Experiment set5IT071 for Shewanella loihica PV-4

Compare to:

LB 30C

200 most detrimental genes:

  gene name fitness t score description  
Shew_0225 +1.5 2.5 phosphoheptose isomerase (RefSeq) compare
Shew_1512 +1.2 5.8 phosphoribosylglycinamide formyltransferase (RefSeq) compare
Shew_1407 +1.2 11.2 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_2302 +1.1 7.0 amidophosphoribosyltransferase (RefSeq) compare
Shew_1411 +1.1 9.7 hexapaptide repeat-containing transferase (RefSeq) compare
Shew_1398 +1.1 4.8 NusG antitermination factor (RefSeq) compare
Shew_1301 +1.0 8.4 phosphoribosylformylglycinamidine synthase (RefSeq) compare
Shew_1819 +1.0 3.9 GntR family transcriptional regulator (RefSeq) compare
Shew_3487 pyrE +0.9 4.8 orotate phosphoribosyltransferase (RefSeq) compare
Shew_1128 +0.8 5.9 LysR family transcriptional regulator (RefSeq) compare
Shew_1401 +0.8 6.9 dTDP-glucose 4,6 dehydratase (RefSeq) compare
Shew_3267 +0.8 6.4 sodium/hydrogen exchanger (RefSeq) compare
Shew_1210 +0.8 3.2 stationary-phase survival protein SurE (RefSeq) compare
Shew_1403 +0.7 5.3 dTDP-4-dehydrorhamnose reductase (RefSeq) compare
Shew_0728 +0.7 5.1 dihydroorotase (RefSeq) compare
Shew_1405 +0.7 6.2 glycosyl transferase, group 1 (RefSeq) compare
Shew_0659 +0.7 4.7 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq) compare
Shew_1470 +0.7 3.2 sulfatase (RefSeq) compare
Shew_3305 +0.7 2.0 CaCA family Na(+)/Ca(+) antiporter (RefSeq) compare
Shew_1404 +0.7 5.9 dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq) compare
Shew_3388 +0.6 0.9 hypothetical protein (RefSeq) compare
Shew_1630 +0.6 1.6 transcription-repair coupling factor (RefSeq) compare
Shew_1080 +0.6 1.9 homoserine kinase (RefSeq) compare
Shew_1810 +0.6 2.2 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_1013 +0.6 4.7 aspartate carbamoyltransferase (RefSeq) compare
Shew_0394 +0.6 1.4 hypothetical protein (RefSeq) compare
Shew_1417 +0.6 4.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase (RefSeq) compare
Shew_2402 +0.6 1.1 ABC transporter-related protein (RefSeq) compare
Shew_3681 +0.6 5.1 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1402 +0.6 4.6 glucose-1-phosphate thymidylyltransferase (RefSeq) compare
Shew_3702 +0.6 3.0 glycosyl transferase family protein (RefSeq) compare
Shew_2008 +0.6 1.1 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1133 +0.6 2.7 hypothetical protein (RefSeq) compare
Shew_3413 +0.5 2.7 phosphoribosylamine--glycine ligase (RefSeq) compare
Shew_2184 +0.5 2.0 septum site-determining protein MinC (RefSeq) compare
Shew_1416 +0.5 4.4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase (RefSeq) compare
Shew_0326 +0.5 1.9 HAD family hydrolase (RefSeq) compare
Shew_2481 +0.5 3.9 porin (RefSeq) compare
Shew_2906 +0.5 1.4 hypothetical protein (RefSeq) compare
Shew_1769 +0.5 1.3 NapD family protein (RefSeq) compare
Shew_0842 +0.5 1.8 two component LuxR family transcriptional regulator (RefSeq) compare
Shew_1861 +0.5 2.2 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin (RefSeq) compare
Shew_2176 +0.5 1.0 disulphide bond formation protein DsbB (RefSeq) compare
Shew_3062 +0.5 4.0 glycine dehydrogenase (RefSeq) compare
Shew_2421 +0.5 4.6 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) compare
Shew_3064 gcvT +0.5 3.8 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_1961 +0.5 2.0 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_1162 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_1471 +0.5 1.7 hypothetical protein (RefSeq) compare
