Experiment set5IT051 for Agrobacterium fabrum C58

Compare to:

R2A with Nalidixic acid sodium salt 0.02 mM

200 most important genes:

  gene name fitness t score description  
Atu0269 -5.0 -6.0 exodeoxyribonuclease VII large subunit compare
Atu4217 -4.4 -4.1 TetR family transcriptional regulator compare
Atu3469 -4.4 -3.0 phosphoglyceromutase compare
Atu2083 -4.3 -5.9 DNA repair protein RecN compare
Atu4149 -4.3 -11.0 UDP-glucose 6-dehydrogenase compare
Atu2590 -4.2 -10.2 hypothetical protein compare
Atu2582 -3.9 -7.5 UDP-glucose/GDP-mannose dehydrogenase compare
Atu1077 -3.8 -5.1 DNA repair protein compare
Atu2591 -3.7 -8.3 glucosyltransferase compare
Atu2584 -3.6 -5.5 hypothetical protein compare
Atu2592 -3.6 -6.4 hypothetical protein compare
Atu2577 -3.4 -18.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu0017 -3.4 -2.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2583 -3.3 -11.9 glycosyltransferase compare
Atu2585 -3.0 -5.4 hypothetical protein compare
Atu1874 -2.9 -3.4 RecA protein compare
Atu4616 -2.6 -2.6 dTDP-4-dehydrorhamnose reductase compare
Atu0434 -2.5 -2.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3730 -2.5 -2.5 hypothetical protein compare
Atu1149 -2.4 -2.5 adenylate cyclase compare
Atu0971 -2.4 -5.6 two component sensor kinase compare
Atu0103 -2.3 -9.5 penicillin-binding protein compare
Atu4148 -2.3 -6.1 UDP-glucuronic acid epimerase compare
Atu2483 -2.3 -17.8 AcrB/AcrD/AcrF family protein conserved
Atu3739 -2.2 -3.6 phosphoglycerate kinase compare
Atu2482 -2.2 -12.2 HlyD family secretion protein conserved
Atu4317 -2.1 -5.5 TetR family transcriptional regulator compare
Atu2207 -1.8 -4.1 two component sensor kinase compare
Atu0723 -1.8 -2.5 FAD dependent oxidoreductase compare
Atu2728 -1.8 -5.2 beta (1-->2) glucan export ATP-binding protein compare
Atu2710 -1.6 -6.7 hypothetical protein compare
Atu0040 -1.5 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1891 -1.4 -3.1 cobalamin biosynthesis protein compare
Atu3634 -1.4 -5.8 penicillin-binding protein dacf precursor compare
Atu3754 -1.4 -5.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1308 -1.4 -5.8 aspartate carbamoyl transferase catalytic subunit compare
Atu2113 -1.3 -3.3 N-acetylmuramoyl-L-alanine amidase compare
Atu2802 -1.3 -6.7 precorrin-8X methylmutase compare
Atu4166 -1.3 -2.6 UDP-glucose 4-epimerase compare
Atu4617 -1.3 -8.2 dTDP-D-glucose-4,6-dehydratase compare
Atu3598 -1.3 -2.1 thiol:disulfide interchange protein compare
Atu2480 -1.2 -6.7 transcriptional regulator, LysR family compare
Atu4613 -1.2 -8.4 glycosyltransferase compare
Atu2057 -1.2 -1.8 DNA helicase II compare
Atu4072 -1.2 -2.9 nodulation protein N compare
Atu1028 -1.2 -1.6 hypothetical protein compare
Atu4773 -1.2 -2.4 two component response regulator compare
Atu1644 -1.2 -4.6 hypothetical protein compare
Atu4615 -1.2 -6.9 glucose-1-phosphate thymidylyltransferase compare
Atu0346 -1.2 -3.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2183 -1.1 -5.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2787 -1.1 -1.5 hypothetical protein compare
Atu1359 -1.1 -1.4 dnaK deletion suppressor protein compare
Atu3353 -1.1 -7.6 mannose-1-phosphate guanylyltransferase compare
Atu3593 -1.1 -4.5 hypothetical protein compare
Atu2193 -1.1 -1.2 hypothetical protein compare
Atu1030 -1.1 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1646 -1.1 -6.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu5451 -1.1 -1.3 hypothetical protein compare
Atu1307 -1.0 -3.6 dihydroorotase compare
Atu4618 -1.0 -6.9 dTDP-rhamnose-3,5-epimerase compare
Atu1021 -1.0 -2.7 outer membrane protein compare
Atu4614 -1.0 -6.9 glycosyltransferase compare
Atu1687 -1.0 -4.3 anthranilate phosphoribosyltransferase compare
Atu0687 -1.0 -1.6 hypothetical protein compare
Atu2439 -1.0 -1.0 hypothetical protein compare
