A0174 +0.5 1.7 hypothetical protein (NCBI) compare
SO2846 +0.5 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO2676 +0.5 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO0514 +0.5 2.2 hypothetical protein (NCBI ptt file) compare
SOA0002 +0.5 4.6 type II restriction-modification system activator, putative (NCBI ptt file) compare
SOA0005 +0.5 3.2 hypothetical protein (NCBI ptt file) compare
SOA0003 +0.5 4.5 type II restriction endonuclease, putative (NCBI ptt file) compare
SO0411 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO2838 +0.5 0.7 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) compare
SO2190 creA +0.5 1.4 creA protein (NCBI ptt file) compare
SO3192 +0.5 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO1858 +0.5 2.1 hypothetical protein (NCBI ptt file) compare
SO3229 fliE +0.4 1.3 flagellar hook-basal body complex protein FliE (NCBI ptt file) compare
SO0305 +0.4 2.1 hypothetical protein (NCBI ptt file) compare
SO1050 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
SO4428 +0.4 2.6 DNA-binding response regulator (NCBI ptt file) compare
SO_A0007 +0.4 3.3 hypothetical protein (NCBI) compare
SO_A0009 +0.4 3.1 hypothetical protein (NCBI) compare
SO1298.3 +0.4 1.2 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO4686 +0.4 3.0 NAD dependent epimerase/dehydratase family protein (NCBI ptt file) compare
SO1487 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO3708 +0.4 0.9 membrane protein, putative (NCBI ptt file) compare
SO0516 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
SOA0012 umuC +0.4 3.3 umuC protein (NCBI ptt file) compare
SO2921 folX +0.4 1.4 D-erythro-7,8-dihydroneopterin triphosphate epimerase (NCBI ptt file) compare
SO1860 +0.4 2.7 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SOA0004 +0.4 3.2 type II DNA modification methyltransferase (NCBI ptt file) compare
SO1329 +0.4 2.8 adenylate cyclase-related protein (NCBI ptt file) compare
SO1152 +0.4 0.7 hypothetical protein (NCBI ptt file) compare
SO4688 +0.4 3.4 glycosyl transferase, group 2 family protein (NCBI ptt file) compare
SO2687 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO2474 +0.4 0.8 carbonic anhydrase family protein (NCBI ptt file) compare
SO3108 +0.4 1.1 siroheme synthase, N-terminal component, putative (NCBI ptt file) compare
SO3002 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO2435 +0.4 1.8 methyltransferase, putative (NCBI ptt file) compare
SO0635 ppiC-1 +0.4 1.8 peptidyl-prolyl cis-trans isomerase C (NCBI ptt file) compare
SO4013 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO0340 ilvE +0.4 2.0 branched-chain amino acid aminotransferase (NCBI ptt file) compare
SO2470 +0.4 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO1378 +0.4 1.1 ThiJ/PfpI family protein (NCBI ptt file) compare
SO3191 +0.4 2.4 chain length determinant protein (NCBI ptt file) compare
SO1552.2 +0.4 2.3 hypothetical protease with the C-terminal PDZ domain (NCBI ptt file) compare
SO1382 +0.4 2.0 hypothetical protein (NCBI ptt file) compare
SO4409 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO1664 galE +0.4 3.0 UDP-glucose 4-epimerase (NCBI ptt file) compare
SO2562 +0.4 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO0464 +0.4 1.5 MutT/nudix family protein (NCBI ptt file) compare
SO0775 +0.4 1.5 conserved hypothetical protein (NCBI ptt file) compare
SOA0013 umuD +0.4 2.9 umuD protein (VIMSS) compare
SO1813 +0.4 1.7 DNA-binding protein, putative (NCBI ptt file) compare
SO3087 +0.4 0.7 conserved hypothetical protein (NCBI ptt file) compare
SO3245 flgF +0.4 2.2 flagellar basal-body rod protein FlgF (NCBI ptt file) compare
