Experiment set5IT062 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium arsenate dibasic heptahydrate 0.0005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5014 -4.3 -2.1 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4160 -4.0 -2.0 Cytochrome c5 compare
Pf6N2E2_5160 -3.8 -2.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5068 -3.4 -13.3 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5069 -3.4 -6.7 putative Cytochrome bd2, subunit II compare
Pf6N2E2_596 -3.2 -6.8 Arsenic efflux pump protein compare
Pf6N2E2_1475 -3.1 -8.5 Arsenic resistance protein ArsH compare
Pf6N2E2_4369 -3.0 -2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3611 -2.7 -1.8 HflC protein compare
Pf6N2E2_3908 -2.2 -6.6 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3303 -2.1 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_595 -2.1 -2.5 Arsenical resistance operon repressor compare
Pf6N2E2_5928 -2.0 -9.1 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2219 -2.0 -2.5 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_6057 -1.9 -3.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3659 -1.9 -5.0 Protein fixF compare
Pf6N2E2_3096 -1.8 -1.9 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5523 -1.7 -4.9 Small-conductance mechanosensitive channel compare
Pf6N2E2_4153 -1.7 -1.6 Sensory box histidine kinase compare
Pf6N2E2_1056 -1.7 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_61 -1.6 -7.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4612 -1.6 -2.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3658 -1.6 -6.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3607 -1.6 -6.3 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5316 -1.5 -1.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_1315 -1.5 -1.5 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_426 -1.5 -5.1 Arsenate reductase (EC 1.20.4.1) compare
Pf6N2E2_62 -1.5 -3.5 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5430 -1.5 -6.2 Transglycosylase, Slt family compare
Pf6N2E2_5927 -1.4 -4.6 ABC-type multidrug transport system, ATPase component compare
Pf6N2E2_2487 -1.4 -1.3 FIG00956090: hypothetical protein compare
Pf6N2E2_70 -1.4 -3.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5261 -1.4 -1.5 FIG00956983: hypothetical protein compare
Pf6N2E2_2473 -1.4 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_4148 -1.3 -5.0 Glutamate-aspartate carrier protein compare
Pf6N2E2_5573 -1.3 -4.0 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_288 -1.3 -1.6 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_330 -1.3 -4.1 Mesenchymal stem cell protein DSCD75 compare
Pf6N2E2_3477 -1.3 -2.3 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_2264 -1.3 -3.4 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3062 -1.2 -3.6 Membrane-associated zinc metalloprotease compare
Pf6N2E2_3661 -1.2 -3.6 hypothetical protein compare
Pf6N2E2_1825 -1.2 -3.0 FOG: EAL domain protein compare
Pf6N2E2_5748 -1.2 -3.1 Transcriptional activator protein LuxR compare
Pf6N2E2_4918 -1.2 -2.8 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_819 -1.2 -1.8 Response regulator compare
Pf6N2E2_2425 -1.2 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1441 -1.2 -1.7 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5406 -1.2 -2.0 FIG00958224: hypothetical protein compare
Pf6N2E2_2126 -1.1 -4.4 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_145 -1.1 -4.4 putative exported protein compare
Pf6N2E2_1116 -1.1 -1.5 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_855 -1.1 -2.6 Transcriptional regulator, IclR family compare
Pf6N2E2_3351 -1.1 -3.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2503 -1.1 -1.9 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_959 -1.1 -2.8 putative membrane protein compare
Pf6N2E2_4459 -1.1 -1.7 Transcriptional regulator, GntR family compare
Pf6N2E2_5646 -1.1 -1.3 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_1544 -1.1 -3.4 Thermostable hemolysin delta-VPH compare
Pf6N2E2_3251 -1.1 -6.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4416 -1.0 -2.0 Tyrosine recombinase XerC compare
Pf6N2E2_3942 -1.0 -5.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_6045 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_2121 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_2646 -1.0 -1.6 FIG00953416: hypothetical protein compare
Pf6N2E2_2413 -1.0 -1.8 FIG074102: hypothetical protein compare
