Experiment set5IT013 for Agrobacterium fabrum C58

Compare to:

R2A with Nickel (II) chloride hexahydrate 0.05 mM

200 most important genes:

  gene name fitness t score description  
Atu1030 -2.8 -2.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0017 -2.6 -2.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0434 -2.6 -2.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0346 -2.4 -3.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1688 -2.3 -5.1 indole-3-glycerol-phosphate synthase compare
Atu2289 -2.3 -11.8 anthranilate synthase component I and II compare
Atu1687 -2.2 -7.4 anthranilate phosphoribosyltransferase compare
Atu0399 -2.1 -8.5 dihydroorotase compare
Atu1307 -2.0 -7.4 dihydroorotase compare
Atu0486 -1.9 -6.1 dihydroorotate dehydrogenase compare
Atu0184 -1.9 -3.9 glucokinase compare
Atu2684 -1.9 -1.1 hypothetical protein compare
Atu1354 -1.8 -2.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1308 -1.7 -5.7 aspartate carbamoyl transferase catalytic subunit compare
Atu0400 -1.7 -5.7 orotate phosphoribosyltransferase compare
Atu0103 -1.7 -10.1 penicillin-binding protein compare
Atu1891 -1.7 -5.0 cobalamin biosynthesis protein compare
Atu2728 -1.6 -4.8 beta (1-->2) glucan export ATP-binding protein compare
Atu4317 -1.5 -4.7 TetR family transcriptional regulator compare
Atu1140 -1.5 -5.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1446 -1.4 -2.3 two component response regulator compare
Atu1542 -1.3 -4.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2207 -1.3 -4.8 two component sensor kinase compare
Atu2796 -1.3 -5.5 precorrin-4 C11-methyltransferase compare
Atu1686 -1.2 -7.4 peptidyl-prolyl cis-trans isomerse D compare
Atu4217 -1.2 -1.4 TetR family transcriptional regulator compare
Atu1028 -1.2 -3.1 hypothetical protein compare
Atu2554 -1.2 -2.3 lysyl-tRNA synthetase compare
Atu0298 -1.2 -5.5 orotidine 5 compare
Atu2798 -1.1 -3.8 precorrin-6y methyltransferase compare
Atu2073 -1.1 -3.7 membrane protein compare
Atu3707 -1.1 -2.9 phosphoserine aminotransferase compare
Atu4773 -1.1 -1.9 two component response regulator compare
Atu3012 -1.1 -1.2 hypothetical protein compare
Atu2640 -1.1 -3.8 hypothetical protein compare
Atu3730 -1.1 -1.5 hypothetical protein compare
Atu2040 -1.1 -3.3 phosphoserine phosphatase compare
Atu5540 -1.0 -1.1 hypothetical protein compare
Atu1685 -1.0 -1.0 hypothetical protein compare
Atu3750 -1.0 -3.3 thiamine-phosphate pyrophosphorylase compare
Atu8138 -1.0 -1.2 hypothetical protein compare
Atu3754 -1.0 -6.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2802 -1.0 -5.7 precorrin-8X methylmutase compare
Atu2799 -1.0 -3.1 precorrin-6x reductase compare
Atu4187 -1.0 -1.6 tRNA-Met compare
Atu3121 -0.9 -1.6 cold shock protein compare
Atu1588 -0.9 -5.5 homoserine dehydrogenase compare
Atu2067 -0.9 -1.0 hypothetical protein compare
Atu0361 -0.9 -2.3 transcriptional regulator compare
Atu2113 -0.9 -2.5 N-acetylmuramoyl-L-alanine amidase compare
Atu0647 -0.9 -4.3 phosphoribosylamine--glycine ligase compare
Atu2804 -0.9 -5.7 cobaltochelatase subunit compare
Atu1844 -0.9 -2.1 Phosphoribosylformylglycinamidine synthetase compare
Atu3712 -0.9 -1.8 hypothetical protein compare
Atu3755 -0.9 -3.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3598 -0.9 -1.5 thiol:disulfide interchange protein compare
Atu2809 -0.9 -5.8 cobalamin biosynthesis protein compare
Atu4897 -0.9 -2.2 hypothetical protein compare
Atu2800 -0.9 -3.1 precorrin-3B C17-methyltransferase compare
Atu2793 -0.9 -4.0 cobyrinic acid a,c-diamide synthase compare
Atu0115 -0.8 -1.0 hypothetical protein compare
Atu0956 -0.8 -2.6 phage prohead protease compare
