Experiment set5IT005 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Adenine hydrochloride hydrate nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Pf1N1B4_4897 +2.1 2.7 Transcriptional regulator, LysR family compare
Pf1N1B4_1294 +2.0 2.1 VgrG protein compare
Pf1N1B4_3547 +2.0 2.2 DNA-binding response regulator compare
Pf1N1B4_5720 +1.9 2.1 hypothetical protein compare
Pf1N1B4_2823 +1.8 2.8 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_5383 +1.7 10.0 hypothetical protein compare
Pf1N1B4_4145 +1.7 2.5 hypothetical protein compare
Pf1N1B4_479 +1.6 2.5 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_4554 +1.6 2.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf1N1B4_1328 +1.6 2.4 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_5381 +1.6 7.2 hypothetical protein compare
Pf1N1B4_78 +1.5 3.1 FIG00956937: hypothetical protein compare
Pf1N1B4_5833 +1.5 2.1 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) compare
Pf1N1B4_2177 +1.5 1.7 FIG00953342: hypothetical protein compare
Pf1N1B4_373 +1.5 1.6 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_4212 +1.5 1.9 Gfa-like protein compare
Pf1N1B4_3396 +1.4 2.1 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_4539 +1.4 1.9 Uncharacterized protein homologous to Paeru. PA2364 compare
Pf1N1B4_4729 +1.4 1.7 Hemolysin-type calcium-binding region compare
Pf1N1B4_4765 +1.3 1.9 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf1N1B4_4867 +1.3 2.0 FIG00464907: hypothetical protein compare
Pf1N1B4_2249 +1.3 2.4 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf1N1B4_507 +1.3 1.6 FIG00956448: hypothetical protein compare
Pf1N1B4_4458 +1.3 2.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_74 +1.2 1.6 hypothetical protein compare
Pf1N1B4_5508 +1.2 1.6 hypothetical protein compare
Pf1N1B4_1482 +1.2 2.2 hypothetical protein compare
Pf1N1B4_5382 +1.2 2.4 hypothetical protein compare
Pf1N1B4_88 +1.2 2.1 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf1N1B4_866 +1.2 1.3 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_5278 +1.2 1.5 hypothetical protein compare
Pf1N1B4_740 +1.2 1.6 Leucyl-tRNA synthetase compare
Pf1N1B4_4168 +1.2 1.4 putative membrane protein compare
Pf1N1B4_237 +1.2 2.1 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_3620 +1.2 1.7 Flagellar biosynthesis protein FliR compare
Pf1N1B4_5331 +1.1 1.9 hypothetical protein compare
Pf1N1B4_4140 +1.1 1.7 hypothetical protein compare
Pf1N1B4_5555 +1.1 2.7 hypothetical protein compare
Pf1N1B4_617 +1.1 1.4 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3296 +1.1 2.0 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_3373 +1.1 2.2 FIG00954689: hypothetical protein compare
Pf1N1B4_5353 +1.1 2.6 hypothetical protein compare
Pf1N1B4_5275 +1.1 1.4 hypothetical protein compare
Pf1N1B4_483 +1.1 1.6 Metal-dependent hydrolase related to alanyl-tRNA synthetase compare
Pf1N1B4_4895 +1.1 2.1 Putrescine ABC transporter, periplasmic putrescine-binding protein compare
Pf1N1B4_4177 +1.1 1.4 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_4913 +1.1 2.2 hypothetical protein compare
Pf1N1B4_3836 +1.1 1.6 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_2958 +1.1 1.7 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_5967 +1.1 2.1 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare
Pf1N1B4_1792 +1.1 2.2 Taurine transport ATP-binding protein TauB compare
Pf1N1B4_4317 +1.1 1.1 DNA/RNA non-specific endonuclease compare
Pf1N1B4_2075 +1.1 2.4 ABC-type antimicrobial peptide transport system, permease component compare
Pf1N1B4_981 +1.0 2.2 UPF0246 protein YaaA compare
Pf1N1B4_3546 +1.0 1.4 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_4751 +1.0 1.7 Ku domain protein compare
Pf1N1B4_1458 +1.0 5.4 Probable transcription regulator Mig-14 compare
Pf1N1B4_4516 +1.0 1.5 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_403 +1.0 1.4 FIG00965925: hypothetical protein compare
Pf1N1B4_68 +1.0 1.9 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_3305 +1.0 1.7 Urea carboxylase-related ABC transporter, permease protein compare
Pf1N1B4_4721 +1.0 2.1 Nuclease inhibitor compare
Pf1N1B4_619 +1.0 1.5 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf1N1B4_749 +1.0 1.3 hypothetical protein compare
Pf1N1B4_4438 +1.0 1.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_4951 +1.0 1.8 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2314 +1.0 1.4 FIG028932: hypothetical protein compare
Pf1N1B4_5554 +1.0 1.6 hypothetical protein compare