Pf6N2E2_3480 -1.0 -1.5 Transcriptional regulator, ArsR family compare
Pf6N2E2_1692 -1.0 -2.0 transporter, LysE family compare
Pf6N2E2_5584 -1.0 -1.8 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_2755 -1.0 -1.6 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2217 -1.0 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3634 -1.0 -1.5 Transporter compare
Pf6N2E2_3782 -1.0 -1.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3198 -1.0 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4640 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_1474 -1.0 -3.9 SAM-dependent methyltransferases compare
Pf6N2E2_3941 -1.0 -2.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_939 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_4305 -0.9 -1.0 FIG00959590: hypothetical protein compare
Pf6N2E2_2323 -0.9 -2.3 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_3429 -0.9 -2.7 hypothetical protein compare
Pf6N2E2_1435 -0.9 -1.6 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_2509 -0.9 -1.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1404 -0.9 -1.8 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_3021 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_700 -0.9 -2.3 Heme d1 biosynthesis protein NirL compare
Pf6N2E2_2390 -0.9 -1.7 FIG00959101: hypothetical protein compare
Pf6N2E2_98 -0.9 -1.7 putative transmembrane protein compare
Pf6N2E2_5052 -0.9 -1.8 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_6130 -0.9 -2.2 5S RNA compare
Pf6N2E2_4353 -0.9 -2.5 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_572 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_144 -0.9 -7.0 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5727 -0.9 -2.9 FIG00955360: hypothetical protein compare
Pf6N2E2_479 -0.9 -3.0 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_4050 -0.9 -2.5 FIG00953718: hypothetical protein compare
Pf6N2E2_2999 -0.9 -2.0 probable tail fiber assembly protein compare
Pf6N2E2_3171 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_1091 -0.8 -2.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_640 -0.8 -1.9 Outer membrane TonB-dependent transducer VreA of trans-envelope signaling system compare
Pf6N2E2_1448 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_2723 -0.8 -3.6 YcgN (Fragment) compare
Pf6N2E2_1027 -0.8 -1.6 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_5944 -0.8 -3.6 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_5088 -0.8 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1157 -0.8 -1.9 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_5320 -0.8 -3.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_2519 -0.8 -0.9 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_623 -0.8 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_2496 -0.8 -1.4 FIG00956575: hypothetical protein compare
Pf6N2E2_988 -0.8 -2.3 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_1129 -0.8 -2.7 Sensor histidine kinase compare
Pf6N2E2_2501 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_4969 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_5967 -0.8 -1.9 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_2098 -0.8 -2.5 heme uptake regulator compare
Pf6N2E2_1089 -0.8 -1.1 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_3461 -0.8 -1.5 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_699 -0.8 -1.5 Heme d1 biosynthesis protein NirG compare
Pf6N2E2_1722 -0.8 -2.1 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) compare
Pf6N2E2_446 -0.8 -3.9 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_2844 -0.8 -2.7 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_350 -0.8 -1.7 Gfa-like protein compare
Pf6N2E2_3257 -0.8 -2.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5444 -0.8 -2.0 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_1385 -0.8 -1.1 FIG00956261: hypothetical protein compare
Pf6N2E2_3100 -0.8 -1.9 FIG00953063: hypothetical protein compare
Pf6N2E2_43 -0.8 -3.0 Histidine permease YuiF compare
Pf6N2E2_3807 -0.8 -2.5 Histidine utilization repressor compare
Pf6N2E2_1165 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_1279 -0.8 -2.1 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_1796 -0.8 -1.8 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_3770 -0.7 -1.5 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_620 -0.7 -3.4 BatD compare
Pf6N2E2_2106 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_1718 -0.7 -1.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_3612 -0.7 -1.1 HflK protein compare
Pf6N2E2_612 -0.7 -1.4 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
Pf6N2E2_1545 -0.7 -2.3 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_624 -0.7 -2.3 hypothetical protein PA3071 compare
Pf6N2E2_3282 -0.7 -1.4 FIG005080: Possible exported protein compare
Pf6N2E2_2313 -0.7 -1.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3847 -0.7 -2.3 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3252 -0.7 -3.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_891 -0.7 -2.0 4-oxalocrotonate tautomerase compare
Pf6N2E2_3258 -0.7 -2.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2707 -0.7 -1.7 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_6140 -0.7 -0.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_40 -0.7 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3260 -0.7 -2.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2266 -0.7 -1.7 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_5527 -0.7 -1.3 Cold shock protein CspC compare
Pf6N2E2_2739 -0.7 -2.4 UPF0339 protein NMA1193/NMA1859 compare
Pf6N2E2_2156 -0.7 -1.6 Putative polyketide synthase (Fragment) compare
Pf6N2E2_625 -0.7 -2.6 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_1783 -0.7 -1.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2527 -0.7 -2.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_5746 -0.7 -1.8 Cobalamin synthase compare
Pf6N2E2_4535 -0.7 -3.1 Type III secretion inner membrane protein (YscQ,homologous to flagellar export components) compare
Pf6N2E2_1499 -0.7 -1.3 ABC transporter amino acid-binding protein compare
Pf6N2E2_2300 -0.7 -1.7 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_3529 -0.7 -0.7 Toxin A compare
Pf6N2E2_2127 -0.7 -1.9 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_1403 -0.7 -2.0 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_1492 -0.7 -1.8 No significant database matches compare
Pf6N2E2_777 -0.7 -2.9 FMN-dependent NADH-azoreductase compare
Pf6N2E2_3221 -0.7 -2.1 FIG00352444: hypothetical protein compare
Pf6N2E2_3591 -0.7 -2.2 NUDIX hydrolase compare
Pf6N2E2_2792 -0.7 -1.4 Antitoxin 1 compare
Pf6N2E2_1028 -0.7 -1.4 Transcriptional regulator, LysR family compare
Pf6N2E2_6087 -0.7 -1.3 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_5321 -0.7 -3.7 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_5640 -0.7 -1.4 FIG00955597: hypothetical protein compare
Pf6N2E2_2866 -0.7 -2.8 FIG00964490: hypothetical protein compare
Pf6N2E2_2225 -0.7 -1.7 FIG00953489: hypothetical protein compare
Pf6N2E2_5671 -0.7 -1.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_1287 -0.7 -1.6 Mobile element protein compare
Pf6N2E2_734 -0.7 -2.0 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_601 -0.7 -2.2 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_1444 -0.7 -1.4 Transcriptional regulator, LysR family compare
Pf6N2E2_2756 -0.7 -3.4 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_2261 -0.7 -2.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_3271 -0.6 -1.5 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_282 -0.6 -1.0 GNAT family acetyltransferase YjcF compare
Pf6N2E2_4803 -0.6 -1.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2064 -0.6 -1.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_2253 -0.6 -1.8 hypothetical protein compare
Pf6N2E2_5155 -0.6 -1.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4204 -0.6 -0.9 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_1334 -0.6 -2.7 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_4558 -0.6 -2.0 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf6N2E2_728 -0.6 -1.3 Nitrate/nitrite transporter compare
Pf6N2E2_5641 -0.6 -3.4 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Pf6N2E2_2835 -0.6 -1.4 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_2717 -0.6 -2.1 putative cytoplasmic protein compare
Pf6N2E2_3074 -0.6 -0.7 FIG00960973: hypothetical protein compare
Pf6N2E2_3613 -0.6 -3.8 GTP-binding protein HflX compare
Pf6N2E2_4418 -0.6 -0.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_86 -0.6 -2.4 FIG022160: hypothetical toxin compare
Pf6N2E2_5768 -0.6 -1.6 DNA recombination-dependent growth factor C compare


Specific Phenotypes

For 6 genes in this experiment

For stress Sodium arsenate dibasic heptahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Sodium arsenate dibasic heptahydrate across organisms