Experiment set5IT072 for Shewanella loihica PV-4

Compare to:

MinMedia 20C

200 most detrimental genes:

  gene name fitness t score description  
Shew_1819 +2.6 10.2 GntR family transcriptional regulator (RefSeq) compare
Shew_1809 +2.6 14.3 NAD-glutamate dehydrogenase (RefSeq) compare
Shew_1407 +2.3 21.6 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1404 +2.2 19.2 dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) compare
Shew_1004 +2.0 12.9 undecaprenyl pyrophosphate phosphatase (RefSeq) compare
Shew_0470 +2.0 4.0 MATE efflux family protein (RefSeq) compare
Shew_0383 +1.9 10.6 malate dehydrogenase (RefSeq) compare
Shew_0326 +1.8 11.7 HAD family hydrolase (RefSeq) compare
Shew_1411 +1.8 10.7 hexapaptide repeat-containing transferase (RefSeq) compare
Shew_0866 +1.8 3.4 arginine repressor (RefSeq) compare
Shew_1362 +1.7 9.0 sigma-54 dependent trancsriptional regulator (RefSeq) compare
Shew_0086 +1.6 14.7 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_0225 +1.6 2.5 phosphoheptose isomerase (RefSeq) compare
Shew_1398 +1.6 6.6 NusG antitermination factor (RefSeq) compare
Shew_1533 +1.5 12.6 acetyl-CoA synthetase (RefSeq) compare
Shew_3267 +1.4 11.2 sodium/hydrogen exchanger (RefSeq) compare
Shew_2584 +1.4 11.4 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_2573 +1.4 11.0 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_1927 +1.3 2.5 dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_1555 +1.3 3.5 Glu/Leu/Phe/Val dehydrogenase, dimerisation region (RefSeq) compare
Shew_1401 +1.2 10.0 dTDP-glucose 4,6 dehydratase (RefSeq) compare
Shew_3710 tdh +1.2 7.5 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_2572 +1.2 6.9 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_3709 +1.2 9.7 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_1011 +1.2 4.2 citrate transporter (RefSeq) compare
Shew_3805 +1.2 6.9 rhodanese domain-containing protein (RefSeq) compare
Shew_2571 +1.1 9.9 propionyl-CoA carboxylase (RefSeq) compare
Shew_1200 +1.1 6.2 hybrid sensory histidine kinase BarA (RefSeq) compare
Shew_1625 +1.1 4.4 L-serine dehydratase 1 (RefSeq) compare
Shew_1433 +1.1 7.1 UDP-glucose 4-epimerase (RefSeq) compare
Shew_0659 +1.0 5.7 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq) compare
Shew_2570 +1.0 9.5 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_3708 +1.0 8.5 TetR family transcriptional regulator (RefSeq) compare
Shew_1667 +1.0 3.9 acetyl-CoA acetyltransferase (RefSeq) compare
Shew_0022 +1.0 7.9 TrkH family potassium uptake protein (RefSeq) compare
Shew_1926 +1.0 5.1 transketolase, central region (RefSeq) compare
Shew_1657 sucC +0.9 1.4 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_0395 +0.9 3.0 methylation site containing protein (RefSeq) compare
Shew_1925 +0.9 7.4 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq) compare
Shew_2502 +0.9 4.7 ABC transporter-related protein (RefSeq) compare
Shew_0618 +0.9 1.4 hypothetical protein (RefSeq) compare
Shew_1137 +0.9 3.3 alanine racemase domain-containing protein (RefSeq) compare
Shew_3442 +0.8 2.2 hypothetical protein (RefSeq) compare
Shew_2436 +0.8 4.4 membrane protein involved in aromatic hydrocarbon degradation (RefSeq) compare
Shew_0023 +0.8 4.5 protoporphyrinogen oxidase (RefSeq) compare
Shew_2813 +0.8 1.4 phosphopentomutase (RefSeq) compare
Shew_1397 +0.8 3.5 amino acid/peptide transporter (RefSeq) compare