SOA0008 +0.4 2.7 hypothetical protein (NCBI ptt file) compare
SO3704 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
SO_1773 +0.4 0.8 no description compare
SO3089 +0.4 2.0 fatty oxidation complex, beta subunit (NCBI ptt file) compare
SO2735 +0.4 3.1 hypothetical protein (NCBI ptt file) compare
SO2772 +0.4 1.8 cytosolic long-chain acyl-CoA thioester hydrolase family protein (NCBI ptt file) compare
SO_A0006 +0.4 2.8 ParA family protein (NCBI) compare
SO1570 +0.4 3.0 GGDEF domain protein (NCBI ptt file) compare
SO3979 +0.4 1.5 conserved domain protein (NCBI ptt file) compare
SO2830 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO3657 +0.4 1.4 transporter, LysE family (NCBI ptt file) compare
SO2514 nth +0.4 1.3 endonuclease III (NCBI ptt file) compare
SO3491 +0.4 2.3 HDIG domain protein (NCBI ptt file) compare
SO0258.1 +0.4 1.2 putative transposase (NCBI ptt file) compare
SO3596 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO1808 pspB +0.3 0.9 phage shock protein B (NCBI ptt file) compare
SO2636 +0.3 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO4455 +0.3 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO0849 napD +0.3 1.6 napD protein (NCBI ptt file) compare
SO4599 +0.3 2.0 ribonuclease, T2 family (NCBI ptt file) compare
SO3931 +0.3 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO_t012 tRNA-Gly-1 +0.3 0.9 tRNA-Gly (RefSeq) compare
SO0926 +0.3 2.5 acetyltransferase, GNAT family (NCBI ptt file) compare
SO3293 guaB +0.3 1.7 inosine-5'-monophosphate dehydrogenase (NCBI ptt file) compare
SO4037 +0.3 2.3 hypothetical protein (NCBI ptt file) compare
SO3233 fliS +0.3 2.2 flagellar protein FliS (NCBI ptt file) compare
SO_2214 +0.3 1.6 no description compare
SO_2304 +0.3 1.9 no description compare
SOA0072 +0.3 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO1855 rmf +0.3 1.1 ribosome modulation factor (NCBI ptt file) compare
SOA0011 +0.3 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO1846 +0.3 1.2 hypothetical protein (NCBI ptt file) compare
SO4250 dut +0.3 2.1 deoxyuridine 5'-triphosphate nucleotidohydrolase (NCBI ptt file) compare
SO2642 +0.3 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO2467.1 +0.3 0.9 hypothetical UV repair DNA polymerase (NCBI ptt file) compare
SOA0010 +0.3 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO1352 acpS +0.3 1.0 holo-(acyl-carrier protein) synthase (NCBI ptt file) compare
SO2467 +0.3 1.2 adhesion-related protein (NCBI ptt file) compare
SO2911 +0.3 1.8 formate transporter, putative (NCBI ptt file) compare
SO0705 +0.3 0.5 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO3729 +0.3 1.3 hypothetical phospholipase A (NCBI ptt file) compare
SO3051 +0.3 1.9 hypothetical xanthine dehydrogenase accessory factor (NCBI ptt file) compare
SO4401 rbn +0.3 1.9 ribonuclease BN (NCBI ptt file) compare
SO_3141 +0.3 0.6 no description compare
SO4689 +0.3 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO2833 nrdG +0.3 1.7 anaerobic ribonucleoside-triphosphate reductase activating protein (NCBI ptt file) compare
SO2447 +0.3 1.7 channel protein, hemolysin III family subfamily (NCBI ptt file) compare
SO2914 +0.3 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO3692 +0.3 1.7 ABC transporter, ATP-binding protein (NCBI ptt file) compare
SO0552 +0.3 1.6 hypothetical protein (NCBI ptt file) compare
SO1922 +0.3 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO3210 fliA +0.3 1.8 RNA polymerase sigma-27 factor (NCBI ptt file) compare
SO3226 fliH +0.3 1.9 flagellar assembly protein FliH (NCBI ptt file) compare
SO1908 +0.3 1.4 hypothetical protein (NCBI ptt file) compare
