| | gene | name | fitness | t score | description | |
|---|
| b3236 | mdh | +1.8 | 15.0 | malate dehydrogenase (NCBI) | compare |
| b2217 | rcsB | +1.6 | 12.8 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b4154 | frdA | +1.5 | 13.8 | fumarate reductase (NCBI) | compare |
| b4152 | frdC | +1.5 | 8.4 | fumarate reductase subunit C (NCBI) | compare |
| b2741 | rpoS | +1.5 | 12.1 | RNA polymerase sigma factor (NCBI) | compare |
| b4151 | frdD | +1.5 | 6.6 | fumarate reductase subunit D (NCBI) | compare |
| b4153 | frdB | +1.5 | 11.1 | fumarate reductase (anaerobic), Fe-S subunit (NCBI) | compare |
| b1594 | dgsA | +1.3 | 6.6 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2528 | iscA | +1.3 | 3.2 | iron-sulfur cluster assembly protein (NCBI) | compare |
| b2168 | fruK | +1.0 | 1.1 | 1-phosphofructokinase (NCBI) | compare |
| b3261 | fis | +1.0 | 3.0 | DNA-binding protein Fis (NCBI) | compare |
| b3181 | greA | +1.0 | 6.8 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1492 | gadC | +1.0 | 8.3 | predicted glutamate:gamma-aminobutyric acid antiporter (NCBI) | compare |
| b3438 | gntR | +1.0 | 6.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b1823 | cspC | +1.0 | 3.0 | stress protein, member of the CspA-family (NCBI) | compare |
| b4122 | fumB | +0.8 | 7.1 | anaerobic class I fumarate hydratase (fumarase B) (NCBI) | compare |
| b2279 | nuoK | +0.8 | 2.1 | NADH dehydrogenase subunit K (NCBI) | compare |
| b0955 | ycbZ | +0.8 | 6.9 | predicted peptidase (NCBI) | compare |
| b2934 | cmtB | +0.8 | 1.1 | predicted mannitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1954 | dsrA | +0.8 | 3.5 | regulatory antisense RNA (NCBI) | compare |
| b1187 | fadR | +0.8 | 4.6 | fatty acid metabolism regulator (NCBI) | compare |
| b1480 | sra | +0.8 | 2.4 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b3512 | GadE | +0.8 | 4.0 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b1658 | purR | +0.7 | 4.2 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b1628 | rsxB | +0.7 | 2.3 | electron transport complex protein RnfB (NCBI) | compare |
| b4124 | dcuR | +0.7 | 6.4 | DNA-binding response regulator in two-component regulatory system with DcuS (NCBI) | compare |
| b4133 | cadC | +0.7 | 6.5 | DNA-binding transcriptional activator (NCBI) | compare |
| b1160 | elbA | +0.7 | 1.2 | hypothetical protein (NCBI) | compare |
| b1936 | intG | +0.7 | 1.0 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b2286 | nuoC | +0.7 | 4.0 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b2814 | metZ | +0.7 | 1.8 | tRNA-Met (NCBI) | compare |
| b4125 | dcuS | +0.6 | 5.5 | sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration (NCBI) | compare |
| b4222 | ytfP | +0.6 | 3.1 | hypothetical protein (NCBI) | compare |
| b1949 | fliQ | +0.6 | 3.1 | flagellar biosynthesis protein Q (NCBI) | compare |
| b1536 | ydeI | +0.6 | 1.1 | hypothetical protein (NCBI) | compare |
| b1824 | yobF | +0.6 | 2.4 | hypothetical protein (NCBI) | compare |
| b4595 | yciY | +0.6 | 1.7 | hypothetical protein (RefSeq) | compare |
| b1007 | b1007 | +0.6 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2642 | yfjW | +0.6 | 1.0 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b0661 | miaB | +0.6 | 4.8 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b2502 | ppx | +0.5 | 4.4 | exopolyphosphatase (NCBI) | compare |
| b1627 | rsxA | +0.5 | 3.1 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b2343 | b2343 | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3934 | cytR | +0.5 | 4.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1848 | yebG | +0.5 | 1.5 | conserved protein regulated by LexA (NCBI) | compare |
| b3194 | yrbE | +0.5 | 4.1 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1582 | ynfA | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b1992 | cobS | +0.5 | 2.4 | cobalamin synthase (NCBI) | compare |
| b3446 | yrhB | +0.5 | 3.4 | hypothetical protein (NCBI) | compare |
| b3495 | uspA | +0.5 | 4.7 | universal stress global response regulator (NCBI) | compare |
| b1482 | osmC | +0.5 | 1.4 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b3146 | yraL | +0.5 | 3.8 | predicted methyltransferase (NCBI) | compare |
| b4443 | gcvB | +0.5 | 0.3 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b4071 | nrfB | +0.5 | 2.2 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b3672 | ivbL | +0.5 | 2.3 | ilvB operon leader peptide (NCBI) | compare |
| b1355 | b1355 | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1243 | oppA | +0.5 | 3.8 | oligopeptide transporter subunit (NCBI) | compare |
| b2285 | nuoE | +0.5 | 1.4 | NADH dehydrogenase subunit E (NCBI) | compare |
| b3779 | gpp | +0.5 | 4.3 | guanosine pentaphosphatase/exopolyphosphatase (NCBI) | compare |
| b4651 | yibW | +0.5 | 0.3 | no description | compare |
| b1246 | oppD | +0.5 | 3.0 | oligopeptide transporter ATP-binding component (NCBI) | compare |
| b2659 | b2659 | +0.5 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3516 | gadX | +0.5 | 4.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2278 | nuoL | +0.5 | 3.3 | NADH dehydrogenase subunit L (NCBI) | compare |
| b2195 | ccmG | +0.5 | 1.9 | periplasmic thioredoxin of cytochrome c-type biogenesis (NCBI) | compare |
