Experiment set5IT019 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with sodium carbonate monohydrate 0.0125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5006 -6.0 -5.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4584 -5.6 -3.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5068 -4.6 -13.4 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5069 -4.5 -6.5 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3941 -4.1 -2.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3658 -3.9 -6.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5430 -3.9 -9.7 Transglycosylase, Slt family compare
Pf6N2E2_3617 -3.9 -5.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3661 -3.7 -2.5 hypothetical protein compare
Pf6N2E2_5178 -3.5 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2753 -3.4 -2.3 HtrA protease/chaperone protein compare
Pf6N2E2_6140 -3.4 -1.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2219 -3.0 -2.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5671 -2.9 -4.4 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4369 -2.9 -2.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2825 -2.8 -4.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3659 -2.7 -5.9 Protein fixF compare
Pf6N2E2_3461 -2.7 -3.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2274 -2.6 -6.4 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_3663 -2.6 -8.5 Glycosyl transferase compare
Pf6N2E2_5150 -2.5 -6.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5242 -2.5 -2.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3301 -2.5 -13.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_4153 -2.5 -1.7 Sensory box histidine kinase compare
Pf6N2E2_5929 -2.4 -4.4 FIG00954461: hypothetical protein compare
Pf6N2E2_2318 -2.4 -8.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_144 -2.4 -15.2 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3303 -2.4 -4.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5339 -2.3 -7.3 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4204 -2.3 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4585 -2.2 -11.4 Cell division protein FtsX compare
Pf6N2E2_2574 -2.2 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_2320 -2.2 -2.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2189 -2.2 -4.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5544 -2.2 -6.3 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3656 -2.1 -5.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_3338 -2.1 -2.7 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_145 -2.0 -7.9 putative exported protein compare
Pf6N2E2_5523 -2.0 -3.5 Small-conductance mechanosensitive channel compare
Pf6N2E2_2278 -2.0 -13.2 Transcription-repair coupling factor compare
Pf6N2E2_5001 -2.0 -1.9 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_3607 -1.9 -7.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2506 -1.9 -11.1 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_3834 -1.9 -5.1 Lipoprotein NlpD compare
Pf6N2E2_1056 -1.8 -1.1 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5316 -1.8 -1.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5337 -1.8 -4.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3664 -1.8 -7.5 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_5705 -1.8 -2.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3665 -1.7 -1.2 serine/threonine protein kinase compare
Pf6N2E2_3611 -1.7 -1.6 HflC protein compare
Pf6N2E2_4372 -1.7 -5.1 FIG00460773: hypothetical protein compare
Pf6N2E2_4803 -1.7 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2508 -1.7 -3.9 hypothetical protein compare
Pf6N2E2_3074 -1.7 -2.4 FIG00960973: hypothetical protein compare
Pf6N2E2_5536 -1.6 -2.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5237 -1.6 -1.8 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_156 -1.6 -1.6 Carbon storage regulator compare
Pf6N2E2_2010 -1.6 -1.8 hypothetical protein compare
Pf6N2E2_2218 -1.6 -3.8 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3655 -1.6 -8.3 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3635 -1.6 -2.6 FIG00953138: hypothetical protein compare
Pf6N2E2_2126 -1.5 -5.4 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3641 -1.5 -2.9 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_2312 -1.5 -1.7 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2967 -1.5 -1.9 Cold shock protein CspA compare
Pf6N2E2_3460 -1.5 -1.4 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3285 -1.4 -3.7 Rod shape-determining protein MreD compare
Pf6N2E2_600 -1.4 -3.0 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3260 -1.4 -4.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2384 -1.4 -3.8 CmpX compare
Pf6N2E2_2507 -1.4 -5.0 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2313 -1.4 -3.4 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_1625 -1.4 -2.5 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2682 -1.4 -1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_855 -1.3 -3.5 Transcriptional regulator, IclR family compare
Pf6N2E2_3612 -1.3 -2.4 HflK protein compare
Pf6N2E2_5605 -1.3 -3.1 FxsA protein compare
Pf6N2E2_2510 -1.3 -3.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5727 -1.3 -4.7 FIG00955360: hypothetical protein compare
Pf6N2E2_2513 -1.3 -3.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5111 -1.3 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2340 -1.3 -3.3 Transcriptional regulator, GntR family compare
Pf6N2E2_2496 -1.2 -1.9 FIG00956575: hypothetical protein compare
Pf6N2E2_3171 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_1987 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_4763 -1.2 -6.8 Biotin synthesis protein BioC compare
Pf6N2E2_4710 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_5338 -1.2 -5.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_4352 -1.2 -2.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_546 -1.2 -2.1 FIG00966904: hypothetical protein compare
Pf6N2E2_1634 -1.2 -4.0 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_3786 -1.2 -2.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_2706 -1.2 -2.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4759 -1.2 -7.7 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_3792 -1.2 -4.4 Glucans biosynthesis protein G precursor compare
Pf6N2E2_6063 -1.2 -5.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3282 -1.2 -2.0 FIG005080: Possible exported protein compare
Pf6N2E2_2317 -1.2 -2.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5882 -1.2 -3.9 Putative membrane protein compare
Pf6N2E2_4889 -1.1 -4.4 Putative transport protein compare
