Experiment set5IT040 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -4.7 -4.6 3-isopropylmalate dehydratase compare
AO353_12070 -4.5 -10.9 imidazoleglycerol-phosphate dehydratase compare
AO353_07220 -4.5 -10.0 anthranilate synthase compare
AO353_12085 -4.4 -10.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_12520 -4.4 -13.8 glutamate synthase compare
AO353_05115 -4.4 -12.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_13515 -4.3 -5.1 Urease (EC 3.5.1.5) (from data) conserved
AO353_08185 -4.3 -12.7 methionine biosynthesis protein MetW compare
AO353_13070 -4.3 -10.3 phosphoserine phosphatase compare
AO353_20695 -4.3 -8.1 O-succinylhomoserine sulfhydrylase compare
AO353_13160 -4.2 -2.9 membrane protease HflC compare
AO353_13520 -4.2 -7.5 urease accessory protein UreD conserved
AO353_20620 -4.2 -9.2 isopropylmalate isomerase compare
AO353_12090 -4.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
AO353_13165 -4.1 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_07210 -4.1 -6.8 indole-3-glycerol-phosphate synthase compare
AO353_02075 -4.1 -13.4 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_12515 -4.0 -25.4 glutamate synthase compare
AO353_20540 -4.0 -9.3 aromatic amino acid aminotransferase compare
AO353_13410 -4.0 -10.0 urease accessory protein UreE conserved
AO353_07230 -4.0 -20.1 anthranilate synthase compare
AO353_14505 -3.9 -15.0 ketol-acid reductoisomerase compare
AO353_08475 -3.9 -12.0 phosphoserine phosphatase compare
AO353_12500 -3.9 -2.7 shikimate kinase compare
AO353_12075 -3.9 -10.3 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20665 -3.9 -12.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_05110 -3.8 -13.7 histidinol dehydrogenase compare
AO353_08345 -3.8 -11.2 dihydroxy-acid dehydratase compare
AO353_00310 -3.8 -11.9 transaldolase compare
AO353_08180 -3.8 -15.8 homoserine O-acetyltransferase compare
AO353_10710 -3.7 -5.7 tryptophan synthase subunit beta compare
AO353_22945 -3.6 -16.1 glycogen branching protein compare
AO353_14495 -3.6 -13.5 acetolactate synthase 3 catalytic subunit compare
AO353_07215 -3.6 -10.1 anthranilate phosphoribosyltransferase compare
AO353_09000 -3.6 -6.9 argininosuccinate lyase compare
AO353_16450 -3.6 -16.3 protein-PII uridylyltransferase compare
AO353_02070 -3.5 -9.2 prephenate dehydratase compare
AO353_13400 -3.4 -11.7 urease accessory protein UreG conserved
AO353_14400 -3.4 -6.0 Fis family transcriptional regulator compare
AO353_12115 -3.4 -4.0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_12145 -3.3 -6.7 nitrogen regulation protein NR(I) compare
AO353_20635 -3.3 -14.0 3-isopropylmalate dehydrogenase compare
AO353_13495 -3.3 -12.7 Urease (EC 3.5.1.5) (from data) conserved
AO353_12150 -3.3 -7.5 histidine kinase compare
AO353_03580 -3.2 -4.9 ATP-dependent DNA helicase RuvB compare
AO353_12360 -3.2 -11.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_02710 -3.2 -15.4 (p)ppGpp synthetase compare
AO353_08685 -3.2 -10.4 N-acetylglutamate synthase compare
AO353_07155 -3.1 -9.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_04155 -3.1 -14.5 ornithine carbamoyltransferase compare
AO353_10025 -3.0 -16.6 pyruvate carboxylase subunit B compare
AO353_03360 -3.0 -10.6 glucose-6-phosphate dehydrogenase compare
AO353_06495 -2.9 -6.6 gamma-glutamyl phosphate reductase compare
AO353_08015 -2.9 -10.1 5,10-methylenetetrahydrofolate reductase compare
AO353_04105 -2.9 -10.9 argininosuccinate synthase compare
AO353_09240 -2.9 -4.0 acetylglutamate kinase compare
AO353_13395 -2.9 -4.4 protein hupE compare
AO353_10670 -2.9 -8.3 shikimate dehydrogenase compare
AO353_14500 -2.8 -8.8 acetolactate synthase 3 regulatory subunit compare
AO353_08510 -2.7 -7.4 3-phosphoglycerate dehydrogenase compare
AO353_10035 -2.7 -9.2 LysR family transcriptional regulator compare
AO353_10705 -2.7 -5.9 tryptophan synthase subunit alpha compare
AO353_10030 -2.6 -11.6 pyruvate carboxylase subunit A compare
AO353_14420 -2.6 -6.1 molecular chaperone DnaK compare