Shew_0383 +0.5 3.3 malate dehydrogenase (RefSeq) compare
Shew_0806 +0.4 1.5 MltA-interacting MipA family protein (RefSeq) compare
Shew_0959 +0.4 1.7 hypothetical protein (RefSeq) compare
Shew_3682 +0.4 3.8 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1454 +0.4 1.4 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_3548 +0.4 1.6 hypothetical protein (RefSeq) compare
Shew_2052 +0.4 1.0 TetR family transcriptional regulator (RefSeq) compare
Shew_3063 +0.4 0.9 glycine cleavage system protein H (RefSeq) compare
Shew_0022 +0.4 2.6 TrkH family potassium uptake protein (RefSeq) compare
Shew_0411 +0.4 2.5 outer membrane efflux protein (RefSeq) compare
Shew_2155 +0.4 1.4 4-hydroxyphenylpyruvate dioxygenase (RefSeq) compare
Shew_1433 +0.4 2.8 UDP-glucose 4-epimerase (RefSeq) compare
Shew_0540 +0.4 1.1 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_1393 +0.4 1.4 FlhB domain-containing protein (RefSeq) compare
Shew_1931 +0.4 1.0 alkylphosphonate utilization operon protein PhnA (RefSeq) compare
Shew_1445 +0.4 0.7 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) compare
Shew_1802 +0.4 2.7 carboxy-terminal protease (RefSeq) compare
Shew_1566 +0.4 1.9 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) compare
Shew_0722 +0.4 0.8 hypothetical protein (RefSeq) compare
Shew_0469 +0.4 0.6 pentapeptide repeat-containing protein (RefSeq) compare
Shew_0858 +0.4 1.5 oxidoreductase FAD/NAD(P)-binding subunit (RefSeq) compare
Shew_0930 +0.4 1.0 AMMECR1 domain-containing protein (RefSeq) compare
Shew_0932 +0.4 1.0 radical SAM domain-containing protein (RefSeq) compare
Shew_1173 +0.4 1.4 hypothetical protein (RefSeq) compare
Shew_2892 +0.4 2.6 major facilitator transporter (RefSeq) compare
Shew_2436 +0.4 2.0 membrane protein involved in aromatic hydrocarbon degradation (RefSeq) compare
Shew_3805 +0.4 3.0 rhodanese domain-containing protein (RefSeq) compare
Shew_0495 +0.4 0.7 hypothetical protein (RefSeq) compare
Shew_1224 +0.4 3.4 sodium:dicarboxylate symporter (RefSeq) compare
Shew_1278 +0.4 0.6 hypothetical protein (RefSeq) compare
Shew_0762 +0.4 1.6 hypothetical protein (RefSeq) compare
Shew_1001 +0.4 0.7 putative glycerol-3-phosphate acyltransferase PlsY (RefSeq) compare
Shew_1762 +0.4 1.6 hydrogenase expression/formation protein (RefSeq) compare
Shew_1994 +0.4 1.2 universal stress protein UspE (RefSeq) compare
Shew_1362 +0.4 1.7 sigma-54 dependent trancsriptional regulator (RefSeq) compare
Shew_1727 +0.3 0.7 hypothetical protein (RefSeq) compare
Shew_2001 +0.3 1.6 hypothetical protein (RefSeq) compare
Shew_0648 +0.3 0.5 hypothetical protein (RefSeq) compare
Shew_2362 +0.3 1.6 dihydrodipicolinate synthase (RefSeq) compare
Shew_0877 apaH +0.3 2.6 diadenosine tetraphosphatase (RefSeq) compare
Shew_1912 +0.3 0.8 deoxyguanosinetriphosphate triphosphohydrolase-like protein (RefSeq) compare
Shew_2380 +0.3 2.3 putative sulfate transport protein CysZ (RefSeq) compare
Shew_0560 +0.3 1.2 hypothetical protein (RefSeq) compare
Shew_1163 +0.3 0.9 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_0024 +0.3 0.7 ArsR family transcriptional regulator (RefSeq) compare
Shew_1246 +0.3 1.0 hypothetical protein (RefSeq) compare
Shew_0453 +0.3 1.0 response regulator receiver protein (RefSeq) compare
Shew_3150 +0.3 0.6 antibiotic biosynthesis monooxygenase (RefSeq) compare
Shew_3404 +0.3 0.6 NosL family protein (RefSeq) compare
Shew_2463 +0.3 1.7 hypothetical protein (RefSeq) compare
Shew_0741 +0.3 1.6 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_2821 +0.3 2.3 lipoprotein NlpI (RefSeq) compare
Shew_3708 +0.3 2.9 TetR family transcriptional regulator (RefSeq) compare
Shew_0914 +0.3 1.7 NADPH-dependent FMN reductase (RefSeq) compare
Shew_1447 +0.3 1.8 major facilitator transporter (RefSeq) compare
Shew_2976 +0.3 1.4 hypothetical protein (RefSeq) compare
Shew_1562 +0.3 0.8 pseudouridylate synthase (RefSeq) compare
Shew_0679 +0.3 1.3 hypothetical protein (RefSeq) compare
Shew_1400 +0.3 0.7 lipopolysaccharide biosynthesis protein (RefSeq) compare
Shew_0084 +0.3 0.7 hypothetical protein (RefSeq) compare
Shew_0956 +0.3 1.4 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_1778 +0.3 1.8 glutamine amidotransferase (RefSeq) compare
Shew_1806 +0.3 1.3 hypothetical protein (RefSeq) compare
Shew_0302 +0.3 2.8 phosphoesterase, PA-phosphatase related (RefSeq) compare
Shew_1865 +0.3 2.0 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_2547 +0.3 1.1 pseudouridine synthase (RefSeq) compare
Shew_0438 +0.3 0.5 GumN family protein (RefSeq) compare
Shew_1771 +0.3 1.6 nitrate reductase cytochrome c-type subunit (NapB) (RefSeq) compare
Shew_1330 +0.3 0.7 Rieske (2Fe-2S) domain-containing protein (RefSeq) compare
Shew_0372 +0.3 1.2 hypothetical protein (RefSeq) compare
Shew_1910 +0.3 1.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq) compare
Shew_3439 +0.3 2.6 type II secretion system protein (RefSeq) compare
Shew_1456 +0.3 1.8 phospholipase D/transphosphatidylase (RefSeq) compare
Shew_1235 +0.3 1.2 hypothetical protein (RefSeq) compare
Shew_1875 +0.3 1.2 peptidase M28 (RefSeq) compare
Shew_1647 +0.3 2.2 acriflavin resistance protein (RefSeq) compare
Shew_2489 +0.3 1.6 helix-hairpin-helix repeat-containing competence protein ComEA (RefSeq) compare
Shew_1563 +0.3 1.8 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_2890 +0.3 0.8 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_1886 +0.3 1.7 alpha amylase, catalytic region (RefSeq) compare
Shew_2010 +0.3 1.0 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_3438 +0.3 2.6 type IV-A pilus assembly ATPase PilB (RefSeq) compare
Shew_3046 +0.3 1.4 carboxymuconolactone decarboxylase (RefSeq) compare
Shew_2202 +0.3 0.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq) compare
Shew_3653 +0.3 0.5 hypothetical protein (RefSeq) compare
Shew_2372 +0.3 0.7 small component of L-lactate and L-malate uptake system (from data) compare
Shew_3197 +0.3 0.8 hypothetical protein (RefSeq) compare
Shew_1397 +0.3 1.3 amino acid/peptide transporter (RefSeq) compare
Shew_1125 +0.3 1.0 hypothetical protein (RefSeq) compare
Shew_2171 +0.3 1.3 peptidase T2, asparaginase 2 (RefSeq) compare
Shew_0556 +0.3 1.7 hypothetical protein (RefSeq) compare
Shew_2011 +0.3 0.9 acriflavin resistance protein (RefSeq) compare
Shew_1212 +0.3 0.8 peptidase M23B (RefSeq) compare
Shew_2385 +0.3 2.1 TonB-dependent receptor, plug (RefSeq) compare
Shew_2812 deoD +0.2 1.0 purine nucleoside phosphorylase (RefSeq) compare
Shew_2036 +0.2 1.6 riboflavin synthase subunit alpha (RefSeq) compare
Shew_2582 +0.2 1.0 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_0575 +0.2 0.6 glutamine amidotransferase of anthranilate synthase (RefSeq) compare
Shew_3148 +0.2 0.7 MarR family transcriptional regulator (RefSeq) compare