Pf1N1B4_5722 +1.0 1.2 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_5753 +1.0 1.3 putative membrane protein compare
Pf1N1B4_4166 +1.0 1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_574 +1.0 2.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_5433 +1.0 2.1 hypothetical protein compare
Pf1N1B4_5480 +1.0 2.5 hypothetical protein compare
Pf1N1B4_3866 +1.0 1.4 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_102 +0.9 1.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_2427 +0.9 1.7 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare
Pf1N1B4_3985 +0.9 1.2 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_128 +0.9 1.5 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_198 +0.9 1.3 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf1N1B4_5618 +0.9 1.4 Excinuclease ABC subunit C compare
Pf1N1B4_4764 +0.9 1.9 2-ketogluconate transporter compare
Pf1N1B4_5279 +0.9 1.6 hypothetical protein compare
Pf1N1B4_4523 +0.9 1.2 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_4455 +0.9 1.3 FIG00953528: hypothetical protein compare
Pf1N1B4_3463 +0.9 3.1 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_1750 +0.9 1.7 Death on curing protein, Doc toxin compare
Pf1N1B4_4920 +0.9 2.3 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_2871 +0.9 2.3 FIG00954216: hypothetical protein compare
Pf1N1B4_883 +0.9 1.1 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_4172 +0.9 1.2 hypothetical protein compare
Pf1N1B4_5870 +0.9 1.3 VgrG protein compare
Pf1N1B4_3056 +0.9 2.0 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_1511 +0.9 1.1 FIG027190: Putative transmembrane protein compare
Pf1N1B4_5443 +0.8 2.5 hypothetical protein compare
Pf1N1B4_5411 +0.8 2.1 hypothetical protein compare
Pf1N1B4_3572 +0.8 2.2 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf1N1B4_4725 +0.8 1.7 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) compare
Pf1N1B4_3467 +0.8 0.9 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_92 +0.8 1.7 Porphobilinogen synthase (EC 4.2.1.24) compare
Pf1N1B4_4429 +0.8 1.2 No significant database matches compare
Pf1N1B4_4009 +0.8 2.0 Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3) compare
Pf1N1B4_4671 +0.8 1.3 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_2713 +0.8 1.7 FIG00955339: hypothetical protein compare
Pf1N1B4_4264 +0.8 1.7 Aminobutyraldehyde dehydrogenase (EC 1.2.1.19) compare
Pf1N1B4_3581 +0.8 1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_3638 +0.8 1.8 FIG00955434: hypothetical protein compare
Pf1N1B4_251 +0.8 2.1 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2173 +0.8 1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf1N1B4_3211 +0.8 1.9 Putative signal peptide protein compare
Pf1N1B4_4972 +0.8 1.0 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_5476 +0.8 1.2 hypothetical protein compare
Pf1N1B4_506 +0.8 2.9 Transcriptional regulator, AraC family compare
Pf1N1B4_1039 +0.8 1.8 putative membrane protein compare
Pf1N1B4_1472 +0.8 1.2 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_3549 +0.8 1.4 YciL protein compare
Pf1N1B4_5715 +0.8 2.3 RND efflux membrane fusion protein compare
Pf1N1B4_4879 +0.8 1.7 Chromosome segregation ATPases compare
Pf1N1B4_4027 +0.8 1.0 hypothetical protein compare
Pf1N1B4_9 +0.8 2.1 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf1N1B4_4241 +0.8 2.4 Dienelactone hydrolase family compare
Pf1N1B4_2150 +0.8 1.5 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_3286 +0.8 2.3 hypothetical protein compare
Pf1N1B4_4004 +0.8 1.0 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_4874 +0.8 1.3 hypothetical protein compare
Pf1N1B4_3134 +0.8 1.3 probable tail fiber assembly-like protein compare
Pf1N1B4_3378 +0.8 2.1 Tricarboxylate transport protein TctB compare
Pf1N1B4_5814 +0.8 1.3 putative membrane protein compare
Pf1N1B4_405 +0.8 2.2 Carbohydrate kinase, PfkB family compare
Pf1N1B4_2506 +0.8 2.0 Transcriptional regulator, AsnC family compare
Pf1N1B4_5881 +0.8 2.1 AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system compare
Pf1N1B4_5589 +0.8 1.7 3-ketoacyl-CoA thiolase (EC 2.3.1.16) compare
Pf1N1B4_2359 +0.8 1.3 Chemotaxis signal transduction protein compare
Pf1N1B4_2734 +0.8 0.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf1N1B4_4594 +0.8 1.0 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_4208 +0.8 0.9 organophosphate pesticide hydrolase compare
Pf1N1B4_44 +0.8 4.2 Multicopper oxidase compare