SO3528 +0.3 1.6 hypothetical protein (NCBI ptt file) compare
SO4427 +0.3 1.8 sensor histidine kinase (NCBI ptt file) compare
SO1945 phoQ +0.3 1.8 sensor protein PhoQ (NCBI ptt file) compare
SO4185 +0.3 1.2 hypothetical protein (NCBI ptt file) compare
SO2177 +0.3 0.8 conserved hypothetical protein (NCBI ptt file) compare
SO2567 menG-1 +0.3 1.1 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) compare
SO4298 +0.3 2.2 cyclic nucleotide binding protein, putative (NCBI ptt file) compare
SO2518 +0.3 1.7 conserved domain protein (NCBI ptt file) compare
SO1758 +0.3 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO0767 +0.3 1.3 transcriptional regulator, LysR family (NCBI ptt file) compare
SO1247 +0.3 1.5 hypothetical protein (NCBI ptt file) compare
SO3033 +0.3 1.1 ferric alcaligin siderophore receptor (NCBI ptt file) compare
SO0556 +0.3 1.3 hypothetical protein (NCBI ptt file) compare
SO1742 +0.3 1.0 hypothetical 3-oxoacyl-acyl carrier protein synthase III (NCBI ptt file) compare
SO2815 +0.3 1.8 CBS domain protein (NCBI ptt file) compare
SO2115 +0.3 1.2 asparaginase family protein (NCBI ptt file) compare
SO3249 flgC +0.3 1.5 flagellar basal-body rod protein FlgC (NCBI ptt file) compare
SO0904 nqrC-1 +0.3 1.7 NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit (NCBI ptt file) compare
SO1662 +0.3 1.2 hypothetical Ccm2-related protein (NCBI ptt file) compare
SO2753.2 +0.3 1.1 hypothetical sodium-type flagellar protein MotY (NCBI ptt file) compare
SO0083 +0.3 1.5 carboxymuconolactone decarboxylase family protein (NCBI ptt file) compare
SO1713 +0.3 1.7 hypothetical protein (NCBI ptt file) compare
SO1910 +0.3 1.3 1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative (NCBI ptt file) compare
SO3755 +0.3 1.0 hypothetical protein (NCBI ptt file) compare
SO1414 +0.3 2.0 flavocytochrome c flavin subunit, putative (NCBI ptt file) compare
SO2208 +0.3 0.9 phosphotyrosine protein phosphatase (NCBI ptt file) compare
SO1503 +0.3 1.7 ABC transporter, periplasmic substrate-binding protein, putative (NCBI ptt file) compare
SO0400 +0.3 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO1891 +0.3 1.7 3-oxoadipate CoA-succinyl transferase, beta subunit (NCBI ptt file) compare
SO4044 +0.3 1.9 hypothetical protein (NCBI ptt file) compare
SO0198.1 +0.3 1.2 putative transposase (NCBI ptt file) compare
SO3242 flgI +0.3 1.7 flagellar P-ring protein FlgI (NCBI ptt file) compare
SO_1467 +0.3 1.3 no description compare
SO2494 +0.3 1.2 zinc-dependent metallopeptidase (NCBI ptt file) compare
SO4188 +0.3 1.2 hypothetical protein (NCBI ptt file) compare
SO1759 +0.3 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO0681 +0.3 1.6 hypothetical protein (NCBI ptt file) compare
SO1686 +0.3 1.7 prolyl oligopeptidase family protein (NCBI ptt file) compare
SO3383 +0.3 1.4 transcriptional regulator-related protein (NCBI ptt file) compare
SO2604 +0.3 0.8 conserved hypothetical protein (NCBI ptt file) compare
SO1916 +0.3 1.9 transcriptional regulator, LysR family (NCBI ptt file) compare
SO4322 +0.3 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO4159 +0.3 1.6 hypothetical protein (NCBI ptt file) compare
SO0999 pbpG +0.3 1.6 D-alanyl-D-alanine endopeptidase (NCBI ptt file) compare
SO3239 flgL +0.3 1.0 flagellar hook-associated protein FlgL (NCBI ptt file) compare
SO3737 cysI +0.3 1.5 sulfite reductase (NADPH) hemoprotein beta-component (cysI) (NCBI ptt file) compare
SO_3046 +0.3 1.6 no description compare


Specific Phenotypes

None in this experiment

For Shewanella oneidensis MR-1 in stress experiments

For stress Cholin acetate across organisms