Atu1968 -0.8 -2.0 hypothetical protein compare
Atu1327 -0.8 -3.0 NADH-ubiquinone oxidoreductase compare
Atu3008 -0.8 -1.0 hypothetical protein compare
Atu2710 -0.8 -4.5 hypothetical protein compare
Atu0322 -0.8 -3.6 enoyl CoA hydratase compare
Atu0062 -0.8 -4.1 transcriptional regulator, ROK family compare
Atu4075 -0.8 -3.5 glycogen synthase compare
Atu8087 -0.8 -1.2 putative peptidoglycan binding protein compare
Atu0401 -0.8 -3.3 fructokinase compare
Atu3739 -0.8 -1.7 phosphoglycerate kinase compare
Atu3727 -0.8 -2.7 hypothetical protein compare
Atu2768 -0.7 -4.0 hypothetical protein compare
Atu1904 -0.7 -1.3 transcriptional regulator compare
Atu0029 -0.7 -2.8 S-adenosylhomocysteine hydrolase compare
Atu8025 -0.7 -1.4 hypothetical protein compare
Atu0640 -0.7 -2.7 hypothetical protein compare
Atu0039 -0.7 -1.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1075 -0.7 -3.2 amidophosphoribosyltransferase compare
Atu4896 -0.7 -2.1 acetyltransferase compare
Atu2808 -0.7 -2.8 cobyric acid synthase compare
Atu3706 -0.7 -3.9 D-3-phosphoglycerate dehydrogenase compare
Atu0236 -0.7 -1.8 hypothetical protein compare
Atu3006 -0.7 -2.9 hypothetical protein compare
Atu1536 -0.7 -1.9 cytochrome C oxidase, FixO chain compare
Atu0185 -0.7 -2.4 methylglyoxal synthase compare
Atu1739 -0.7 -3.1 permease compare
Atu4884 -0.7 -2.9 hypothetical protein compare
Atu0535 -0.7 -2.5 hypothetical protein compare
Atu2801 -0.7 -2.2 precorrin-2 C20 methyltransferase compare
Atu2057 -0.7 -1.0 DNA helicase II compare
Atu0036 -0.7 -2.2 hypothetical protein compare
Atu0723 -0.7 -1.3 FAD dependent oxidoreductase compare
Atu2807 -0.6 -3.1 cob(I)alamin adenosyltransferase compare
Atu2803 -0.6 -2.3 Cobalamin biosynthesis associated protein compare
Atu3016 -0.6 -3.9 phosphoglyceromutase compare
Atu2650 -0.6 -4.2 glycerol-3-phosphate dehydrogenase compare
Atu0726 -0.6 -4.2 ring hydroxylating dioxygenase, alpha-subunit compare
Atu1952 -0.6 -1.0 hypothetical protein compare
Atu4893 -0.6 -3.7 hypothetical protein compare
Atu3963 -0.6 -3.9 GntR family transcriptional regulator compare
Atu0938 -0.6 -1.6 transcriptional regulator, MerR family compare
Atu0038 -0.6 -3.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1141 -0.6 -3.1 Phosphoribosylglycinamide synthetase compare
Atu3017 -0.6 -1.0 phosphoglyceromutase compare
Atu3485 -0.6 -3.9 short chain dehydrogenase compare
Atu0972 -0.6 -2.6 lipA protein compare
Atu2805 -0.6 -3.1 cobalamin synthesis protein compare
Atu3593 -0.6 -3.1 hypothetical protein compare
Atu4873 -0.6 -3.5 TetR family transcriptional regulator compare
Atu0101 -0.6 -2.7 cytochrome c compare
Atu0598 -0.6 -3.5 phosphogluconate dehydratase compare
Atu2692 -0.6 -2.5 intracellular septation protein compare
Atu4894 -0.6 -3.4 transposase compare
Atu3482 -0.6 -2.8 pantoate--beta-alanine ligase compare
Atu4093 -0.6 -1.8 hypothetical protein compare
Atu4711 -0.6 -3.5 two component sensor kinase compare
Atu2794 -0.6 -1.9 uroporphyrin-III C-methyltransferase compare
Atu5057 -0.6 -1.5 hypothetical protein compare
Atu0727 -0.6 -3.7 ferredoxin I compare
Atu3481 -0.6 -3.3 enoyl-CoA hydratase compare
Atu1364 -0.6 -2.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2502 -0.6 -2.4 heme oxygenase compare
Atu0422 -0.6 -1.4 ABC transporter, membrane spanning protein compare
Atu3634 -0.6 -3.2 penicillin-binding protein dacf precursor compare
Atu1023 -0.6 -1.5 hypothetical protein compare
Atu2806 -0.6 -3.4 hypothetical protein compare
Atu0565 -0.6 -1.9 hypothetical protein compare
Atu1774 -0.6 -3.0 ABC transporter, substrate binding protein (peptide) compare
Atu8088 -0.6 -1.5 hypothetical protein compare
Atu0922 -0.5 -1.7 hypothetical protein compare