Pf1N1B4_1105 +0.8 1.1 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf1N1B4_230 +0.8 1.2 FIG00953472: hypothetical protein compare
Pf1N1B4_4042 +0.7 2.1 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Pf1N1B4_5797 +0.7 1.1 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) compare
Pf1N1B4_5799 +0.7 1.5 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf1N1B4_5759 +0.7 1.3 Nitric-oxide reductase subunit B (EC 1.7.99.7) compare
Pf1N1B4_94 +0.7 1.8 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_3435 +0.7 1.4 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_5329 +0.7 1.4 hypothetical protein compare
Pf1N1B4_2757 +0.7 1.7 DJ-1/YajL/PfpI superfamily, includes chaperone protein YajL (former ThiJ), parkinsonism-associated protein DJ-1, peptidases PfpI, Hsp31 compare
Pf1N1B4_4017 +0.7 1.2 DNA-binding heavy metal response regulator compare
Pf1N1B4_3670 +0.7 1.5 probable glucosyl transferase compare
Pf1N1B4_34 +0.7 1.0 Xanthine permease compare
Pf1N1B4_3656 +0.7 1.0 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_4487 +0.7 1.1 FIG00955631: hypothetical protein compare
Pf1N1B4_5014 +0.7 0.9 Glutathione reductase (EC 1.8.1.7) compare
Pf1N1B4_3865 +0.7 1.5 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_4281 +0.7 2.1 Glyceraldehyde-3-phosphate ketol-isomerase (EC 5.3.1.1) compare
Pf1N1B4_4271 +0.7 1.6 Hydrogen cyanide synthase HcnC / Opine oxidase subunit B compare
Pf1N1B4_343 +0.7 1.7 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Pf1N1B4_4119 +0.7 1.2 dioxygenase compare
Pf1N1B4_5239 +0.7 1.3 hypothetical protein compare
Pf1N1B4_5380 +0.7 2.2 hypothetical protein compare
Pf1N1B4_4613 +0.7 1.5 FIG00953934: hypothetical protein compare
Pf1N1B4_4889 +0.7 2.8 Cystathionine beta-synthase (EC 4.2.1.22) compare
Pf1N1B4_616 +0.7 1.2 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4412 +0.7 1.3 Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83) compare
Pf1N1B4_4702 +0.7 2.6 Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching compare
Pf1N1B4_4717 +0.7 1.0 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_4982 +0.7 1.0 Transcriptional regulator, AraC family compare
Pf1N1B4_130 +0.7 2.0 DNA-binding response regulator, LuxR family compare
Pf1N1B4_4247 +0.7 1.3 D-aminopeptidase (EC 3.4.11.19) compare
Pf1N1B4_4711 +0.7 1.8 hypothetical protein compare
Pf1N1B4_4950 +0.7 1.6 formate dehydrogenase formation protein FdhE compare
Pf1N1B4_2072 +0.7 1.8 Phosphoprotein phosphatase PppA compare
Pf1N1B4_5718 +0.7 1.2 Transcriptional regulator, Cro/CI family compare
Pf1N1B4_5851 +0.7 1.3 Transcriptional regulator, RpiR family compare
Pf1N1B4_188 +0.7 0.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4772 +0.7 2.0 RND efflux system, inner membrane transporter CmeB compare
Pf1N1B4_5479 +0.7 2.3 hypothetical protein compare
Pf1N1B4_4217 +0.7 1.8 MISCELLANEOUS; Hypothetical/Global homology compare
Pf1N1B4_1513 +0.7 3.2 FIG064705: cation/hydrogen antiporter compare
Pf1N1B4_769 +0.7 3.0 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_1722 +0.7 2.4 transcriptional regulator, Crp/Fnr family compare
Pf1N1B4_5425 +0.7 1.0 DNA-binding protein HU-beta compare
Pf1N1B4_5089 +0.7 1.3 Exopolysaccharide production protein ExoQ compare
Pf1N1B4_4396 +0.7 1.3 Arginine/ornithine ABC transporter, ATP-binding protein AotP compare
Pf1N1B4_3909 +0.7 1.1 Cell division inhibitor-related protein compare
Pf1N1B4_4459 +0.7 1.1 Thermostable hemolysin delta-VPH compare
Pf1N1B4_2102 +0.7 1.1 hypothetical protein compare
Pf1N1B4_512 +0.7 1.9 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_5243 +0.7 1.5 hypothetical protein compare
Pf1N1B4_1465 +0.7 5.2 Carbamoyltransferase in large core OS assembly cluster compare
Pf1N1B4_4110 +0.7 1.5 hypothetical protein compare
Pf1N1B4_4842 +0.7 1.7 VgrG protein compare
Pf1N1B4_3165 +0.7 2.4 DNA polymerase IV (EC 2.7.7.7) compare
Pf1N1B4_1018 +0.7 2.1 Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) compare
Pf1N1B4_1504 +0.7 1.0 Acyl carrier protein compare
Pf1N1B4_29 +0.6 1.0 FIG00967200: hypothetical protein compare
Pf1N1B4_175 +0.6 0.8 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1194 +0.6 0.9 hypothetical protein compare
Pf1N1B4_5701 +0.6 1.4 FIG00955602: hypothetical protein compare
Pf1N1B4_3135 +0.6 1.8 Prophage tail fiber protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source Adenine hydrochloride hydrate in Pseudomonas fluorescens FW300-N1B4

For nitrogen source Adenine hydrochloride hydrate across organisms