Experiment set5IT079 for Pantoea sp. MT58

Compare to:

Survival; Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_13685 -3.9 -2.9 Tol-Pal system protein TolB compare
IAI47_21880 -3.8 -1.0 ParA family protein compare
IAI47_07885 -3.7 -1.4 tRNA-Asn compare
IAI47_20600 -3.6 -2.8 hypothetical protein compare
IAI47_21450 -3.5 -1.3 general stress protein compare
IAI47_15595 -3.5 -2.0 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_13885 -3.5 -1.8 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_08085 -3.4 -7.1 helix-turn-helix domain-containing protein compare
IAI47_04705 -3.3 -1.5 hypothetical protein compare
IAI47_16390 -3.2 -0.8 tRNA-Leu compare
IAI47_13065 -3.2 -2.2 DUF1418 family protein compare
IAI47_00735 -3.1 -2.0 protein-export chaperone SecB compare
IAI47_05070 -3.0 -0.8 outer membrane protein assembly factor BamB compare
IAI47_00780 -3.0 -3.5 6-phosphofructokinase compare
IAI47_00515 -2.9 -2.6 DNA-directed RNA polymerase subunit omega compare
IAI47_09360 -2.9 -1.5 peptide ABC transporter ATP-binding protein SapF compare
IAI47_12920 -2.7 -4.5 thioredoxin-disulfide reductase compare
IAI47_09305 -2.7 -1.9 cyclic di-GMP phosphodiesterase compare
IAI47_13690 -2.7 -0.7 cell envelope integrity protein TolA compare
IAI47_13695 -2.7 -0.7 colicin uptake protein TolR compare
IAI47_09580 -2.6 -4.3 FNR family transcription factor compare
IAI47_00770 -2.6 -0.9 general stress protein compare
IAI47_08705 -2.5 -12.1 carboxy terminal-processing peptidase compare
IAI47_10320 -2.5 -0.9 Rrf2 family transcriptional regulator compare
IAI47_09235 -2.4 -1.2 type I DNA topoisomerase compare
IAI47_17020 -2.4 -2.3 30S ribosome-binding factor RbfA compare
IAI47_11360 -2.4 -3.4 hypothetical protein compare
IAI47_11830 -2.4 -6.6 muramoyltetrapeptide carboxypeptidase compare
IAI47_12925 -2.4 -3.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_09055 -2.3 -12.8 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_11475 -2.3 -1.2 hypothetical protein compare
IAI47_04300 -2.3 -7.4 recombinase RecA compare
IAI47_07930 -2.1 -1.4 DUF2158 domain-containing protein compare
IAI47_14940 -2.1 -2.6 YaiI/YqxD family protein compare
IAI47_17235 -2.1 -9.3 stringent starvation protein A compare
IAI47_02090 -2.1 -3.4 elongation factor Tu compare
IAI47_15970 -2.1 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_10470 -2.0 -2.1 electron transport complex subunit E compare
IAI47_11310 -2.0 -3.5 redox-regulated ATPase YchF compare
IAI47_08670 -2.0 -3.3 DUF1272 domain-containing protein compare
IAI47_08700 -2.0 -6.6 RNA chaperone ProQ compare
IAI47_10845 -2.0 -2.7 major outer membrane lipoprotein compare
IAI47_13925 -2.0 -1.8 tRNA-Met compare
IAI47_07010 -2.0 -1.8 ABC transporter permease compare
IAI47_07550 -2.0 -1.0 tRNA-Asn compare
IAI47_10520 -2.0 -2.7 pyridoxamine 5'-phosphate oxidase compare
IAI47_07475 -2.0 -1.2 hypothetical protein compare
IAI47_04800 -1.9 -1.0 RnfH family protein compare
IAI47_12470 -1.9 -10.0 UvrY/SirA/GacA family response regulator transcription factor compare
IAI47_18145 -1.9 -2.0 elongation factor Tu compare
IAI47_14325 -1.8 -1.7 ribosome-associated protein YbcJ compare
IAI47_03375 -1.8 -8.8 peptide chain release factor 3 compare
IAI47_05425 -1.8 -4.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_05155 -1.8 -10.9 polyphosphate kinase 1 compare
IAI47_15485 -1.8 -1.3 molecular chaperone Skp compare
IAI47_13050 -1.8 -2.6 YbjN domain-containing protein compare
IAI47_12545 -1.7 -1.6 general stress protein compare
IAI47_17900 -1.7 -1.4 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_07775 -1.7 -2.8 phosphonate C-P lyase system protein PhnK compare
IAI47_12885 -1.7 -6.3 pyruvate formate lyase 1-activating protein compare
IAI47_20705 -1.7 -1.0 sulfur carrier protein ThiS compare
IAI47_00925 -1.7 -2.7 hypothetical protein compare
IAI47_16420 -1.7 -8.0 LacI family DNA-binding transcriptional regulator compare
IAI47_10775 -1.7 -4.2 ribonuclease T compare
IAI47_06320 -1.6 -6.6 phosphate acetyltransferase compare
IAI47_12880 -1.6 -9.5 formate C-acetyltransferase compare
IAI47_15635 -1.6 -1.7 RNA polymerase-binding protein DksA compare
IAI47_14470 -1.6 -1.9 YbaB/EbfC family nucleoid-associated protein compare
IAI47_18470 -1.6 -9.3 ECA oligosaccharide polymerase compare
IAI47_15120 -1.6 -5.4 glutamate 5-kinase compare
IAI47_14945 -1.6 -3.0 pyrroline-5-carboxylate reductase compare
IAI47_18830 -1.6 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_07450 -1.6 -2.2 winged helix-turn-helix domain-containing protein compare
IAI47_03725 -1.6 -5.5 phosphoglycerate dehydrogenase compare
IAI47_12275 -1.5 -10.2 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_05050 -1.5 -4.0 cytoskeleton protein RodZ compare
IAI47_06135 -1.5 -3.6 phosphohistidine phosphatase SixA compare
IAI47_18520 -1.5 -8.6 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_13935 -1.5 -1.0 tRNA-Gln compare
IAI47_10945 -1.5 -3.4 vitamin B12 ABC transporter permease BtuC compare
IAI47_12930 -1.5 -2.9 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI47_06325 -1.5 -5.6 acetate kinase compare
IAI47_20625 -1.4 -2.4 DUF2946 domain-containing protein compare
IAI47_13700 -1.4 -2.9 Tol-Pal system protein TolQ compare
IAI47_04870 -1.4 -4.8 elongation factor 4 compare
IAI47_04425 -1.4 -6.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_00940 -1.4 -6.1 HTH-type transcriptional repressor FabR compare
IAI47_13720 -1.4 -4.3 cytochrome d ubiquinol oxidase subunit II compare
IAI47_06245 -1.4 -3.1 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_18770 -1.4 -2.1 type I addiction module toxin, SymE family compare
IAI47_00375 -1.4 -9.8 ribose operon transcriptional repressor RbsR compare
IAI47_11760 -1.4 -1.2 TonB-dependent siderophore receptor compare
IAI47_09750 -1.3 -5.0 ROK family transcriptional regulator compare
IAI47_12570 -1.3 -0.8 tRNA-Ser compare
IAI47_07075 -1.3 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_08135 -1.3 -6.0 flagellar export chaperone FliS compare
IAI47_11450 -1.3 -3.9 ankyrin repeat domain-containing protein compare
IAI47_04120 -1.3 -8.7 GTP diphosphokinase compare
IAI47_18715 -1.3 -0.9 YibL family ribosome-associated protein compare
IAI47_00930 -1.3 -5.2 DNA-binding transcriptional regulator OxyR compare
IAI47_06235 -1.3 -3.4 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_03645 -1.3 -7.6 O-antigen ligase family protein compare
IAI47_04835 -1.3 -5.4 ATP-dependent RNA helicase SrmB compare
IAI47_06900 -1.3 -2.2 phosphatase PAP2 family protein compare
IAI47_12865 -1.2 -5.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_04190 -1.2 -4.1 adenylyl-sulfate kinase compare
IAI47_18480 -1.2 -5.6 lipid III flippase WzxE compare
IAI47_12220 -1.2 -3.4 DNA damage-inducible protein I compare
IAI47_18055 -1.2 -3.6 DNA-binding protein HU-alpha compare
IAI47_08445 -1.2 -0.8 Holliday junction branch migration protein RuvA compare
IAI47_00500 -1.2 -6.8 ATP-dependent DNA helicase RecG compare
IAI47_00505 -1.2 -3.6 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_17005 -1.2 -4.9 polyribonucleotide nucleotidyltransferase compare
IAI47_06940 -1.2 -0.6 tyrosine-protein kinase Wzc compare
IAI47_08010 -1.2 -4.3 flagella biosynthesis chaperone FliJ compare
IAI47_10840 -1.2 -3.4 pyruvate kinase PykF compare
IAI47_12120 -1.2 -6.8 flagellar hook-associated protein FlgK compare
IAI47_13570 -1.2 -1.6 multidrug efflux pump-associated protein, AcrZ family compare
IAI47_07755 -1.2 -2.8 phosphonate C-P lyase system protein PhnG compare
IAI47_21765 -1.2 -1.7 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_03680 -1.2 -6.1 transketolase compare
IAI47_02585 -1.1 -2.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_08855 -1.1 -3.3 septum site-determining protein MinC compare
IAI47_05195 -1.1 -1.5 DnaA inactivator Hda compare
IAI47_06510 -1.1 -4.9 HlyD family efflux transporter periplasmic adaptor subunit compare
IAI47_04110 -1.1 -8.6 two-component sensor histidine kinase BarA compare
IAI47_20850 -1.1 -2.7 TetR/AcrR family transcriptional regulator compare
IAI47_13495 -1.1 -3.2 GTP 3',8-cyclase MoaA compare
IAI47_02380 -1.1 -1.3 DNA-binding transcriptional regulator Fis compare
IAI47_12280 -1.1 -5.9 glucan biosynthesis protein G compare
IAI47_09855 -1.1 -3.2 DUF2384 domain-containing protein compare
IAI47_13145 -1.1 -3.8 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_17000 -1.1 -4.6 lipoprotein NlpI compare
IAI47_13900 -1.1 -6.5 asparagine synthase B compare
IAI47_12165 -1.1 -4.6 flagellar basal body rod protein FlgB compare
IAI47_10575 -1.1 -2.1 hypothetical protein compare
IAI47_07030 -1.0 -3.6 HAD family hydrolase compare
IAI47_09325 -1.0 -6.0 FdhF/YdeP family oxidoreductase compare
IAI47_16350 -1.0 -4.6 phosphoserine phosphatase compare
IAI47_12645 -1.0 -2.0 porin OmpA compare
IAI47_07165 -1.0 -1.1 exodeoxyribonuclease I compare
IAI47_08325 -1.0 -4.5 protein-glutamate O-methyltransferase CheR compare
IAI47_08140 -1.0 -5.8 flagellar filament capping protein FliD compare
IAI47_18415 -1.0 -1.6 lipoprotein compare
IAI47_03640 -1.0 -6.3 glycosyltransferase compare
IAI47_07985 -1.0 -3.8 flagellar biosynthetic protein FliO compare
IAI47_17155 -1.0 -5.3 calcium/sodium antiporter compare
IAI47_00670 -1.0 -7.1 sugar glycosyltransferase compare
IAI47_15115 -1.0 -4.4 glutamate-5-semialdehyde dehydrogenase compare
IAI47_00430 -1.0 -6.1 DNA polymerase I compare
IAI47_03855 -1.0 -4.2 LysR family transcriptional regulator compare
