Experiment set5IT056 for Agrobacterium fabrum C58

Compare to:

R2A with Cisplatin 0.0016 mM

200 most important genes:

  gene name fitness t score description  
Atu1129 -6.1 -8.4 excinuclease ABC chain C compare
Atu1513 -5.4 -7.3 ABC excinuclease subunit A compare
Atu1039 -5.2 -5.7 DNA repair protein RecO compare
Atu0073 -5.0 -9.6 recF-like protein conserved
Atu2057 -4.7 -3.2 DNA helicase II compare
Atu0093 -4.7 -5.5 Recombination protein compare
Atu0494 -3.8 -17.4 large atp-dependant helicase-related protein conserved
Atu1874 -3.8 -2.6 RecA protein compare
Atu0495 -3.2 -8.3 hypothetical protein conserved
Atu2001 -2.6 -5.8 excinuclease ABC subunit B compare
Atu4773 -2.1 -3.2 two component response regulator compare
Atu0434 -2.0 -3.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3469 -2.0 -3.1 phosphoglyceromutase compare
Atu1687 -1.9 -5.0 anthranilate phosphoribosyltransferase compare
Atu2083 -1.9 -2.8 DNA repair protein RecN compare
Atu2289 -1.9 -10.7 anthranilate synthase component I and II compare
Atu1163 -1.8 -3.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0103 -1.8 -9.0 penicillin-binding protein compare
Atu1077 -1.6 -4.1 DNA repair protein compare
Atu0039 -1.6 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu1688 -1.6 -4.6 indole-3-glycerol-phosphate synthase compare
Atu1780 -1.6 -9.1 ATP-dependent DNA helicase conserved
Atu2728 -1.6 -5.9 beta (1-->2) glucan export ATP-binding protein compare
Atu0839 -1.4 -8.2 hypothetical protein conserved
Atu4616 -1.4 -2.4 dTDP-4-dehydrorhamnose reductase compare
Atu1891 -1.3 -3.9 cobalamin biosynthesis protein compare
Atu0399 -1.3 -4.5 dihydroorotase compare
Atu2439 -1.2 -1.5 hypothetical protein compare
Atu0361 -1.2 -3.5 transcriptional regulator compare
Atu0486 -1.2 -5.0 dihydroorotate dehydrogenase compare
Atu0840 -1.2 -7.8 ATP-dependent DNA ligase conserved
Atu2270 -1.2 -1.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu4567 -1.1 -5.3 ROK family transcriptional regulator compare
Atu5451 -1.1 -1.8 hypothetical protein compare
Atu2710 -1.0 -5.9 hypothetical protein compare
Atu1542 -1.0 -4.9 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1308 -1.0 -3.5 aspartate carbamoyl transferase catalytic subunit compare
Atu2807 -1.0 -5.4 cob(I)alamin adenosyltransferase compare
Atu2802 -1.0 -4.2 precorrin-8X methylmutase compare
Atu0400 -1.0 -2.5 orotate phosphoribosyltransferase compare
Atu1028 -1.0 -2.3 hypothetical protein compare
Atu0030 -1.0 -1.6 phosphocarrier protein HPr compare
Atu0346 -0.9 -2.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1307 -0.9 -3.4 dihydroorotase compare
Atu2684 -0.9 -1.2 hypothetical protein compare
Atu2026 -0.9 -3.4 exodeoxyribonuclease V compare
Atu1686 -0.9 -6.6 peptidyl-prolyl cis-trans isomerse D compare
Atu0184 -0.9 -1.4 glucokinase compare
Atu6098 -0.9 -0.9 transcriptional regulator, HTH family compare
Atu0598 -0.9 -4.8 phosphogluconate dehydratase compare
Atu2804 -0.9 -5.7 cobaltochelatase subunit compare
Atu2077 -0.8 -2.1 DNA polymerase III, epsilon subunit compare
Atu0031 -0.8 -1.4 PTS system, IIA component compare
Atu2801 -0.8 -3.1 precorrin-2 C20 methyltransferase compare
Atu3755 -0.8 -3.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0435 -0.8 -2.0 tRNA-Gly compare
Atu0566 -0.8 -1.6 hypothetical protein compare
Atu1845 -0.8 -2.1 phosphoribosylformylglycinamidine synthase I compare
Atu1503 -0.8 -1.1 hypothetical protein compare
Atu1021 -0.8 -2.3 outer membrane protein compare
Atu4072 -0.8 -1.9 nodulation protein N compare
Atu4711 -0.8 -3.3 two component sensor kinase compare
Atu0298 -0.8 -3.7 orotidine 5 compare
Atu2640 -0.8 -3.7 hypothetical protein compare
Atu1535 -0.8 -1.5 cytochrome c oxidase, FixQ chain compare
Atu3634 -0.8 -3.8 penicillin-binding protein dacf precursor compare
Atu0977 -0.8 -2.6 serine protease DO-like protease compare
Atu2036 -0.8 -5.6 acetolactate synthase III, large subunit compare
Atu1359 -0.8 -1.0 dnaK deletion suppressor protein compare
Atu2209 -0.8 -2.4 pyrroline-5-carboxylate reductase compare
Atu2125 -0.8 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu0726 -0.7 -4.4 ring hydroxylating dioxygenase, alpha-subunit compare
Atu4166 -0.7 -0.9 UDP-glucose 4-epimerase compare
Atu2113 -0.7 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu0677 -0.7 -2.3 hypothetical protein compare
Atu4471 -0.7 -4.8 ABC transporter substrate-binding protein compare
Atu4618 -0.7 -4.7 dTDP-rhamnose-3,5-epimerase compare
Atu3730 -0.7 -0.9 hypothetical protein compare
Atu2799 -0.7 -2.4 precorrin-6x reductase compare
Atu2793 -0.7 -2.5 cobyrinic acid a,c-diamide synthase compare
Atu3698 -0.7 -3.7 thioredoxin compare
Atu1778 -0.7 -5.2 transcription-repair coupling factor compare
Atu2795 -0.7 -3.2 cobalamin biosynthetic protein compare
Atu0971 -0.7 -3.1 two component sensor kinase compare
Atu3353 -0.7 -4.0 mannose-1-phosphate guanylyltransferase compare
Atu0386 -0.7 -1.5 hypothetical protein compare
Atu2040 -0.7 -3.1 phosphoserine phosphatase compare
Atu2809 -0.7 -4.0 cobalamin biosynthesis protein compare
Atu8202 -0.7 -2.3 hypothetical protein compare
Atu2267 -0.7 -3.4 hypothetical protein compare
Atu0876 -0.7 -0.9 superoxide dismutase compare
Atu3763 -0.7 -1.4 hypothetical protein compare
Atu0049 -0.6 -2.2 hypothetical protein compare
Atu0322 -0.6 -2.8 enoyl CoA hydratase compare
Atu4896 -0.6 -1.5 acetyltransferase compare
Atu2650 -0.6 -4.7 glycerol-3-phosphate dehydrogenase compare
Atu0565 -0.6 -1.9 hypothetical protein compare
Atu5470 -0.6 -1.5 hypothetical protein compare
Atu2803 -0.6 -2.5 Cobalamin biosynthesis associated protein compare
Atu2796 -0.6 -3.6 precorrin-4 C11-methyltransferase compare
Atu0025 -0.6 -1.2 hypothetical protein compare
Atu0886 -0.6 -1.3 hypothetical protein compare
Atu0401 -0.6 -2.4 fructokinase compare
Atu1714 -0.6 -1.3 exonuclease III compare
Atu2073 -0.6 -2.5 membrane protein compare
Atu6036 -0.6 -1.1 entry-exclusion protein compare
Atu2554 -0.6 -0.7 lysyl-tRNA synthetase compare
Atu8025 -0.6 -1.2 hypothetical protein compare
Atu3481 -0.6 -2.5 enoyl-CoA hydratase compare
Atu0340 -0.6 -0.8 SAM dependent methyltransferase compare
Atu0647 -0.6 -2.6 phosphoribosylamine--glycine ligase compare
Atu0205 -0.6 -4.5 methylmalonate-semialdehyde dehydrogenase compare
Atu1534 -0.6 -2.2 cytochrome-c oxidase, FixP chain compare
Atu1075 -0.6 -2.9 amidophosphoribosyltransferase compare
Atu4617 -0.6 -4.6 dTDP-D-glucose-4,6-dehydratase compare
Atu4075 -0.6 -3.4 glycogen synthase compare
Atu2808 -0.6 -3.1 cobyric acid synthase compare
Atu4470 -0.6 -3.3 iron ABC transporter ATPase compare
Atu0972 -0.6 -2.8 lipA protein compare
Atu2692 -0.6 -2.1 intracellular septation protein compare
Atu4881 -0.6 -3.3 hypothetical protein compare
Atu4217 -0.6 -1.1 TetR family transcriptional regulator compare
Atu1030 -0.6 -0.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1904 -0.6 -1.4 transcriptional regulator compare
Atu2617 -0.6 -1.7 chemotaxis protein compare
Atu2794 -0.6 -2.9 uroporphyrin-III C-methyltransferase compare
Atu4613 -0.6 -4.2 glycosyltransferase compare
Atu3739 -0.6 -1.4 phosphoglycerate kinase compare
Atu4674 -0.6 -4.1 GntR family transcriptional regulator compare
Atu2207 -0.6 -2.8 two component sensor kinase compare
Atu5160 -0.6 -1.6 transcriptional regulator protein compare
Atu0883 -0.5 -1.5 hypothetical protein compare
Atu2427 -0.5 -3.3 ABC transporter, membrane spanning protein compare
Atu3608 -0.5 -3.4 hypothetical protein compare
Atu1110 -0.5 -1.1 cytosol aminopeptidase compare
Atu1850 -0.5 -1.4 phosphoribosylformylglycinamidine synthetase II compare
Atu1646 -0.5 -3.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu6114 -0.5 -1.4 hypothetical protein compare
Atu1629 -0.5 -0.9 transcriptional regulator, ArsR family compare
Atu2789 -0.5 -2.5 hypothetical protein compare
Atu2805 -0.5 -3.1 cobalamin synthesis protein compare
Atu2237 -0.5 -2.5 cytochrome c1 compare
Atu1810 -0.5 -0.7 hypothetical protein compare
Atu1647 -0.5 -3.6 ABC transporter, membrane spanning protein compare
Atu2798 -0.5 -2.5 precorrin-6y methyltransferase compare
Atu2537 -0.5 -2.9 transcriptional regulator, TetR family compare
Atu5440 -0.5 -2.8 hypothetical protein compare
Atu0749 -0.5 -2.1 biotin synthesis BioY protein compare
Atu0062 -0.5 -2.6 transcriptional regulator, ROK family compare
Atu0517 -0.5 -4.2 Chemotaxis protein histidine kinase compare
Atu1124 -0.5 -2.1 hypothetical protein compare
Atu0189 -0.5 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu0190 -0.5 -3.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2790 -0.5 -1.4 3-isopropylmalate dehydratase, small subunit compare
Atu0477 -0.5 -0.5 hypothetical protein compare
Atu3032 -0.5 -1.4 hypothetical protein compare
Atu2239 -0.5 -1.5 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1141 -0.5 -2.2 Phosphoribosylglycinamide synthetase compare
Atu0727 -0.5 -3.1 ferredoxin I compare
Atu1447 -0.5 -1.3 two component sensor kinase compare
Atu5125 -0.5 -2.2 GntR family transcriptional regulator compare
Atu4897 -0.5 -1.2 hypothetical protein compare
Atu1219 -0.5 -0.3 hypothetical protein compare
Atu3293 -0.5 -1.9 D-amino acid dehydrogenase small subunit compare
Atu2464 -0.5 -1.3 formyltetrahydrofolate deformylase compare
Atu3095 -0.5 -1.3 hypothetical protein compare
Atu1529 -0.5 -2.1 nitrogen fixation protein FixH compare
Atu0319 -0.5 -0.9 ubiquinone biosynthesis protein compare
Atu3485 -0.5 -3.2 short chain dehydrogenase compare
Atu3603 -0.5 -1.4 two component response regulator compare
Atu1902 -0.5 -1.7 transketolase compare
Atu8191 -0.5 -1.3 hypothetical protein compare
Atu5443 -0.5 -2.9 TetR family transcriptional regulator compare
Atu4615 -0.5 -3.6 glucose-1-phosphate thymidylyltransferase compare
Atu4446 -0.5 -2.8 hypothetical protein compare
Atu2052 -0.5 -2.8 hypothetical protein compare
Atu1739 -0.5 -1.4 permease compare
Atu4514 -0.5 -2.6 RpiR family transcriptional regulator compare
Atu1606 -0.5 -2.7 methionine aminopeptidase compare
Atu4502 -0.5 -2.0 cobalamin synthesis protein compare
Atu1515 -0.5 -1.9 hypothetical protein compare
Atu1844 -0.5 -1.6 Phosphoribosylformylglycinamidine synthetase compare
Atu0516 -0.5 -2.2 chemotaxis receiver protein compare
Atu2832 -0.5 -1.5 tRNA modification GTPase compare
Atu1774 -0.5 -2.0 ABC transporter, substrate binding protein (peptide) compare
Atu3864 -0.5 -2.1 hypothetical protein compare
Atu4451 -0.5 -3.2 mannitol 2-dehydrogenase compare
Atu1644 -0.5 -2.0 hypothetical protein compare
Atu5142 -0.5 -1.3 hypothetical protein compare
Atu2183 -0.5 -2.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0152 -0.5 -1.1 hypothetical protein compare
Atu4205 -0.5 -2.2 TetR family transcriptional regulator compare
Atu4873 -0.4 -2.6 TetR family transcriptional regulator compare
Atu1442 -0.4 -2.1 competence/damage-inducible protein CinA compare
Atu3466 -0.4 -1.1 ArsR family transcriptional regulator compare
Atu1779 -0.4 -1.2 hypothetical protein compare
Atu3913 -0.4 -2.6 biotin carboxylase compare
Atu2733 -0.4 -1.7 hypothetical protein compare
Atu0043 -0.4 -1.0 imidazoleglycerol-phosphate dehydratase compare
Atu0422 -0.4 -0.9 ABC transporter, membrane spanning protein compare


Specific Phenotypes

For 6 genes in this experiment

For stress Cisplatin in Agrobacterium fabrum C58

For stress Cisplatin across organisms