Pf6N2E2_2201 -1.1 -2.4 Transmembrane regulator protein PrtR compare
Pf6N2E2_5956 -1.1 -4.1 FIG004453: protein YceG like compare
Pf6N2E2_2822 -1.1 -5.7 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_1635 -1.1 -4.2 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_5342 -1.1 -2.5 21 kDa hemolysin precursor compare
Pf6N2E2_1560 -1.1 -2.9 Glycine cleavage system transcriptional activator GcvA compare
Pf6N2E2_2708 -1.1 -3.8 Lactam utilization protein LamB compare
Pf6N2E2_4263 -1.1 -2.9 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_2473 -1.1 -1.3 Major outer membrane lipoprotein I compare
Pf6N2E2_2674 -1.1 -1.3 FIG00953856: hypothetical protein compare
Pf6N2E2_1147 -1.1 -1.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_2261 -1.1 -4.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_3783 -1.1 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_2264 -1.1 -2.6 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3521 -1.1 -5.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_40 -1.0 -3.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4159 -1.0 -2.4 Cytochrome c4 compare
Pf6N2E2_3770 -1.0 -2.0 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4764 -1.0 -3.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2707 -1.0 -3.0 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_953 -1.0 -1.3 FIG00958851: hypothetical protein compare
Pf6N2E2_3179 -1.0 -1.7 FIG021952: putative membrane protein compare
Pf6N2E2_5494 -1.0 -3.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2518 -1.0 -2.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_114 -1.0 -2.5 Polysaccharide biosynthesis protein compare
Pf6N2E2_5944 -1.0 -3.5 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_4761 -1.0 -5.8 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_1776 -1.0 -2.0 Chemotaxis protein CheD compare
Pf6N2E2_5128 -1.0 -2.2 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_5733 -1.0 -3.9 NLP/P60 family protein compare
Pf6N2E2_4188 -1.0 -2.6 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_3505 -1.0 -1.5 Translation initiation factor SUI1-related protein compare
Pf6N2E2_4276 -0.9 -3.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1632 -0.9 -3.2 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_3325 -0.9 -2.2 ABC transporter, ATP-binding protein compare
Pf6N2E2_2509 -0.9 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_451 -0.9 -2.3 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_37 -0.9 -2.4 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_238 -0.9 -1.8 hypothetical protein compare
Pf6N2E2_5669 -0.9 -3.6 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_339 -0.9 -1.7 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_5014 -0.9 -1.1 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_1215 -0.9 -2.0 probable membrane protein YPO2362 compare
Pf6N2E2_3258 -0.9 -2.6 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_6059 -0.9 -2.3 FIG008443: hypothetical protein compare
Pf6N2E2_5160 -0.9 -1.6 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_1032 -0.9 -1.1 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_2112 -0.9 -2.9 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) compare
Pf6N2E2_3666 -0.9 -2.0 InaA protein compare
Pf6N2E2_3009 -0.9 -2.3 Phage tail tube protein compare
Pf6N2E2_3004 -0.9 -1.8 Prophage baseplate assembly protein V compare
Pf6N2E2_1611 -0.9 -2.6 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_3842 -0.9 -2.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_2586 -0.9 -1.4 Hpt domain protein compare
Pf6N2E2_3833 -0.9 -3.7 hypothetical protein compare
Pf6N2E2_4541 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_5292 -0.9 -3.6 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_384 -0.9 -2.1 Glycine cleavage system transcriptional activator compare
Pf6N2E2_3328 -0.9 -1.6 transcriptional regulator compare
Pf6N2E2_1814 -0.9 -2.2 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf6N2E2_3081 -0.9 -2.9 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_1404 -0.9 -2.2 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_3839 -0.9 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_4071 -0.9 -3.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4638 -0.8 -2.0 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_6057 -0.8 -1.9 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3206 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_4579 -0.8 -1.3 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_5730 -0.8 -2.0 FIG00954480: hypothetical protein compare
Pf6N2E2_5245 -0.8 -3.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3096 -0.8 -1.2 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3791 -0.8 -4.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1652 -0.8 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_4631 -0.8 -4.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_3199 -0.8 -3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_2824 -0.8 -5.0 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_1633 -0.8 -2.5 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_5156 -0.8 -1.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5346 -0.8 -1.9 rRNA small subunit methyltransferase I compare
Pf6N2E2_6064 -0.8 -3.3 2-methylaconitate isomerase compare
Pf6N2E2_5520 -0.8 -3.1 Sensory box histidine kinase compare
Pf6N2E2_2127 -0.8 -2.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5406 -0.8 -1.6 FIG00958224: hypothetical protein compare
Pf6N2E2_4706 -0.8 -0.9 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3782 -0.8 -2.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4075 -0.8 -2.9 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4279 -0.8 -4.7 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_292 -0.8 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_445 -0.8 -3.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_5291 -0.8 -6.2 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2310 -0.8 -4.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3713 -0.8 -1.9 Acyl carrier protein compare
Pf6N2E2_81 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_2503 -0.8 -1.5 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_1636 -0.8 -4.0 Ferrichrome-iron receptor compare
Pf6N2E2_2536 -0.7 -1.0 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_3300 -0.7 -2.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_1340 -0.7 -1.7 major pilin protein fimA compare
Pf6N2E2_2919 -0.7 -1.6 FIG00955830: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress sodium carbonate monohydrate across organisms