IAI47_09105 -1.0 -2.1 YciY family protein compare
IAI47_03490 -1.0 -1.8 hypothetical protein compare
IAI47_07090 -1.0 -5.0 histidinol dehydrogenase compare
IAI47_20510 -1.0 -3.3 maltose operon protein MalM compare
IAI47_11880 -1.0 -1.5 hypothetical protein compare
IAI47_19690 -1.0 -0.7 hypothetical protein compare
IAI47_03820 -0.9 -2.0 site-specific tyrosine recombinase XerD compare
IAI47_07015 -0.9 -3.1 ABC transporter ATP-binding protein compare
IAI47_16205 -0.9 -3.4 threonine synthase compare
IAI47_08020 -0.9 -3.9 flagellar assembly protein FliH compare
IAI47_07800 -0.9 -3.0 phosphonate ABC transporter ATP-binding protein compare
IAI47_00675 -0.9 -5.9 glycosyltransferase family 9 protein compare
IAI47_17035 -0.9 -1.7 ribosome maturation factor RimP compare
IAI47_00330 -0.9 -6.1 low affinity potassium transporter Kup compare
IAI47_19295 -0.9 -1.7 hypothetical protein compare
IAI47_18410 -0.9 -2.6 diaminopimelate epimerase compare
IAI47_03235 -0.9 -2.8 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_15240 -0.9 -2.4 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase compare
IAI47_09530 -0.9 -3.2 acid resistance repetitive basic protein Asr compare
IAI47_21780 -0.9 -2.3 hypothetical protein compare
IAI47_01780 -0.9 -1.5 Fe-S biogenesis protein NfuA compare
IAI47_13545 -0.9 -4.0 6-phosphogluconolactonase compare
IAI47_15540 -0.9 -4.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_11150 -0.9 -2.2 D-threitol dehydrogenase compare
IAI47_08025 -0.9 -2.8 flagellar motor switch protein FliG compare
IAI47_09320 -0.9 -3.9 exoribonuclease II compare
IAI47_11515 -0.9 -0.9 hypothetical protein compare
IAI47_06790 -0.9 -3.2 alkyl hydroperoxide reductase subunit C compare
IAI47_21335 -0.9 -1.6 RepB family plasmid replication initiator protein compare
IAI47_16080 -0.9 -3.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_12435 -0.8 -1.8 hypothetical protein compare
IAI47_06490 -0.8 -7.7 Ig-like domain-containing protein compare
IAI47_08800 -0.8 -1.3 YoaH family protein compare
IAI47_08105 -0.8 -1.3 DinI family protein compare
IAI47_11730 -0.8 -3.0 molecular chaperone compare
IAI47_08270 -0.8 -2.5 trehalose-phosphatase compare
IAI47_07020 -0.8 -0.8 hypothetical protein compare
IAI47_12115 -0.8 -4.2 flagellar hook-associated protein FlgL compare
IAI47_13840 -0.8 -1.7 replication initiation negative regulator SeqA compare
IAI47_12125 -0.8 -3.5 flagellar assembly peptidoglycan hydrolase FlgJ compare
IAI47_09380 -0.8 -2.8 peptide ABC transporter substrate-binding protein SapA compare
IAI47_16005 -0.8 -3.4 3-isopropylmalate dehydrogenase compare
IAI47_03570 -0.8 -1.5 YggL family protein compare
IAI47_06055 -0.8 -2.2 tRNA-Arg compare
IAI47_08340 -0.8 -2.6 protein phosphatase CheZ compare
IAI47_01005 -0.8 -4.5 DUF413 domain-containing protein compare
IAI47_09185 -0.8 -1.9 glutamine amidotransferase compare
IAI47_16995 -0.8 -0.9 protein YrbN compare
IAI47_02385 -0.8 -4.2 tRNA dihydrouridine synthase DusB compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in survival experiments

For survival Treatment=UGA synthetic gw pH4.4; TreatmentDuration=24hrs; Outgrowth=LBkan50 across organisms