Experiment set5S58 for Phocaeicola vulgatus CL09T03C04

Compare to:

diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day4

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS10230 +4.5 4.8 hypothetical protein compare
HMPREF1058_RS04545 +3.3 6.9 hypothetical protein compare
HMPREF1058_RS02145 +2.6 4.6 hypothetical protein compare
HMPREF1058_RS04580 +2.4 2.1 hypothetical protein compare
HMPREF1058_RS21575 +2.3 2.0 mobilization protein compare
HMPREF1058_RS15540 +2.3 3.7 YccF domain-containing protein compare
HMPREF1058_RS01205 +2.2 1.8 methyltransferase compare
HMPREF1058_RS09860 +2.2 2.2 DUF3408 domain-containing protein compare
HMPREF1058_RS21475 +2.2 1.7 smalltalk protein compare
HMPREF1058_RS06375 +2.2 2.0 glutaminase A compare
HMPREF1058_RS01075 +2.1 2.9 site-specific integrase compare
HMPREF1058_RS05250 +2.0 2.7 transposase compare
HMPREF1058_RS07445 +1.9 3.6 uracil-DNA glycosylase compare
HMPREF1058_RS13580 +1.8 12.5 response regulator compare
HMPREF1058_RS13545 +1.8 9.1 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS18890 +1.8 3.3 DUF3127 domain-containing protein compare
HMPREF1058_RS13540 +1.8 11.1 TonB-dependent receptor compare
HMPREF1058_RS03455 +1.7 2.2 hypothetical protein compare
HMPREF1058_RS17285 +1.7 4.2 glycosyltransferase compare
HMPREF1058_RS01705 +1.7 1.4 Na+/H+ antiporter NhaC family protein compare
HMPREF1058_RS08060 +1.7 3.8 hypothetical protein compare
HMPREF1058_RS16525 +1.7 1.6 hypothetical protein compare
HMPREF1058_RS17205 +1.6 2.0 DUF4199 domain-containing protein compare
HMPREF1058_RS01915 +1.6 2.8 hypothetical protein compare
HMPREF1058_RS09890 +1.6 1.0 DUF3876 domain-containing protein compare
HMPREF1058_RS12550 +1.6 1.9 rubredoxin compare
HMPREF1058_RS02260 +1.6 6.4 hypothetical protein compare
HMPREF1058_RS0119645 +1.6 4.2 AAA family ATPase compare
HMPREF1058_RS13030 +1.5 8.6 TonB-dependent receptor compare
HMPREF1058_RS07285 +1.5 7.1 ROK family transcriptional regulator compare
HMPREF1058_RS17405 +1.5 2.8 polysaccharide export protein compare
HMPREF1058_RS00515 +1.5 4.4 YicC family protein compare
HMPREF1058_RS18010 +1.5 2.7 L-asparaginase 2 compare
HMPREF1058_RS11220 +1.5 1.2 RNA methyltransferase compare
HMPREF1058_RS21545 +1.4 1.8 hypothetical protein compare
HMPREF1058_RS04150 +1.4 3.4 proline/glycine betaine ABC transporter permease compare
HMPREF1058_RS03940 +1.4 3.7 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS05190 +1.4 1.6 hypothetical protein compare
HMPREF1058_RS01235 +1.4 5.1 phosphoserine phosphatase SerB compare
HMPREF1058_RS12980 +1.4 2.0 hypothetical protein compare
HMPREF1058_RS00390 +1.4 2.5 ATP-binding cassette domain-containing protein compare
HMPREF1058_RS04585 +1.4 2.3 hypothetical protein compare
HMPREF1058_RS05185 +1.4 3.0 hypothetical protein compare
HMPREF1058_RS03485 +1.4 2.9 RloB domain-containing protein compare
HMPREF1058_RS07280 +1.4 4.7 HAD family hydrolase compare
HMPREF1058_RS11080 +1.3 2.9 ORF6N domain-containing protein compare
HMPREF1058_RS16485 +1.3 5.3 cyclomaltodextrinase C-terminal domain-containing protein compare
HMPREF1058_RS18380 +1.3 3.0 cobalamin-binding protein compare
HMPREF1058_RS04950 +1.3 1.0 hypothetical protein compare
HMPREF1058_RS01820 +1.3 1.5 hypothetical protein compare