Shew_1559 +0.8 1.2 hypothetical protein (RefSeq) compare
Shew_2576 +0.7 4.5 3-oxoacid CoA-transferase, B subunit (RefSeq) compare
Shew_3602 +0.7 6.2 O-succinylbenzoate-CoA ligase (RefSeq) compare
Shew_3759 +0.7 5.9 imidazolonepropionase (RefSeq) compare
Shew_1437 +0.7 5.5 transcriptional regulator, TyrR (RefSeq) compare
Shew_2907 +0.7 2.6 invasion gene expression up-regulator, SirB (RefSeq) compare
Shew_3814 +0.7 5.8 naphthoate synthase (RefSeq) compare
Shew_0394 +0.7 1.3 hypothetical protein (RefSeq) compare
Shew_1839 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_1669 +0.6 4.1 butyryl-CoA dehydrogenase (RefSeq) compare
Shew_0302 +0.6 6.1 phosphoesterase, PA-phosphatase related (RefSeq) compare
Shew_1357 +0.6 3.9 flagellin domain-containing protein (RefSeq) compare
Shew_3601 +0.6 4.5 O-succinylbenzoate synthase (RefSeq) compare
Shew_1334 +0.6 2.6 3-oxoacyl-(acyl-carrier-protein) synthase (RefSeq) compare
Shew_3677 +0.6 5.5 isochorismate synthase (RefSeq) compare
Shew_2821 +0.6 4.1 lipoprotein NlpI (RefSeq) compare
Shew_1386 +0.6 2.2 CheA signal transduction histidine kinase (RefSeq) compare
Shew_1186 +0.6 2.1 transcriptional regulator NrdR (RefSeq) compare
Shew_3702 +0.6 2.8 glycosyl transferase family protein (RefSeq) compare
Shew_0372 +0.6 1.6 hypothetical protein (RefSeq) compare
Shew_1302 +0.6 3.1 cytochrome bd ubiquinol oxidase, subunit I (RefSeq) compare
Shew_0330 +0.6 1.1 nifR3 family TIM-barrel protein (RefSeq) compare
Shew_1405 +0.6 4.9 glycosyl transferase, group 1 (RefSeq) compare
Shew_0231 +0.6 5.0 hypothetical protein (RefSeq) compare
Shew_1431 +0.6 1.6 hypothetical protein (RefSeq) compare
Shew_3742 +0.5 3.2 flagellar basal body-associated protein FliL-like protein (RefSeq) compare
Shew_3600 +0.5 3.3 alpha/beta hydrolase fold (RefSeq) compare
Shew_3398 +0.5 0.8 cytochrome c, class I (RefSeq) compare
Shew_1417 +0.5 2.1 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase (RefSeq) compare
Shew_2110 +0.5 4.6 hypothetical protein (RefSeq) compare
Shew_2222 +0.5 0.9 hypothetical protein (RefSeq) compare
Shew_1323 +0.5 2.7 acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II-like protein (RefSeq) compare
Shew_3192 +0.5 2.2 hypothetical protein (RefSeq) compare
Shew_2910 +0.5 1.0 hypothetical protein (RefSeq) compare
Shew_3150 +0.5 1.0 antibiotic biosynthesis monooxygenase (RefSeq) compare
Shew_1348 flgE +0.5 1.3 flagellar hook protein FlgE (RefSeq) compare
Shew_1326 +0.5 3.7 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_2481 +0.5 3.9 porin (RefSeq) compare
Shew_1769 +0.5 1.1 NapD family protein (RefSeq) compare
Shew_1630 +0.5 1.5 transcription-repair coupling factor (RefSeq) compare
Shew_1324 +0.5 3.0 hypothetical protein (RefSeq) compare
Shew_0615 +0.5 2.4 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq) compare
Shew_1416 +0.5 4.2 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase (RefSeq) compare
Shew_2219 +0.5 2.0 hypothetical protein (RefSeq) compare
Shew_1322 +0.5 3.5 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_2407 +0.5 2.4 putative periplasmic protease (RefSeq) compare
Shew_2033 +0.5 1.5 hypothetical protein (RefSeq) compare
Shew_1994 +0.5 1.4 universal stress protein UspE (RefSeq) compare
Shew_3352 +0.5 1.5 hypothetical protein (RefSeq) compare
Shew_3404 +0.5 0.8 NosL family protein (RefSeq) compare
Shew_1932 cls +0.5 2.3 cardiolipin synthetase (RefSeq) compare
Shew_1359 +0.5 2.0 flagellar hook-associated 2 domain-containing protein (RefSeq) compare
Shew_1133 +0.4 2.6 hypothetical protein (RefSeq) compare
Shew_1668 +0.4 3.7 methylmalonate-semialdehyde dehydrogenase (RefSeq) compare
Shew_1327 +0.4 2.6 hypothetical protein (RefSeq) compare
Shew_1371 +0.4 3.4 flagellar hook-length control protein (RefSeq) compare
Shew_1802 +0.4 3.2 carboxy-terminal protease (RefSeq) compare
Shew_3695 +0.4 1.0 cytidyltransferase-like protein (RefSeq) compare
Shew_3599 +0.4 3.5 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase (RefSeq) compare
Shew_2406 +0.4 1.1 AraC family transcriptional regulator (RefSeq) compare
Shew_1332 +0.4 3.8 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1727 +0.4 0.8 hypothetical protein (RefSeq) compare
Shew_0285 +0.4 0.9 diguanylate cyclase (RefSeq) compare
Shew_2989 +0.4 1.1 GDSL family lipase (RefSeq) compare
Shew_0911 +0.4 1.3 hypothetical protein (RefSeq) compare
Shew_1439 +0.4 3.1 maleylacetoacetate isomerase (RefSeq) compare
Shew_3295 +0.4 3.0 AFG1 family ATPase (RefSeq) compare
Shew_2480 +0.4 2.6 TonB-dependent receptor (RefSeq) compare
Shew_1892 +0.4 1.7 SNF2-related protein (RefSeq) compare
Shew_0834 +0.4 0.6 hypothetical protein (RefSeq) compare
Shew_0583 +0.4 1.2 two component transcriptional regulator (RefSeq) compare
Shew_1562 +0.4 1.1 pseudouridylate synthase (RefSeq) compare
Shew_3305 +0.4 0.9 CaCA family Na(+)/Ca(+) antiporter (RefSeq) compare
Shew_0301 +0.4 0.7 AsnC family transcriptional regulator (RefSeq) compare
Shew_1364 +0.4 3.0 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1328 +0.4 3.3 acylneuraminate cytidylyltransferase (RefSeq) compare
Shew_3540 +0.4 2.5 NapC/NirT cytochrome c domain-containing protein (RefSeq) compare
Shew_3223 +0.4 0.9 deoxyribonuclease I (RefSeq) compare
Shew_1274 +0.4 2.1 diguanylate cyclase (RefSeq) compare
Shew_1329 +0.4 3.2 N-acylneuraminate-9-phosphate synthase (RefSeq) compare
Shew_1471 +0.4 1.2 hypothetical protein (RefSeq) compare
Shew_1317 +0.4 3.4 TPR repeat-containing protein (RefSeq) compare
Shew_2889 +0.4 1.1 uncharacterized lipoprotein (RefSeq) compare
Shew_2357 +0.4 1.4 D,D-heptose 1,7-bisphosphate phosphatase (RefSeq) compare
Shew_1035 +0.4 1.0 LysR family transcriptional regulator (RefSeq) compare
Shew_2415 +0.4 0.9 major facilitator transporter (RefSeq) compare
Shew_0854 +0.4 1.8 hypothetical protein (RefSeq) compare
Shew_0433 +0.4 2.1 hypothetical protein (RefSeq) compare
Shew_1792 +0.4 1.5 OmpA/MotB domain-containing protein (RefSeq) compare
Shew_3247 +0.4 0.5 hypothetical protein (RefSeq) compare
Shew_2788 +0.4 1.5 peptidase U32 (RefSeq) compare
Shew_0228 +0.4 2.2 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) compare
Shew_0858 +0.4 1.1 oxidoreductase FAD/NAD(P)-binding subunit (RefSeq) compare
Shew_2814 deoA +0.4 1.3 thymidine phosphorylase (RefSeq) compare
Shew_3361 +0.4 1.2 hypothetical protein (RefSeq) compare
Shew_0676 +0.4 1.4 putative lipoprotein (RefSeq) compare
Shew_0913 +0.4 1.3 glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq) compare
Shew_1278 +0.4 0.5 hypothetical protein (RefSeq) compare
Shew_2582 +0.4 1.2 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_1881 +0.3 0.9 hypothetical protein (RefSeq) compare
Shew_3039 +0.3 1.4 hypothetical protein (RefSeq) compare
Shew_1156 +0.3 0.9 hypothetical protein (RefSeq) compare
Shew_3809 +0.3 1.9 protein of unknown function DUF610, YibQ (RefSeq) compare
Shew_1998 +0.3 1.7 protein of unknown function UPF0052 and CofD (RefSeq) compare
Shew_1606 +0.3 0.5 hypothetical protein (RefSeq) compare
Shew_0108 +0.3 2.7 polysaccharide deacetylase (RefSeq) compare
Shew_1609 +0.3 0.7 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq) compare
Shew_2087 +0.3 1.3 hypothetical protein (RefSeq) compare
Shew_0343 +0.3 0.7 hypothetical protein (RefSeq) compare
Shew_3071 +0.3 1.5 lipoprotein (RefSeq) compare
Shew_3817 +0.3 1.2 plastocyanin domain-containing putative protein (RefSeq) compare
Shew_2906 +0.3 0.7 hypothetical protein (RefSeq) compare
Shew_1078 +0.3 2.3 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_1736 +0.3 0.5 hypothetical protein (RefSeq) compare
Shew_0707 +0.3 1.3 YbaK/prolyl-tRNA synthetase associated region (RefSeq) compare
Shew_3054 +0.3 0.5 hypothetical protein (RefSeq) compare
Shew_0430 +0.3 1.2 histone family protein DNA-binding protein (RefSeq) compare
Shew_2445 +0.3 1.2 hypothetical protein (RefSeq) compare
Shew_2155 +0.3 1.4 4-hydroxyphenylpyruvate dioxygenase (RefSeq) compare
Shew_2975 +0.3 1.7 pseudouridine synthase (RefSeq) compare
Shew_0644 +0.3 1.6 FHA domain-containing protein (RefSeq) compare
Shew_3090 +0.3 0.8 hypothetical protein (RefSeq) compare
Shew_3701 +0.3 2.2 hypothetical protein (RefSeq) compare
Shew_1597 +0.3 1.4 maf protein (RefSeq) compare
Shew_0446 +0.3 0.6 hypothetical protein (RefSeq) compare
Shew_2648 +0.3 0.7 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_2999 +0.3 1.6 hypothetical protein (RefSeq) compare
Shew_3607 +0.3 1.9 putative methyltransferase (RefSeq) compare
Shew_1092 +0.3 2.5 amino acid carrier protein (RefSeq) compare
Shew_3271 +0.3 2.5 galactokinase (RefSeq) compare
Shew_0439 +0.3 1.4 CheD, stimulates methylation of MCP proteins (RefSeq) compare
Shew_1152 +0.3 0.5 MscS mechanosensitive ion channel (RefSeq) compare
Shew_1082 +0.3 0.8 hypothetical protein (RefSeq) compare
Shew_1920 +0.3 1.4 alpha/beta hydrolase fold (RefSeq) compare
Shew_1844 +0.3 2.6 chromosome replication initiation inhibitor protein (RefSeq) compare
Shew_1304 +0.3 0.6 cyd operon protein YbgT (RefSeq) compare
Shew_0483 +0.3 2.4 hypothetical protein (RefSeq) compare
Shew_0959 +0.3 1.2 hypothetical protein (RefSeq) compare
Shew_3813 +0.3 2.1 hypothetical protein (RefSeq) compare
Shew_2288 +0.3 1.3 galactose-1-phosphate uridylyltransferase (RefSeq) compare
Shew_0636 +0.3 1.3 hypothetical protein (RefSeq) compare
Shew_2119 +0.3 1.4 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_1910 +0.3 1.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq) compare
Shew_3774 +0.3 1.7 acetyltransferase-like (RefSeq) compare
Shew_1762 +0.3 1.2 hydrogenase expression/formation protein (RefSeq) compare
Shew_3650 +0.3 1.4 lytic transglycosylase, catalytic (RefSeq) compare
Shew_1496 +0.3 1.3 putative lipoprotein (RefSeq) compare
Shew_2039 +0.3 2.4 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0781 +0.3 2.5 peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq) compare
Shew_1033 +0.3 2.0 putative radical SAM protein (RefSeq) compare
Shew_3098 +0.3 2.0 NADH:flavin oxidoreductase/NADH oxidase (RefSeq) compare
Shew_3388 +0.3 0.3 hypothetical protein (RefSeq) compare
Shew_3693 +0.3 2.0 ADP-heptose--lipooligosaccharide heptosyltransferase III (RefSeq) compare


Specific Phenotypes

For 11 genes in this experiment