Atu1355 -0.5 -3.0 hypothetical protein compare
Atu1620 -0.5 -3.7 triosephosphate isomerase compare
Atu4108 -0.5 -3.4 ribonuclease D compare
Atu2239 -0.5 -1.8 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1845 -0.5 -1.7 phosphoribosylformylglycinamidine synthase I compare
Atu1850 -0.5 -2.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1634 -0.5 -0.5 hypothetical protein compare
Atu0357 -0.5 -2.7 phosphate starvation inducible protein compare
Atu1714 -0.5 -1.1 exonuclease III compare
Atu0031 -0.5 -1.0 PTS system, IIA component compare
Atu2766 -0.5 -4.4 NAD-glutamate dehydrogenase compare
Atu5160 -0.5 -1.6 transcriptional regulator protein compare
Atu8202 -0.5 -2.6 hypothetical protein compare
Atu0977 -0.5 -1.6 serine protease DO-like protease compare
Atu0193 -0.5 -2.1 glutamine synthetase compare
Atu3466 -0.5 -1.6 ArsR family transcriptional regulator compare
Atu3521 -0.5 -3.1 permease compare
Atu2795 -0.5 -2.6 cobalamin biosynthetic protein compare
Atu3032 -0.5 -2.4 hypothetical protein compare
Atu0689 -0.5 -3.9 ribosomal large subunit pseudouridine synthase B compare
Atu1734 -0.5 -1.4 hypothetical protein compare
Atu1468 -0.5 -2.5 hypothetical protein compare
Atu4643 -0.5 -1.1 hypothetical protein compare
Atu1464 -0.5 -2.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu1644 -0.5 -1.5 hypothetical protein compare
Atu1021 -0.5 -1.7 outer membrane protein compare
Atu8041 -0.5 -1.2 hypothetical protein compare
Atu8099 -0.5 -1.8 hypothetical protein compare
Atu1184 -0.5 -1.4 hypothetical protein compare
Atu5427 -0.5 -1.1 hypothetical protein compare
Atu5034 -0.5 -1.8 hypothetical protein compare
Atu2797 -0.5 -1.2 cobalamin biosynthesis protein compare
Atu4879 -0.5 -2.7 hypothetical protein compare
Atu1902 -0.5 -2.4 transketolase compare
Atu1645 -0.5 -3.1 ABC transporter, substrate binding protein compare
Atu1163 -0.5 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1851 -0.5 -1.5 BolA/YrbA family protein compare
Atu0501 -0.5 -3.5 acyl-CoA dehydrogenase compare
Atu0836 -0.5 -1.3 Glutathione-S-transferase compare
Atu0211 -0.5 -3.1 hypothetical protein compare
Atu3678 -0.5 -2.4 siderophore biosynthesis protein compare
Atu3912 -0.5 -2.9 hypothetical protein compare
Atu0025 -0.5 -1.1 hypothetical protein compare
Atu0135 -0.5 -0.8 uracil phosphoribosyltransferase compare
Atu2036 -0.5 -3.4 acetolactate synthase III, large subunit compare
Atu0463 -0.4 -1.9 hypothetical protein compare
Atu3144 -0.4 -1.8 GntR family transcriptional regulator compare
Atu3011 -0.4 -1.6 ArsR family transcriptional regulator compare
Atu0886 -0.4 -0.9 hypothetical protein compare
Atu2821 -0.4 -2.1 transcriptional regulator, GntR family compare
Atu2771 -0.4 -1.9 bacterioferritin compare
Atu4881 -0.4 -2.4 hypothetical protein compare
Atu0484 -0.4 -3.1 two component response regulator compare
Atu4869 -0.4 -1.6 hypothetical protein compare
Atu6181 -0.4 -2.2 virA/G regulated topoisomerase compare
Atu0823 -0.4 -3.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu4451 -0.4 -3.1 mannitol 2-dehydrogenase compare
Atu4685 -0.4 -2.7 LacI family transcriptional regulator compare
Atu4875 -0.4 -2.5 hypothetical protein compare
Atu4139 -0.4 -1.2 hypothetical protein compare
Atu1529 -0.4 -2.5 nitrogen fixation protein FixH compare
Atu3023 -0.4 -2.5 sugar ABC transporter permease compare
Atu0698 -0.4 -1.5 hypothetical protein compare
Atu4892 -0.4 -3.2 hypothetical protein compare
Atu0166 -0.4 -1.3 hypothetical protein compare
Atu1285 -0.4 -2.6 metal dependent hydrolase compare
Atu4171 -0.4 -2.3 cold-shock dead-box protein A compare
Atu3075 -0.4 -3.1 TetR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms