Experiment set55S343 for Pseudomonas putida KT2440

Compare to:

TNT nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PP_1186 +2.8 2.4 two component system DNA-binding transcriptional dual regulator compare
PP_t29 +1.3 1.3 tRNA-Ala compare
PP_1164 +1.3 3.1 Transcriptional regulator, LysR family compare
PP_0547 +1.2 3.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2152 +1.2 2.4 glycerophosphoryl diester phosphodiesterase compare
PP_3052 +1.2 1.6 conserved protein of unknown function compare
PP_0643 +1.1 1.9 protein of unknown function compare
PP_0888 +1.1 1.5 Photosynthetic apparatus regulatory protein RegA compare
PP_5090 +1.1 1.7 putative cell division protein compare
PP_0553 +1.1 2.9 Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system compare
PP_3000 +1.0 2.4 MaoC domain protein compare
PP_5338 +1.0 1.8 aspartate ammonia-lyase compare
PP_4519 +1.0 7.2 Agglutination protein compare
PP_2196 +1.0 2.4 agmatinase compare
PP_3971 +0.9 1.5 conserved protein of unknown function compare
PP_1020 +0.9 2.0 putative glucose-6-phosphate 1-epimerase compare
PP_t13 +0.9 2.2 tRNA-Lys compare
PP_0165 +0.9 7.3 GGDEF domain protein compare
PP_4373 +0.9 6.1 Transcriptional regulator FleQ compare
PP_5022 +0.9 1.6 Glutamine transport ATP-binding protein GlnQ compare
PP_0065 +0.9 1.3 NAD-binding component of TrK potassium transporter compare
PP_3197 +0.9 2.1 Glyoxalase family protein compare
PP_5667 +0.9 3.0 putative microcin B17-like-processing protein, McbC family compare
PP_5337 +0.9 3.2 LysR family transcriptional regulator compare
PP_3190 +0.9 2.4 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_0168 +0.8 7.6 putative surface adhesion protein compare
PP_2313 +0.8 2.3 conserved membrane protein of unknown function compare
PP_0166 +0.8 6.7 HlyD family secretion protein compare
PP_1326 +0.8 1.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_3365 +0.8 1.0 Acetolactate synthase compare
PP_5248 +0.8 1.1 putative hydrolase compare
PP_0167 +0.8 6.8 Toxin secretion ATP-binding protein compare
PP_1045 +0.8 1.1 Type II secretion pathway protein XcpP compare
PP_4738 +0.8 1.9 conserved exported protein of unknown function compare
PP_5505 +0.8 1.8 conserved transmembrane protein of unknown function compare
PP_0512 +0.8 2.0 hypothetical protein compare
PP_3888 +0.8 2.8 conserved protein of unknown function compare
PP_0989 +0.8 2.7 glycine cleavage system H protein 1 compare
PP_3415 +0.8 4.2 Transcriptional regulator, LacI family compare
PP_0846 +0.8 0.8 DnaK-like molecular chaperone specific for IscU compare
PP_3938 +0.8 1.5 conserved protein of unknown function compare
PP_3519 +0.7 0.6 putative Lipoprotein compare
PP_3903 +0.7 1.1 conserved protein of unknown function compare
PP_2031 +0.7 1.2 conserved protein of unknown function compare
PP_2044 +0.7 1.5 conserved inner membrane protein of unknown function compare
PP_5489 +0.7 1.8 conserved protein of unknown function compare
PP_0630 +0.7 0.8 DNA gyrase inhibitor YacG compare
PP_3307 +0.7 1.6 conserved protein of unknown function compare
PP_5453 +0.7 0.8 conserved protein of unknown function compare
PP_1445 +0.7 3.7 carbohydrate-selective porin compare
PP_2046 +0.7 2.2 Transcriptional regulator, LysR family compare
PP_1609 +0.7 0.8 conserved protein of unknown function compare
PP_0848 +0.7 1.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4419 +0.7 1.9 transposase compare
PP_2580 +0.7 1.1 conserved protein of unknown function compare
PP_2695 +0.7 1.9 Transcriptional regulator, LysR family compare
PP_2087 +0.7 1.4 CmpX protein compare
PP_3002 +0.7 1.6 shikimate dehydrogenase-related enzyme compare
PP_2595 +0.7 2.0 putative ABC transporter, permease/ATP-binding protein compare
PP_1512 +0.7 1.8 conserved protein of unknown function compare
PP_3864 +0.6 2.2 putative Phage FluMu DNA circulation protein compare
PP_1468 +0.6 0.8 Tyrosine recombinase XerD compare
PP_5247 +0.6 2.9 conserved protein of unknown function compare
PP_3121 +0.6 1.6 transcriptional regulator, LysR family compare
PP_5571 +0.6 1.0 conserved protein of unknown function compare
PP_3245 +0.6 1.4 conserved protein of unknown function compare
PP_2406 +0.6 2.0 putative quinate/shikimate dehydrogenase compare
PP_5145 +0.6 5.7 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3614 +0.6 1.1 conserved membrane protein of unknown function compare
PP_2646 +0.6 2.0 conserved protein of unknown function compare
PP_3866 +0.6 1.7 conserved protein of unknown function compare
PP_0508 +0.6 1.4 conserved exported protein of unknown function compare
PP_5569 +0.6 1.7 protein of unknown function of phage origin compare
PP_2025 +0.6 1.6 Exonuclease SbcD compare
PP_0827 +0.6 2.0 putative phosphonate transport system permease protein PtxC compare
PP_0352 +0.6 1.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_1478 +0.6 3.6 putative Xenobiotic reductase compare
PP_1867 +0.6 2.4 conserved protein of unknown function compare
PP_2497 +0.6 1.0 conserved protein of unknown function compare
PP_2880 +0.6 1.0 Transcriptional regulator, TetR family compare
PP_0250 +0.6 1.5 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1122 +0.6 1.4 OmpA family protein compare
PP_1235 +0.6 2.8 AhpC/TSA family protein compare
PP_3916 +0.6 1.3 conserved protein of unknown function compare
PP_3516 +0.6 2.0 Transcriptional regulator, AraC family compare
PP_0305 +0.6 1.4 HTH-type transcriptional regulator CdhR compare
PP_4902 +0.6 0.8 Oligoribonuclease compare
PP_3814 +0.6 2.2 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_0945 +0.6 1.8 conserved protein of unknown function compare
PP_0246 +0.6 0.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_1938 +0.6 1.5 conserved protein of unknown function compare
PP_2256 +0.6 1.3 Transcriptional regulator, Cro/CI family compare
PP_1381 +0.6 1.0 4-carboxymuconolactone decarboxylase compare
PP_3480 +0.6 1.4 conserved protein of unknown function compare
PP_4479 +0.6 2.6 arginine N-succinyltransferase, subunit beta compare
PP_0355 +0.6 2.8 Response regulator compare
PP_5582 +0.6 1.2 conserved protein of unknown function compare
PP_3089 +0.5 1.6 conserved protein of unknown function compare
PP_2142 +0.5 1.2 Cell division inhibitor SulA compare
PP_1690 +0.5 1.6 conserved protein of unknown function compare
PP_2898 +0.5 1.2 conserved exported protein of unknown function compare
PP_4828 +0.5 0.9 Precorrin-8X methylmutase compare
PP_2090 +0.5 1.2 Uroporphyrinogen-III C-methyltransferase compare
PP_2883 +0.5 1.0 conserved protein of unknown function compare
PP_5204 +0.5 1.6 conserved protein of unknown function compare
PP_0152 +0.5 2.0 conserved exported protein of unknown function compare
PP_2417 +0.5 1.6 putative Iron ABC transporter, permease protein compare
PP_1906 +0.5 1.5 ribosomal large subunit pseudouridine synthase C compare
PP_2247 +0.5 1.8 putative Endoribonuclease compare
PP_1758 +0.5 2.4 putative sulfurtransferase containing rhodanese-like domain compare
PP_2050 +0.5 2.2 conserved protein of unknown function compare
PP_3222 +0.5 3.2 ABC transporter, permease protein compare
PP_0306 +0.5 2.0 conserved protein of unknown function compare
PP_4036 +0.5 2.9 D-hydantoinase/dihydropyrimidinase compare
PP_1834 +0.5 1.0 conserved protein of unknown function compare
PP_2906 +0.5 2.7 Sensor histidine kinase compare
PP_1439 +0.5 0.8 conserved exported protein of unknown function compare
PP_5272 +0.5 2.2 conserved protein of unknown function compare
PP_0354 +0.5 3.7 CBS domain protein compare
PP_2028 +0.5 1.1 conserved protein of unknown function containing tetratricopeptide (TPR) domain repeat compare
PP_2931 +0.5 1.5 conserved protein of unknown function compare
PP_4223 +0.5 0.6 diaminobutyrate-2-oxoglutarate transaminase compare
PP_5176 +0.5 1.4 conserved protein of unknown function compare
PP_3476 +0.5 2.0 Type II secretion system protein G compare
PP_3730 +0.5 0.5 Transcriptional regulatory protein AruR compare
PP_4171 +0.5 4.4 conserved exported protein of unknown function compare
PP_3902 +0.5 1.1 conserved protein of unknown function compare
PP_3226 +0.5 2.3 Acyl-CoA dehydrogenase-related protein compare
PP_4913 +0.5 1.9 conserved protein of unknown function compare
PP_3018 +0.5 2.5 conserved protein of unknown function compare
PP_4015 +0.5 2.4 HflD-like high frequency lysogenization protein compare
PP_5441 +0.5 1.1 protein of unknown function compare
PP_1113 +0.5 2.7 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2601 +0.5 2.7 Transcriptional regulator, IclR family compare
PP_3014 +0.5 0.9 conserved exported protein of unknown function compare
PP_2668 +0.5 0.8 ABC efflux transporter, ATP-binding protein compare
PP_4561 +0.5 0.6 stress response protein compare
PP_1217 +0.5 1.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2927 +0.5 2.0 conserved protein of unknown function compare
PP_4541 +0.5 1.1 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_2972 +0.5 1.8 conserved protein of unknown function compare
PP_3371 +0.5 2.3 Sensor histidine kinase compare
PP_3123 +0.5 3.2 acetoacetyl CoA-transferase (subunit B) compare
PP_1605 +0.5 1.2 Ribonuclease HII compare
PP_4230 +0.5 2.7 conserved exported protein of unknown function compare
PP_5586 +0.5 2.1 exported protein of unknown function compare
PP_2160 +0.5 1.2 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2603 +0.5 1.7 conserved protein of unknown function compare
PP_0191 +0.5 1.8 Transcriptional regulatory protein AlgQ compare
PP_2581 +0.5 0.8 conserved protein of unknown function compare
PP_1457 +0.5 2.9 Phosphoribosylglycinamide formyltransferase 2 compare
PP_0109 +0.5 2.4 conserved membrane protein of unknown function compare
PP_3471 +0.5 1.1 conserved protein of unknown function compare
PP_4916 +0.5 1.9 putative esterase compare
PP_4483 +0.5 2.7 histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit compare
PP_2199 +0.5 2.3 conserved protein of unknown function compare
PP_4340 +0.5 1.8 response regulator for chemotactic signal transduction compare
PP_4500 +0.5 1.5 TrpH family protein compare
PP_3013 +0.5 1.8 conserved protein of unknown function compare
PP_5085 +0.5 2.3 malic enzyme B compare
PP_4094 +0.5 0.9 conserved protein of unknown function compare
PP_4626 +0.5 1.7 holin regulator of murein hydrolases compare
PP_3434 +0.5 0.8 conserved protein of unknown function compare
PP_4356 +0.5 1.6 Flagellar protein FliO compare
PP_1153 +0.5 0.9 putative lipoprotein compare
PP_2074 +0.5 1.8 Transcriptional regulator, LysR family compare
PP_1048 +0.5 0.6 putative protein secretion protein for export compare
PP_5324 +0.4 1.0 Response regulator compare
PP_t64 +0.4 1.5 tRNA-Gly compare
PP_2430 +0.4 1.9 Transcriptional regulator, AraC family compare
PP_5714 +0.4 1.2 conserved protein of unknown function compare
PP_1935 +0.4 1.1 Transcriptional regulator, Cro/CI family compare
PP_1713 +0.4 1.0 Transcriptional regulator PcaQ compare
PP_0760 +0.4 1.8 conserved membrane protein of unknown function compare
PP_3637 +0.4 0.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4164 +0.4 2.4 Alpha/beta hydrolase compare
PP_2347 +0.4 1.4 DNA-binding response regulator compare
PP_1004 +0.4 1.2 conserved protein of unknown function compare
PP_0805 +0.4 2.9 Outer membrane efflux protein compare
PP_2854 +0.4 1.4 conserved exported protein of unknown function compare
PP_4569 +0.4 1.1 conserved protein of unknown function compare
PP_0488 +0.4 2.6 putative NADP-dependent dehydrogenase HI_1430 compare
PP_4989 +0.4 1.2 Protein PilJ compare
PP_4258 +0.4 1.1 cytochrome c oxidase subunit, cbb3-type compare
PP_2349 +0.4 1.9 nitrite transporter, HPP family (from data) compare
PP_2027 +0.4 1.7 conserved exported protein of unknown function compare
PP_5504 +0.4 2.6 conserved protein of unknown function compare
PP_5430 +0.4 1.6 protein of unknown function compare
PP_2970 +0.4 1.6 conserved exported protein of unknown function compare
PP_4143 +0.4 1.2 conserved protein of unknown function compare
PP_0948 +0.4 1.3 Phosphocarrier protein HPr compare
PP_0593 +0.4 0.3 putative ribosome-binding factor compare
PP_4338 +0.4 2.1 Chemotaxis histidine kinase CheA compare
PP_5169 +0.4 2.3 sulfate ABC transporter, inner membrane subunit CysW compare
PP_3254 +0.4 1.8 putative Nucleosidase compare
PP_4316 +0.4 2.3 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_4808 +0.4 0.8 23S rRNA m3psi1915 methyltransferase compare
PP_0114 +0.4 1.9 methionine ABC transporter ATP-binding protein compare
PP_2172 +0.4 1.9 conserved exported protein of unknown function compare
PP_5670 +0.4 1.6 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source Trinitrotoluene across organisms