Experiment set5IT073 for Agrobacterium fabrum C58

Compare to:

R2A with Phenazine methosulfate 0.05 mM

200 most important genes:

  gene name fitness t score description  
Atu0434 -2.9 -4.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0050 -2.7 -7.5 two component response regulator compare
Atu1688 -2.6 -4.7 indole-3-glycerol-phosphate synthase compare
Atu0769 -2.5 -2.0 protoheme IX farnesyltransferase compare
Atu1687 -2.4 -5.2 anthranilate phosphoribosyltransferase compare
Atu0051 -2.3 -6.8 two component sensor kinase compare
Atu3469 -2.2 -3.1 phosphoglyceromutase compare
Atu0142 -2.2 -2.5 cytochrome o ubiquinol oxidase subunit II compare
Atu2289 -2.1 -9.9 anthranilate synthase component I and II compare
Atu2801 -1.9 -4.0 precorrin-2 C20 methyltransferase compare
Atu0017 -1.9 -2.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4148 -1.7 -4.5 UDP-glucuronic acid epimerase compare
Atu2585 -1.7 -4.4 hypothetical protein compare
Atu1891 -1.6 -3.9 cobalamin biosynthesis protein compare
Atu2799 -1.6 -5.7 precorrin-6x reductase compare
Atu3598 -1.5 -1.6 thiol:disulfide interchange protein compare
Atu2787 -1.4 -1.4 hypothetical protein compare
Atu0598 -1.4 -7.2 phosphogluconate dehydratase compare
Atu1570 -1.4 -1.3 hypothetical protein compare
Atu1686 -1.4 -8.7 peptidyl-prolyl cis-trans isomerse D compare
Atu2805 -1.4 -4.1 cobalamin synthesis protein compare
Atu2582 -1.3 -3.6 UDP-glucose/GDP-mannose dehydrogenase compare
Atu2802 -1.3 -5.7 precorrin-8X methylmutase compare
Atu0361 -1.3 -2.6 transcriptional regulator compare
Atu2807 -1.3 -5.1 cob(I)alamin adenosyltransferase compare
Atu2577 -1.3 -9.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu0886 -1.3 -1.8 hypothetical protein compare
Atu1030 -1.2 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0184 -1.2 -2.5 glucokinase compare
Atu4149 -1.2 -5.0 UDP-glucose 6-dehydrogenase compare
Atu2796 -1.2 -4.3 precorrin-4 C11-methyltransferase compare
Atu1149 -1.2 -1.7 adenylate cyclase compare
Atu2800 -1.2 -3.2 precorrin-3B C17-methyltransferase compare
Atu1542 -1.2 -4.2 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2207 -1.1 -3.8 two component sensor kinase compare
Atu2809 -1.1 -5.3 cobalamin biosynthesis protein compare
Atu5430 -1.1 -1.3 hypothetical protein compare
Atu1588 -1.1 -7.5 homoserine dehydrogenase compare
Atu2591 -1.1 -4.4 glucosyltransferase compare
Atu2073 -1.1 -4.5 membrane protein compare
Atu0768 -1.1 -6.9 cytochrome-c oxidase chain I compare
Atu1620 -1.1 -7.2 triosephosphate isomerase compare
Atu1028 -1.1 -2.5 hypothetical protein compare
Atu0086 -1.1 -0.8 ribosome-binding factor A compare
Atu2804 -1.1 -7.5 cobaltochelatase subunit compare
Atu2590 -1.1 -3.6 hypothetical protein compare
Atu2795 -1.1 -4.6 cobalamin biosynthetic protein compare
Atu2113 -1.1 -2.7 N-acetylmuramoyl-L-alanine amidase compare
Atu0723 -1.1 -2.1 FAD dependent oxidoreductase compare
Atu2808 -1.1 -4.8 cobyric acid synthase compare
Atu2710 -1.1 -5.0 hypothetical protein compare
Atu0189 -1.0 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0846 -1.0 -4.5 transcriptional regulator, MarR family compare
Atu2592 -1.0 -3.2 hypothetical protein compare
Atu3739 -1.0 -2.1 phosphoglycerate kinase compare
Atu1359 -1.0 -1.1 dnaK deletion suppressor protein compare
Atu1469 -1.0 -2.6 hypothetical protein compare
Atu1163 -0.9 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu8087 -0.9 -1.2 putative peptidoglycan binding protein compare
Atu0103 -0.9 -6.0 penicillin-binding protein compare
Atu2368 -0.9 -1.3 hypothetical protein compare
Atu2728 -0.9 -2.7 beta (1-->2) glucan export ATP-binding protein compare
Atu0346 -0.9 -3.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1103 -0.9 -2.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2583 -0.9 -5.2 glycosyltransferase compare