Atu3468 -1.0 -1.0 hypothetical protein compare
Atu1163 -1.0 -1.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0486 -1.0 -4.6 dihydroorotate dehydrogenase compare
Atu2808 -1.0 -5.3 cobyric acid synthase compare
Atu2205 -0.9 -4.0 transcriptional regulator, MarR family compare
Atu1542 -0.9 -3.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1688 -0.9 -3.2 indole-3-glycerol-phosphate synthase compare
Atu2804 -0.9 -7.1 cobaltochelatase subunit compare
Atu2650 -0.9 -6.6 glycerol-3-phosphate dehydrogenase compare
Atu0422 -0.9 -1.9 ABC transporter, membrane spanning protein compare
Atu0354 -0.9 -1.9 ferric uptake regulator compare
Atu0972 -0.9 -3.5 lipA protein compare
Atu2289 -0.9 -5.8 anthranilate synthase component I and II compare
Atu3466 -0.9 -2.3 ArsR family transcriptional regulator compare
Atu2036 -0.9 -6.0 acetolactate synthase III, large subunit compare
Atu3706 -0.9 -4.7 D-3-phosphoglycerate dehydrogenase compare
Atu3311 -0.9 -7.2 phosphomannose isomerase compare
Atu0043 -0.9 -1.4 imidazoleglycerol-phosphate dehydratase compare
Atu1447 -0.9 -2.8 two component sensor kinase compare
Atu6045 -0.9 -1.8 replication protein C compare
Atu2803 -0.8 -3.2 Cobalamin biosynthesis associated protein compare
Atu0647 -0.8 -3.5 phosphoribosylamine--glycine ligase compare
Atu1446 -0.8 -2.1 two component response regulator compare
Atu1645 -0.8 -4.2 ABC transporter, substrate binding protein compare
Atu2796 -0.8 -4.5 precorrin-4 C11-methyltransferase compare
Atu8180 -0.8 -2.9 hypothetical protein compare
Atu4108 -0.8 -5.4 ribonuclease D compare
Atu2809 -0.8 -4.9 cobalamin biosynthesis protein compare
Atu1774 -0.8 -4.0 ABC transporter, substrate binding protein (peptide) compare
Atu1647 -0.8 -5.2 ABC transporter, membrane spanning protein compare
Atu0331 -0.8 -1.7 sigma-54 modulation protein compare
Atu0777 -0.8 -0.9 hypothetical protein compare
Atu4567 -0.8 -4.8 ROK family transcriptional regulator compare
Atu0298 -0.8 -3.3 orotidine 5 compare
Atu2237 -0.8 -2.9 cytochrome c1 compare
Atu0361 -0.7 -1.7 transcriptional regulator compare
Atu3755 -0.7 -2.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1619 -0.7 -3.1 protein-export membrane protein SECG compare
Atu3481 -0.7 -3.7 enoyl-CoA hydratase compare
Atu2798 -0.7 -2.8 precorrin-6y methyltransferase compare
Atu2805 -0.7 -4.5 cobalamin synthesis protein compare
Atu1223 -0.7 -1.1 hypothetical protein compare
Atu0039 -0.7 -1.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu1606 -0.7 -3.8 methionine aminopeptidase compare
Atu8118 -0.7 -3.0 putative universal stress protein compare
Atu4075 -0.7 -4.0 glycogen synthase compare
Atu1530 -0.7 -5.0 nitrogen fixation protein FixG compare
Atu2040 -0.7 -3.8 phosphoserine phosphatase compare
Atu4674 -0.7 -4.2 GntR family transcriptional regulator compare
Atu0727 -0.7 -4.6 ferredoxin I compare
Atu2801 -0.7 -3.2 precorrin-2 C20 methyltransferase compare
Atu4873 -0.7 -3.5 TetR family transcriptional regulator compare
Atu2795 -0.7 -3.1 cobalamin biosynthetic protein compare
Atu1845 -0.7 -2.3 phosphoribosylformylglycinamidine synthase I compare
Atu2464 -0.7 -1.7 formyltetrahydrofolate deformylase compare
Atu2793 -0.7 -2.7 cobyrinic acid a,c-diamide synthase compare
Atu2293 -0.7 -2.7 hypothetical protein compare
Atu2379 -0.7 -4.7 phosphomannomutase compare
Atu2052 -0.7 -3.8 hypothetical protein compare
Atu0421 -0.7 -1.0 ABC transporter, membrane spanning protein compare
Atu0726 -0.7 -3.8 ring hydroxylating dioxygenase, alpha-subunit compare
Atu2807 -0.6 -2.1 cob(I)alamin adenosyltransferase compare
Atu2238 -0.6 -3.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4205 -0.6 -3.6 TetR family transcriptional regulator compare
Atu0565 -0.6 -2.6 hypothetical protein compare
Atu0510 -0.6 -4.6 pH adaption potassium efflux system protein compare