Shew_2426 fadI +0.2 1.6 3-ketoacyl-CoA thiolase (RefSeq) compare
Shew_2804 +0.2 0.6 type IV pilus assembly PilZ (RefSeq) compare
Shew_2763 +0.2 1.2 dienelactone hydrolase (RefSeq) compare
Shew_0676 +0.2 1.6 putative lipoprotein (RefSeq) compare
Shew_0939 +0.2 2.0 leucyl aminopeptidase (RefSeq) compare
Shew_2445 +0.2 1.1 hypothetical protein (RefSeq) compare
Shew_1828 +0.2 1.3 peptidoglycan binding domain-containing protein (RefSeq) compare
Shew_1126 +0.2 1.3 glutaminase (RefSeq) compare
Shew_1982 +0.2 1.8 phage integrase family protein (RefSeq) compare
Shew_2753 +0.2 1.1 TPR repeat-containing protein (RefSeq) compare
Shew_2642 +0.2 0.8 flavodoxin (RefSeq) compare
Shew_0408 +0.2 2.1 hypothetical protein (RefSeq) compare
Shew_3709 +0.2 2.1 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_0581 +0.2 1.3 hypothetical protein (RefSeq) compare
Shew_3045 +0.2 1.0 sugar-binding protein, putative (RefSeq) compare
Shew_2160 +0.2 1.8 hypothetical protein (RefSeq) compare
Shew_2287 +0.2 1.1 galactokinase (RefSeq) compare
Shew_1970 +0.2 1.9 histidine kinase (RefSeq) compare
Shew_1310 +0.2 1.9 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_2241 +0.2 0.7 hypothetical protein (RefSeq) compare
Shew_1264 +0.2 0.6 UvrD/REP helicase (RefSeq) compare
Shew_2842 +0.2 1.2 peptidase M48, Ste24p (RefSeq) compare
Shew_3189 +0.2 1.2 hypothetical protein (RefSeq) compare
Shew_1281 +0.2 0.8 hypothetical protein (RefSeq) compare
Shew_0097 +0.2 1.5 two component transcriptional regulator (RefSeq) compare
Shew_1615 +0.2 1.3 ABC transporter-related protein (RefSeq) compare
Shew_2428 +0.2 0.9 hypothetical protein (RefSeq) compare
Shew_1977 +0.2 1.1 diguanylate cyclase with PAS/PAC sensor (RefSeq) compare
Shew_2288 +0.2 1.5 galactose-1-phosphate uridylyltransferase (RefSeq) compare
Shew_1418 +0.2 2.0 UTP-glucose-1-phosphate uridylyltransferase GalU (RefSeq) compare
Shew_1978 +0.2 0.5 hypothetical protein (RefSeq) compare
Shew_2033 +0.2 0.9 hypothetical protein (RefSeq) compare
Shew_0396 +0.2 0.9 methylation site containing protein (RefSeq) compare
Shew_2983 +0.2 1.5 Tat pathway signal sequence domain-containing protein (RefSeq) compare
Shew_R0033 +0.2 0.7 tRNA-Arg (RefSeq) compare
Shew_0268 +0.2 0.9 transcriptional antiterminator, Rof (RefSeq) compare
Shew_0131 +0.2 1.4 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0206 +0.2 1.8 argininosuccinate lyase (RefSeq) compare
Shew_2350 +0.2 0.8 2OG-Fe(II) oxygenase (RefSeq) compare
Shew_2425 fadJ +0.2 1.5 multifunctional fatty acid oxidation complex subunit alpha (RefSeq) compare
Shew_1677 +0.2 0.9 leucyl aminopeptidase (RefSeq) compare
Shew_3371 +0.2 1.0 hypothetical protein (RefSeq) compare
Shew_2617 +0.2 0.8 potassium efflux system protein (RefSeq) compare
Shew_3582 +0.2 1.8 hypothetical protein (RefSeq) compare
Shew_2439 +0.2 1.0 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_0516 +0.2 1.1 cytochrome c family protein (RefSeq) compare
Shew_3320 +0.2 1.4 FG-GAP repeat-containing protein (RefSeq) compare
Shew_3395 +0.2 0.8 radical SAM domain-containing protein (RefSeq) compare
Shew_2944 +0.2 1.3 hypothetical protein (RefSeq) compare
Shew_1261 +0.2 1.4 type III restriction enzyme, res subunit (RefSeq) compare
Shew_0665 +0.2 1.8 sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq) compare
Shew_2573 +0.2 1.9 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in temperature experiments