HMPREF1058_RS07545 +1.3 1.2 hypothetical protein compare
HMPREF1058_RS04530 +1.3 1.0 hypothetical protein compare
HMPREF1058_RS12995 +1.3 2.2 hypothetical protein compare
HMPREF1058_RS03295 +1.2 1.1 sulfur carrier protein ThiS compare
HMPREF1058_RS04230 +1.2 2.7 pyridoxamine 5'-phosphate oxidase family protein compare
HMPREF1058_RS01930 +1.2 3.2 type II toxin-antitoxin system HigB family toxin compare
HMPREF1058_RS15280 +1.2 1.5 tRNA-Ser compare
HMPREF1058_RS21405 +1.2 0.7 hypothetical protein compare
HMPREF1058_RS01625 +1.2 1.6 hypothetical protein compare
HMPREF1058_RS0120135 +1.2 3.0 hypothetical protein compare
HMPREF1058_RS18510 +1.2 1.4 DNA-binding protein compare
HMPREF1058_RS0119485 +1.2 2.3 DUF1573 domain-containing protein compare
HMPREF1058_RS18870 +1.2 0.8 hypothetical protein compare
HMPREF1058_RS10190 +1.2 2.0 ParB/RepB/Spo0J family partition protein compare
HMPREF1058_RS18770 +1.2 1.0 hypothetical protein compare
HMPREF1058_RS12600 +1.1 3.3 hypothetical protein compare
HMPREF1058_RS01345 +1.1 2.8 recombinase family protein compare
HMPREF1058_RS17610 +1.1 1.7 DUF47 domain-containing protein compare
HMPREF1058_RS09985 +1.1 1.9 hypothetical protein compare
HMPREF1058_RS09940 +1.1 1.4 lysozyme compare
HMPREF1058_RS06265 +1.1 3.6 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS09060 +1.1 1.8 hypothetical protein compare
HMPREF1058_RS06805 +1.1 3.0 endonuclease/exonuclease/phosphatase family protein compare
HMPREF1058_RS0120025 +1.1 2.2 DUF975 family protein compare
HMPREF1058_RS14270 +1.1 3.6 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS17000 +1.0 2.3 DUF4251 domain-containing protein compare
HMPREF1058_RS05935 +1.0 3.6 bifunctional nuclease family protein compare
HMPREF1058_RS09910 +1.0 1.0 DUF3989 domain-containing protein compare
HMPREF1058_RS02005 +1.0 1.1 hypothetical protein compare
HMPREF1058_RS11400 +1.0 2.3 TatD family hydrolase compare
HMPREF1058_RS19220 +1.0 3.1 tape measure protein compare
HMPREF1058_RS21715 +1.0 2.9 hypothetical protein compare
HMPREF1058_RS13045 +1.0 0.9 hypothetical protein compare
HMPREF1058_RS21140 +1.0 0.9 ISAs1 family transposase compare
HMPREF1058_RS02320 +1.0 1.4 hypothetical protein compare
HMPREF1058_RS06060 +1.0 2.4 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS09765 +1.0 1.3 hypothetical protein compare
HMPREF1058_RS17275 +1.0 2.8 GDP-L-fucose synthase compare
HMPREF1058_RS06430 +1.0 1.2 C-GCAxxG-C-C family protein compare
HMPREF1058_RS04560 +1.0 1.7 hypothetical protein compare
HMPREF1058_RS05695 +1.0 1.5 helix-turn-helix domain-containing protein compare
HMPREF1058_RS04225 +1.0 2.4 helix-turn-helix transcriptional regulator compare
HMPREF1058_RS02765 +1.0 2.3 insulinase family protein compare
HMPREF1058_RS03135 +1.0 0.6 5S ribosomal RNA compare
HMPREF1058_RS09895 +1.0 1.7 DUF4141 domain-containing protein compare
HMPREF1058_RS05360 +1.0 1.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS11980 +0.9 1.2 hypothetical protein compare
HMPREF1058_RS01435 +0.9 3.3 anaerobic ribonucleoside-triphosphate reductase compare
HMPREF1058_RS15560 +0.9 2.0 DsbA family protein compare
HMPREF1058_RS05465 +0.9 1.2 DNA-binding protein compare
HMPREF1058_RS01535 +0.9 1.5 flavin reductase family protein compare
HMPREF1058_RS10420 +0.9 2.3 hypothetical protein compare
HMPREF1058_RS07735 +0.9 2.3 chloride channel protein compare
HMPREF1058_RS17665 +0.9 0.8 hypothetical protein compare
HMPREF1058_RS02335 +0.9 1.6 hypothetical protein compare
HMPREF1058_RS14320 +0.9 3.7 AAA family ATPase compare
HMPREF1058_RS09915 +0.9 1.5 conjugative transposon protein TraM compare
HMPREF1058_RS13695 +0.9 3.9 hypothetical protein compare
HMPREF1058_RS09975 +0.9 1.5 PcfJ family protein compare
HMPREF1058_RS08655 +0.9 2.3 Cof-type HAD-IIB family hydrolase compare
HMPREF1058_RS13785 +0.9 3.3 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS19020 +0.9 1.6 hypothetical protein compare
HMPREF1058_RS02530 +0.9 4.0 GxxExxY protein compare
HMPREF1058_RS15430 +0.9 4.6 aspartate-alanine antiporter compare
HMPREF1058_RS01475 +0.9 1.4 hypothetical protein compare
HMPREF1058_RS05345 +0.9 2.0 site-specific integrase compare
HMPREF1058_RS18150 +0.9 2.9 Fic family protein compare
HMPREF1058_RS06425 +0.9 1.2 winged helix-turn-helix domain-containing protein compare
HMPREF1058_RS12975 +0.9 3.5 hypothetical protein compare
HMPREF1058_RS18925 +0.9 2.4 DEAD/DEAH box helicase compare
HMPREF1058_RS04935 +0.9 2.7 site-specific integrase compare
HMPREF1058_RS21045 +0.9 1.9 hypothetical protein compare
HMPREF1058_RS18435 +0.9 2.8 transcriptional regulator compare
HMPREF1058_RS14340 +0.9 5.3 TonB-dependent receptor compare
HMPREF1058_RS18135 +0.9 3.8 hypothetical protein compare
HMPREF1058_RS14590 +0.9 1.4 AraC family transcriptional regulator compare
HMPREF1058_RS04555 +0.9 1.5 YqaJ viral recombinase family protein compare
HMPREF1058_RS14205 +0.9 3.9 6-phosphofructokinase compare
HMPREF1058_RS02550 +0.9 3.4 NUDIX domain-containing protein compare
HMPREF1058_RS00610 +0.8 2.1 DsbA family protein compare
HMPREF1058_RS15970 +0.8 1.6 thioredoxin-dependent thiol peroxidase compare
HMPREF1058_RS12065 +0.8 0.6 DUF4491 family protein compare
HMPREF1058_RS05355 +0.8 1.9 helix-turn-helix domain-containing protein compare
HMPREF1058_RS05965 +0.8 1.7 hypothetical protein compare
HMPREF1058_RS07165 +0.8 1.8 YtxH domain-containing protein compare
HMPREF1058_RS17540 +0.8 1.8 6-bladed beta-propeller compare
HMPREF1058_RS03435 +0.8 1.8 DNA-binding protein compare
HMPREF1058_RS17215 +0.8 4.1 DEAD/DEAH box helicase compare
HMPREF1058_RS06775 +0.8 2.1 class I SAM-dependent methyltransferase compare
HMPREF1058_RS15865 +0.8 2.3 PaaI family thioesterase compare
HMPREF1058_RS08710 +0.8 2.7 HU family DNA-binding protein compare
HMPREF1058_RS02475 +0.8 1.2 hypothetical protein compare
HMPREF1058_RS00505 +0.8 1.6 hypothetical protein compare
HMPREF1058_RS01880 +0.8 0.8 hypothetical protein compare
HMPREF1058_RS07185 +0.8 1.9 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS21085 +0.8 1.6 transposase compare
HMPREF1058_RS04740 +0.8 2.2 DUF5606 domain-containing protein compare
HMPREF1058_RS08340 +0.8 2.1 hypothetical protein compare
HMPREF1058_RS17345 +0.8 2.5 CatB-related O-acetyltransferase compare
HMPREF1058_RS13020 +0.8 1.9 hypothetical protein compare
HMPREF1058_RS10220 +0.8 1.8 hypothetical protein compare
HMPREF1058_RS14780 +0.8 3.9 exo-alpha-sialidase compare
HMPREF1058_RS17795 +0.8 2.9 potassium/proton antiporter compare
HMPREF1058_RS04805 +0.8 0.9 hypothetical protein compare
HMPREF1058_RS13495 +0.8 2.1 glycoside hydrolase family 43 protein compare