Atu1534 -0.6 -3.6 cytochrome-c oxidase, FixP chain compare
Atu1513 -0.6 -3.1 ABC excinuclease subunit A compare
Atu1333 -0.6 -1.6 outer membrane protein compare
Atu2368 -0.6 -0.7 hypothetical protein compare
Atu0340 -0.6 -1.5 SAM dependent methyltransferase compare
Atu3915 -0.6 -2.0 MerR family transcriptional regulator compare
Atu0756 -0.6 -2.5 phosphoglycerate mutase compare
Atu2349 -0.6 -1.5 hypothetical protein compare
Atu3579 -0.6 -2.1 lactoylglutathione lyase compare
Atu4711 -0.6 -2.8 two component sensor kinase compare
Atu3482 -0.6 -3.6 pantoate--beta-alanine ligase compare
Atu1219 -0.6 -0.7 hypothetical protein compare
Atu0501 -0.6 -4.2 acyl-CoA dehydrogenase compare
Atu1355 -0.6 -3.1 hypothetical protein compare
Atu0030 -0.6 -1.0 phosphocarrier protein HPr compare
Atu3486 -0.6 -1.5 DeoR family transcriptional regulator compare
Atu1775 -0.6 -3.7 polyketide biosynthesis associated protein compare
Atu1141 -0.6 -2.5 Phosphoribosylglycinamide synthetase compare
Atu8099 -0.6 -2.2 hypothetical protein compare
Atu1620 -0.6 -3.7 triosephosphate isomerase compare
Atu8190 -0.6 -2.0 hypothetical protein compare
Atu2692 -0.6 -2.3 intracellular septation protein compare
Atu2127 -0.6 -4.0 L-carnitine dehydratase compare
Atu0976 -0.6 -1.1 cycL protein compare
Atu0488 -0.6 -2.1 hypothetical protein compare
Atu8096 -0.6 -1.3 hypothetical protein compare
Atu1536 -0.6 -2.1 cytochrome C oxidase, FixO chain compare
Atu0977 -0.6 -3.1 serine protease DO-like protease compare
Atu2799 -0.5 -1.7 precorrin-6x reductase compare
Atu1588 -0.5 -3.7 homoserine dehydrogenase compare
Atu4346 -0.5 -2.7 hypothetical protein compare
Atu3496 -0.5 -2.7 hypothetical protein compare
Atu1528 -0.5 -3.6 nitrogen fixation protein FixI compare
Atu0185 -0.5 -1.5 methylglyoxal synthase compare
Atu4608 -0.5 -4.5 hypothetical protein compare
Atu0184 -0.5 -1.6 glucokinase compare
Atu0162 -0.5 -1.5 biopolymer transport protein compare
Atu4214 -0.5 -1.6 cold shock protein compare
Atu0677 -0.5 -1.1 hypothetical protein compare
Atu1679 -0.5 -1.9 peptidyl prolyl cis-trans isomerase compare
Atu4053 -0.5 -1.0 succinoglycan biosynthesis protein compare
Atu0115 -0.5 -0.7 hypothetical protein compare
Atu1327 -0.5 -2.2 NADH-ubiquinone oxidoreductase compare
Atu0025 -0.5 -0.7 hypothetical protein compare
Atu3963 -0.5 -2.6 GntR family transcriptional regulator compare
Atu3286 -0.5 -2.1 ABC transporter permease compare
Atu0189 -0.5 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu1285 -0.5 -2.6 metal dependent hydrolase compare
Atu1968 -0.5 -1.3 hypothetical protein compare
Atu0762 -0.5 -1.8 hypothetical protein compare
Atu8012 -0.5 -0.7 hypothetical protein compare
Atu3471 -0.5 -4.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
Atu4896 -0.5 -1.4 acetyltransferase compare
Atu0399 -0.5 -2.2 dihydroorotase compare
Atu0062 -0.5 -3.0 transcriptional regulator, ROK family compare
Atu0524 -0.5 -3.1 transcriptional regulator, LuxR family compare
Atu1075 -0.5 -3.2 amidophosphoribosyltransferase compare
Atu2588 -0.5 -2.6 ABC transporter, membrane spanning protein (oligopeptide) compare
Atu2616 -0.5 -3.5 hypothetical protein compare
Atu1468 -0.5 -2.5 hypothetical protein compare
Atu2063 -0.5 -1.4 hypothetical protein compare
Atu8087 -0.5 -0.5 putative peptidoglycan binding protein compare
Atu3668 -0.5 -1.1 siderophore biosynthesis protein compare
Atu3071 -0.5 -2.4 hypothetical protein compare
Atu0904 -0.5 -1.4 hypothetical protein compare
Atu2267 -0.5 -2.1 hypothetical protein compare
Atu4609 -0.5 -3.0 glycosyltransferase compare
Atu4610 -0.5 -3.4 sugar nucleotide epimerase/dehydratase compare


Specific Phenotypes

For 4 genes in this experiment

For stress Nalidixic acid sodium salt in Agrobacterium fabrum C58

For stress Nalidixic acid sodium salt across organisms