AO353_12365 -2.6 -3.3 phosphoribosyl-AMP cyclohydrolase compare
AO353_14115 -2.5 -9.2 gamma-glutamyl kinase compare
AO353_07525 -2.3 -13.5 biotin synthase compare
AO353_24130 -2.3 -4.7 hypothetical protein compare
AO353_05055 -2.3 -5.1 peptidylprolyl isomerase conserved
AO353_15925 -2.2 -8.4 2-isopropylmalate synthase compare
AO353_03020 -2.2 -7.8 arginine N-succinyltransferase compare
AO353_06040 -2.2 -4.9 exodeoxyribonuclease V subunit alpha compare
AO353_02940 -2.1 -2.3 DNA-binding protein compare
AO353_14595 -2.0 -8.8 carbonate dehydratase compare
AO353_08265 -2.0 -7.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_03415 -2.0 -6.2 glucokinase compare
AO353_13405 -2.0 -3.7 urease accessory protein UreF compare
AO353_08780 -2.0 -7.0 5-formyltetrahydrofolate cyclo-ligase compare
AO353_09040 -1.9 -3.2 diaminopimelate epimerase compare
AO353_02685 -1.9 -4.1 phosphoribosylglycinamide formyltransferase compare
AO353_03590 -1.9 -4.0 crossover junction endodeoxyribonuclease RuvC compare
AO353_03970 -1.9 -10.9 diguanylate cyclase compare
AO353_13155 -1.9 -4.8 hypothetical protein compare
AO353_23495 -1.9 -3.2 SAM-dependent methyltransferase compare
AO353_00490 -1.9 -3.4 PasA protein compare
AO353_08165 -1.8 -3.4 pyrroline-5-carboxylate reductase compare
AO353_16940 -1.8 -6.3 deoxycytidine triphosphate deaminase compare
AO353_10445 -1.8 -2.6 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_08885 -1.8 -13.1 polyphosphate kinase compare
AO353_01080 -1.8 -8.3 hypothetical protein compare
AO353_15250 -1.7 -4.5 cytochrome B compare
AO353_06050 -1.7 -7.6 exodeoxyribonuclease V subunit gamma compare
AO353_10455 -1.7 -2.3 tRNA modification GTPase MnmE compare
AO353_14370 -1.7 -7.3 glucose-6-phosphate isomerase compare
AO353_03585 -1.6 -3.1 ATP-dependent DNA helicase RuvA compare
AO353_07075 -1.6 -5.9 elongation factor Tu compare
AO353_04240 -1.5 -3.0 chemotaxis protein CheW compare
AO353_06045 -1.5 -6.9 exodeoxyribonuclease V subunit beta compare
AO353_16530 -1.5 -2.3 ribonuclease HII compare
AO353_08880 -1.5 -2.7 exopolyphosphatase compare
AO353_00825 -1.5 -4.1 porin compare
AO353_04220 -1.5 -4.5 chemotaxis protein CheY compare
AO353_22800 -1.5 -3.2 sulfite reductase compare
AO353_17855 -1.5 -3.0 ribonuclease D compare
AO353_20175 -1.4 -3.5 ATP-dependent Clp protease proteolytic subunit compare
AO353_08485 -1.4 -9.8 threonine dehydratase compare
AO353_07515 -1.4 -2.6 transporter compare
AO353_08045 -1.4 -9.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_00620 -1.4 -2.5 cytochrome C oxidase Cbb3 compare
AO353_15170 -1.4 -2.8 cytochrome D ubiquinol oxidase subunit III compare
AO353_07520 -1.4 -9.0 8-amino-7-oxononanoate synthase compare
AO353_21625 -1.4 -2.8 Fe/S biogenesis protein NfuA compare
AO353_02250 -1.4 -2.0 chorismate synthase compare
AO353_21905 -1.4 -2.2 hypothetical protein compare
AO353_04565 -1.3 -5.5 nucleoid-associated protein compare
AO353_03615 -1.3 -3.4 cold-shock protein compare
AO353_13610 -1.3 -4.6 precorrin isomerase compare
AO353_01915 -1.3 -2.2 GlcG protein compare
AO353_12105 -1.3 -5.4 peptidase S41 compare
AO353_14150 -1.3 -1.8 peptidylprolyl isomerase compare
AO353_13245 -1.3 -7.4 hypothetical protein compare
AO353_18775 -1.3 -5.1 flagellar biosynthesis protein FlhF compare
AO353_04355 -1.3 -2.3 homoserine dehydrogenase compare
AO353_00810 -1.3 -2.8 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) compare
AO353_20095 -1.3 -4.0 histidine kinase compare
AO353_14930 -1.3 -2.4 GntR family transcriptional regulator compare
AO353_03420 -1.3 -3.6 phosphogluconate dehydratase compare
AO353_03245 -1.3 -6.0 permease DsdX compare
AO353_00650 -1.2 -2.8 cytochrome biogenesis protein compare
AO353_01375 -1.2 -5.9 phosphate acyltransferase compare
AO353_02040 -1.2 -2.9 integration host factor subunit beta compare
AO353_07505 -1.2 -6.2 dethiobiotin synthetase compare
AO353_18705 -1.2 -4.7 anti-anti-sigma factor compare
AO353_13640 -1.2 -4.1 histidine kinase compare