HMPREF1058_RS08305 +0.8 1.6 DJ-1/PfpI family protein compare
HMPREF1058_RS21725 +0.8 1.4 hypothetical protein compare
HMPREF1058_RS10585 +0.8 1.7 acyl carrier protein compare
HMPREF1058_RS05500 +0.8 1.6 helix-turn-helix domain-containing protein compare
HMPREF1058_RS02925 +0.8 1.9 peroxide stress protein YaaA compare
HMPREF1058_RS11190 +0.8 3.3 rubrerythrin family protein compare
HMPREF1058_RS03930 +0.8 2.3 ABC transporter permease compare
HMPREF1058_RS15440 +0.8 3.3 tetratricopeptide repeat protein compare
HMPREF1058_RS01480 +0.8 3.1 ribonucleoside-diphosphate reductase subunit alpha compare
HMPREF1058_RS11485 +0.8 1.6 ketopantoate reductase family protein compare
HMPREF1058_RS15705 +0.8 2.3 winged helix DNA-binding domain-containing protein compare
HMPREF1058_RS21590 +0.7 0.5 hypothetical protein compare
HMPREF1058_RS11520 +0.7 1.0 D-tyrosyl-tRNA(Tyr) deacylase compare
HMPREF1058_RS13690 +0.7 2.6 DUF5074 domain-containing protein compare
HMPREF1058_RS14290 +0.7 1.9 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS03505 +0.7 1.6 TIGR03905 family TSCPD domain-containing protein compare
HMPREF1058_RS09160 +0.7 1.9 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase compare
HMPREF1058_RS17290 +0.7 2.2 glycosyltransferase family 2 protein compare
HMPREF1058_RS02330 +0.7 2.5 peptidase C39 compare
HMPREF1058_RS16615 +0.7 3.3 DUF4857 domain-containing protein compare
HMPREF1058_RS15455 +0.7 1.7 TonB family protein compare
HMPREF1058_RS07000 +0.7 3.0 DNA/RNA non-specific endonuclease compare
HMPREF1058_RS15490 +0.7 2.5 SWIM zinc finger family protein compare
HMPREF1058_RS04135 +0.7 2.4 sugar O-acetyltransferase compare
HMPREF1058_RS13270 +0.7 2.2 GTP-binding protein compare
HMPREF1058_RS13160 +0.7 5.1 response regulator compare
HMPREF1058_RS05720 +0.7 1.5 hypothetical protein compare
HMPREF1058_RS04245 +0.7 2.9 hypothetical protein compare
HMPREF1058_RS14665 +0.7 2.4 type 1 glutamine amidotransferase domain-containing protein compare
HMPREF1058_RS04155 +0.7 2.5 glycine betaine/L-proline ABC transporter ATP-binding protein compare
HMPREF1058_RS17700 +0.7 1.2 chaperone modulator CbpM compare
HMPREF1058_RS12530 +0.7 2.1 hypothetical protein compare
HMPREF1058_RS11800 +0.7 2.6 carbohydrate kinase compare
HMPREF1058_RS04195 +0.7 1.5 chloramphenicol acetyltransferase compare
HMPREF1058_RS01115 +0.7 1.4 hypothetical protein compare
HMPREF1058_RS00755 +0.7 1.8 PorT family protein compare
HMPREF1058_RS06045 +0.7 2.2 large-conductance mechanosensitive channel protein MscL compare
HMPREF1058_RS10135 +0.7 0.9 hypothetical protein compare
HMPREF1058_RS17800 +0.7 2.1 MATE family efflux transporter compare
HMPREF1058_RS10590 +0.7 1.7 acyltransferase compare
HMPREF1058_RS12635 +0.7 1.6 DUF3784 domain-containing protein compare
HMPREF1058_RS11430 +0.7 1.6 flavin reductase compare
HMPREF1058_RS15425 +0.7 3.0 bifunctional aspartate transaminase/aspartate 4-decarboxylase compare
HMPREF1058_RS06215 +0.7 1.5 LysO family transporter compare
HMPREF1058_RS03230 +0.7 2.0 ABC transporter permease compare


Specific Phenotypes

For 15 genes in this experiment

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm in Phocaeicola vulgatus CL09T03C04

For mouse diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm across organisms