Atu2584 -0.9 -2.2 hypothetical protein compare
Atu0972 -0.9 -3.1 lipA protein compare
Atu4317 -0.9 -2.7 TetR family transcriptional regulator compare
Atu1774 -0.9 -4.3 ABC transporter, substrate binding protein (peptide) compare
Atu0149 -0.9 -3.2 enoyl-(acyl-carrier-protein) reductase compare
Atu0925 -0.9 -3.0 hypothetical protein compare
Atu1354 -0.9 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1874 -0.9 -1.6 RecA protein compare
Atu2125 -0.9 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2685 -0.8 -4.3 aconitate hydratase compare
Atu5115 -0.8 -1.6 hypothetical protein compare
Atu2344 -0.8 -1.5 lactoylglutathione lyase compare
Atu2640 -0.8 -3.5 hypothetical protein compare
Atu2367 -0.8 -1.9 hypothetical protein compare
Atu1810 -0.8 -1.1 hypothetical protein compare
Atu1364 -0.8 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0025 -0.8 -1.2 hypothetical protein compare
Atu8054 -0.8 -0.6 hypothetical protein compare
Atu4418 -0.8 -2.3 glutaryl-CoA dehydrogenase compare
Atu0421 -0.8 -1.0 ABC transporter, membrane spanning protein compare
Atu8180 -0.8 -3.0 hypothetical protein compare
Atu1468 -0.8 -3.5 hypothetical protein compare
Atu2803 -0.8 -2.0 Cobalamin biosynthesis associated protein compare
Atu0141 -0.8 -0.9 cytochrome O ubiquinol oxidase subunit I compare
Atu2798 -0.7 -3.0 precorrin-6y methyltransferase compare
Atu3750 -0.7 -1.8 thiamine-phosphate pyrophosphorylase compare
Atu1685 -0.7 -0.7 hypothetical protein compare
Atu0876 -0.7 -1.4 superoxide dismutase compare
Atu1759 -0.7 -4.0 L-serine dehydratase compare
Atu1467 -0.7 -3.0 hypothetical protein compare
Atu0269 -0.7 -2.0 exodeoxyribonuclease VII large subunit compare
Atu3518 -0.7 -3.5 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu0953 -0.7 -0.9 hypothetical protein compare
Atu3727 -0.7 -2.7 hypothetical protein compare
Atu1075 -0.7 -3.9 amidophosphoribosyltransferase compare
Atu3036 -0.7 -2.5 dipeptide ABC transporter permease compare
Atu4187 -0.7 -1.0 tRNA-Met compare
Atu2324 -0.7 -3.1 ureidoglycolate hydrolase compare
Atu2504 -0.7 -3.9 transcriptional regulator, GntR family compare
Atu0201 -0.7 -0.7 hypothetical protein compare
Atu2793 -0.7 -3.2 cobyrinic acid a,c-diamide synthase compare
Atu2040 -0.7 -2.5 phosphoserine phosphatase compare
Atu5160 -0.7 -2.0 transcriptional regulator protein compare
Atu0486 -0.7 -3.2 dihydroorotate dehydrogenase compare
Atu2017 -0.7 -1.0 hypothetical protein compare
Atu4502 -0.7 -2.9 cobalamin synthesis protein compare
Atu0726 -0.7 -4.2 ring hydroxylating dioxygenase, alpha-subunit compare
Atu2335 -0.6 -0.9 hypothetical protein compare
Atu1056 -0.6 -1.8 hypothetical protein compare
Atu3327 -0.6 -1.9 succinoglycan exopolysaccharide synthesis protein compare
Atu0031 -0.6 -1.0 PTS system, IIA component compare
Atu6131 -0.6 -1.9 TraR Antiactivator compare
Atu2141 -0.6 -2.8 hypothetical protein compare
Atu2123 -0.6 -2.2 methylenetetrahydrofolate reductase compare
Atu1844 -0.6 -1.5 Phosphoribosylformylglycinamidine synthetase compare
Atu0401 -0.6 -2.6 fructokinase compare
Atu3018 -0.6 -1.8 hypothetical protein compare
Atu4792 -0.6 -1.7 hypothetical protein compare
Atu2745 -0.6 -4.7 acetyl-coenzyme A synthetase compare
Atu1644 -0.6 -1.9 hypothetical protein compare
Atu0029 -0.6 -2.8 S-adenosylhomocysteine hydrolase compare
Atu1327 -0.6 -2.0 NADH-ubiquinone oxidoreductase compare
Atu4108 -0.6 -2.4 ribonuclease D compare
Atu0479 -0.6 -2.0 ABC transporter, substrate binding protein (amino acid) compare
Atu1525 -0.6 -1.9 hypothetical protein compare
Atu3963 -0.6 -3.5 GntR family transcriptional regulator compare
Atu6165 -0.6 -0.6 hypothetical protein compare