AO353_09285 -1.2 -7.0 reactive intermediate/imine deaminase compare
AO353_10780 -1.1 -1.3 DNA-binding protein compare
AO353_00360 -1.1 -3.5 ATPase compare
AO353_11165 -1.1 -6.1 hypothetical protein compare
AO353_13140 -1.1 -3.9 tRNA dimethylallyltransferase compare
AO353_15395 -1.1 -2.8 transcriptional regulator compare
AO353_07355 -1.1 -5.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_17885 -1.1 -1.9 hypothetical protein compare
AO353_05690 -1.1 -2.6 SsrA-binding protein compare
AO353_08470 -1.1 -3.2 RNA pyrophosphohydrolase compare
AO353_05105 -1.1 -6.5 histidinol-phosphate aminotransferase compare
AO353_00700 -1.1 -4.9 Cro/Cl family transcriptional regulator compare
AO353_20185 -1.1 -4.9 DNA-binding protein compare
AO353_09915 -1.0 -5.2 long-chain acyl-CoA thioester hydrolase compare
AO353_04365 -1.0 -4.4 recombinase XerD compare
AO353_21830 -1.0 -7.9 chemotaxis protein CheY compare
AO353_17675 -1.0 -3.1 hypothetical protein compare
AO353_14775 -1.0 -4.7 hypothetical protein compare
AO353_19500 -1.0 -3.1 peptidase S8 and S53 subtilisin kexin sedolisin compare
AO353_20660 -1.0 -3.3 pseudouridine synthase compare
AO353_03775 -1.0 -4.9 pyruvate kinase compare
AO353_07315 -1.0 -1.9 rRNA methyltransferase compare
AO353_12080 -1.0 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO353_18285 -1.0 -3.2 3-phosphoglycerate kinase compare
AO353_26945 -1.0 -1.5 transcriptional regulator compare
AO353_01990 -1.0 -5.1 UDP-N-acetylglucosamine 2-epimerase compare
AO353_03605 -1.0 -1.3 FmdB family transcriptional regulator compare
AO353_00515 -1.0 -2.8 hypothetical protein compare
AO353_23350 -1.0 -2.2 hypothetical protein compare
AO353_13505 -1.0 -2.9 acetyltransferase compare
AO353_02720 -1.0 -4.3 cysteine synthase compare
AO353_19020 -1.0 -1.4 hypothetical protein compare
AO353_25640 -1.0 -2.3 AsnC family transcriptional regulator compare
AO353_15295 -1.0 -4.9 division/cell wall cluster transcriptional repressor MraZ compare
AO353_09785 -0.9 -2.6 hypothetical protein compare
AO353_04500 -0.9 -2.1 DNA repair protein RecO compare
AO353_00140 -0.9 -2.9 phage tail protein compare
AO353_07510 -0.9 -5.4 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_15725 -0.9 -3.1 hypothetical protein compare
AO353_12390 -0.9 -2.0 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_27650 -0.9 -3.5 cell division protein FtsK compare
AO353_08465 -0.9 -7.3 phosphoenolpyruvate-protein phosphotransferase compare
AO353_03630 -0.9 -6.3 porin compare
AO353_25585 -0.9 -2.1 argininosuccinate lyase compare
AO353_10435 -0.9 -5.3 chromosome partitioning protein compare
AO353_21665 -0.9 -2.8 magnesium chelatase compare
AO353_21410 -0.9 -1.8 hypothetical protein compare
AO353_08025 -0.9 -5.0 amino acid ABC transporter substrate-binding protein compare
AO353_13510 -0.9 -4.0 acetyltransferase compare
AO353_27500 -0.9 -1.5 hypothetical protein compare
AO353_09320 -0.9 -5.4 ATP-dependent DNA helicase RecG compare
AO353_09885 -0.9 -1.7 transcriptional regulator PhoU compare
AO353_02030 -0.9 -2.2 hypothetical protein compare
AO353_28555 -0.9 -1.6 LysR family transcriptional regulator compare
AO353_19090 -0.9 -1.7 MarR family transcriptional regulator compare
AO353_02640 -0.9 -1.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_23945 -0.8 -1.6 hypothetical protein compare
AO353_15185 -0.8 -3.2 ATPase compare
AO353_05550 -0.8 -3.4 pseudouridine synthase compare
AO353_00750 -0.8 -2.4 GntR family transcriptional regulator compare
AO353_11945 -0.8 -0.8 4-oxalocrotonate tautomerase compare
AO353_18780 -0.8 -4.0 cobyrinic acid a,c-diamide synthase compare
AO353_25330 -0.8 -2.7 biotin-independent malonate decarboxylase subunit beta compare
AO353_24255 -0.8 -2.8 hypothetical protein compare
AO353_11750 -0.8 -2.0 ATPase compare
AO353_12130 -0.8 -2.5 preprotein translocase subunit SecB compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Urea in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Urea across organisms