Atu1447 -0.6 -1.6 two component sensor kinase compare
Atu3755 -0.6 -2.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0749 -0.6 -1.9 biotin synthesis BioY protein compare
Atu6114 -0.6 -1.5 hypothetical protein compare
Atu0638 -0.6 -1.0 hypothetical protein compare
Atu4232 -0.6 -3.4 GntR family transcriptional regulator compare
Atu0166 -0.6 -2.4 hypothetical protein compare
Atu2057 -0.6 -1.4 DNA helicase II compare
Atu1191 -0.6 -2.2 hypothetical protein compare
Atu1141 -0.6 -2.8 Phosphoribosylglycinamide synthetase compare
Atu2205 -0.5 -2.3 transcriptional regulator, MarR family compare
Atu0062 -0.5 -2.7 transcriptional regulator, ROK family compare
Atu1518 -0.5 -2.7 transcriptional regulator, Fur family compare
Atu1062 -0.5 -1.1 phosphatidylserine synthase compare
Atu3668 -0.5 -2.0 siderophore biosynthesis protein compare
Atu0931 -0.5 -3.5 penicillin binding protein compare
Atu2797 -0.5 -1.6 cobalamin biosynthesis protein compare
Atu3387 -0.5 -1.3 sigma factor compare
Atu0185 -0.5 -1.3 methylglyoxal synthase compare
Atu1490 -0.5 -1.3 arsenate reductase compare
Atu1182 -0.5 -1.0 hypothetical protein compare
Atu8017 -0.5 -1.1 hypothetical protein compare
Atu2036 -0.5 -4.0 acetolactate synthase III, large subunit compare
Atu0845 -0.5 -1.2 hypothetical protein compare
Atu1351 -0.5 -2.9 hypothetical protein compare
Atu1578 -0.5 -2.8 ABC transporter, membrane spanning protein (amino acid) compare
Atu3496 -0.5 -2.2 hypothetical protein compare
Atu0535 -0.5 -2.3 hypothetical protein compare
Atu0647 -0.5 -2.4 phosphoribosylamine--glycine ligase compare
Atu0665 -0.5 -3.2 glycolate oxidase subunit compare
Atu1307 -0.5 -1.6 dihydroorotase compare
Atu5158 -0.5 -2.1 hypothetical protein compare
Atu8047 -0.5 -2.1 hypothetical protein compare
Atu0190 -0.5 -3.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu8019 -0.5 -1.2 hypothetical protein compare
Atu2464 -0.5 -1.4 formyltetrahydrofolate deformylase compare
Atu0272 -0.5 -1.6 transcriptional regulator, MarR family compare
Atu1983 -0.5 -2.4 hypothetical protein compare
Atu2726 -0.5 -3.9 pyruvate carboxylase compare
Atu3486 -0.5 -1.1 DeoR family transcriptional regulator compare
Atu0353 -0.5 -2.8 acetyltransferase compare
Atu5125 -0.5 -2.3 GntR family transcriptional regulator compare
Atu3634 -0.5 -2.1 penicillin-binding protein dacf precursor compare
Atu3744 -0.5 -2.6 ABC transporter permease compare
Atu4393 -0.5 -2.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
Atu2832 -0.5 -1.8 tRNA modification GTPase compare
Atu4635 -0.5 -2.0 hypothetical protein compare
Atu1589 -0.5 -2.1 aminotransferase, class I compare
Atu5088 -0.5 -0.8 hypothetical protein compare
Atu0422 -0.5 -0.8 ABC transporter, membrane spanning protein compare
Atu1777 -0.5 -1.5 hypothetical protein compare
Atu0399 -0.5 -1.8 dihydroorotase compare
Atu2028 -0.5 -1.1 transcriptional regulator, ArsR family compare
Atu4514 -0.5 -1.6 RpiR family transcriptional regulator compare
Atu0211 -0.5 -2.6 hypothetical protein compare
Atu2511 -0.5 -2.7 D-alanine aminotransferase compare
Atu0463 -0.5 -2.2 hypothetical protein compare
Atu1845 -0.5 -1.8 phosphoribosylformylglycinamidine synthase I compare
Atu3861 -0.4 -2.2 acyl-CoA hydrolase compare
Atu2794 -0.4 -1.7 uroporphyrin-III C-methyltransferase compare
Atu0520 -0.4 -1.8 chemotaxis receiver protein compare
Atu3466 -0.4 -1.5 ArsR family transcriptional regulator compare
Atu4346 -0.4 -1.8 hypothetical protein compare
Atu1734 -0.4 -1.1 hypothetical protein compare
Atu2063 -0.4 -1.0 hypothetical protein compare
Atu2483 -0.4 -3.5 AcrB/AcrD/AcrF family protein compare
Atu0973 -0.4 -2.4 cycH protein compare
Atu2580 -0.4 -3.5 adenylate cyclase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Phenazine methosulfate across organisms