| b1976 | b1976 | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b2281 | nuoI | +0.5 | 1.6 | NADH dehydrogenase subunit I (NCBI) | compare |
| b4062 | soxS | +0.5 | 1.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2010 | dacD | +0.4 | 2.4 | penicillin binding protein 6b (VIMSS) | compare |
| b2637 | yfjT | +0.4 | 1.4 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b1259 | yciG | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1269 | rluB | +0.4 | 2.3 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b4066 | yjcF | +0.4 | 0.3 | hypothetical protein (NCBI) | compare |
| b3807 | cyaY | +0.4 | 2.7 | frataxin-like protein (NCBI) | compare |
| b1380 | ldhA | +0.4 | 1.4 | D-lactate dehydrogenase (NCBI) | compare |
| b2845 | yqeG | +0.4 | 3.9 | predicted transporter (NCBI) | compare |
| b1493 | gadB | +0.4 | 0.7 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1999 | yeeP | +0.4 | 2.9 | putative histone (VIMSS) | compare |
| b4431 | rprA | +0.4 | 1.5 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b1249 | cls | +0.4 | 2.8 | cardiolipin synthetase (NCBI) | compare |
| b4049 | dusA | +0.4 | 3.2 | tRNA-dihydrouridine synthase A (RefSeq) | compare |
| b1630 | rsxD | +0.4 | 2.4 | electron transport complex protein RnfD (NCBI) | compare |
| b2277 | nuoM | +0.4 | 2.0 | NADH dehydrogenase subunit M (NCBI) | compare |
| b3443 | yrhA | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3507 | dctR | +0.4 | 3.5 | protein involved in metabolism of C4-dicarboxylates (Katherine Huang) | compare |
| b4409 | blr | +0.4 | 2.0 | beta-lactam resistance membrane protein (NCBI) | compare |
| b2398 | yfeC | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2911 | ssrS | +0.4 | 0.7 | 6S regulatory RNA (NCBI) | compare |
| b1642 | slyA | +0.4 | 1.5 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b2280 | nuoJ | +0.4 | 2.3 | NADH dehydrogenase subunit J (NCBI) | compare |
| b2991 | hybF | +0.4 | 1.7 | protein involved with the maturation of hydrogenases 1 and 2 (NCBI) | compare |
| b2283 | nuoG | +0.4 | 2.5 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b4215 | ytfI | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b0502 | ylbG | +0.4 | 1.7 | no description | compare |
| b1777 | b1777 | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1141 | ymfG | +0.4 | 1.6 | e14 prophage; predicted excisionase (NCBI) | compare |
| b1837 | yebW | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1583 | ynfB | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b2229 | b2229 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1960 | vsr | +0.4 | 1.8 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b1672 | ydhW | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b4041 | plsB | +0.4 | 1.1 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b0357 | yaiN | +0.4 | 0.8 | putative alpha helix chain (VIMSS) | compare |
| b1139 | lit | +0.4 | 2.2 | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression (NCBI) | compare |
| b0303 | ykgI | +0.4 | 0.4 | orf, hypothetical protein (VIMSS) | compare |
| b1842 | holE | +0.4 | 1.1 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1600 | mdtJ | +0.4 | 0.8 | multidrug efflux system transporter (NCBI) | compare |
| b0982 | yccY | +0.4 | 1.8 | putative phosphatase (VIMSS) | compare |
| b0616 | citE | +0.4 | 1.9 | citrate lyase beta chain (acyl lyase subunit) (VIMSS) | compare |
| b1562 | hokD | +0.4 | 1.5 | Qin prophage; small toxic polypeptide (NCBI) | compare |
| b1735 | chbR | +0.4 | 1.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4692 | oweE | +0.3 | 0.9 | no description | compare |
| b1799 | yeaT | +0.3 | 1.9 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b2204 | napH | +0.3 | 1.6 | quinol dehydrogenase membrane component (NCBI) | compare |
| b1607 | ydgC | +0.3 | 1.1 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b1448 | yncA | +0.3 | 1.3 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3043 | ygiL | +0.3 | 2.0 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2288 | nuoA | +0.3 | 1.5 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b1040 | csgD | +0.3 | 0.8 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b2409 | yfeR | +0.3 | 1.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3500 | gor | +0.3 | 0.8 | glutathione reductase (NCBI) | compare |
| b2725 | hycA | +0.3 | 1.4 | regulator of the transcriptional regulator FhlA (NCBI) | compare |
| b2897 | ygfY | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b2326 | yfcM | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b3414 | gntY | +0.3 | 2.1 | predicted gluconate transport associated protein (NCBI) | compare |
| b1344 | ydaO | +0.3 | 1.5 | predicted C32 tRNA thiolase (NCBI) | compare |
| b3555 | yiaG | +0.3 | 1.8 | predicted transcriptional regulator (NCBI) | compare |
| b0461 | ybaJ | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b4396 | rob | +0.3 | 2.6 | DNA-binding transcriptional activator (NCBI) | compare |
| b0980 | appA | +0.3 | 2.5 | phosphoanhydride phosphorylase (NCBI) | compare |
| b1640 | ydhH | +0.3 | 2.0 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b2092 | gatC | +0.3 | 2.2 | galactitol-specific enzyme IIC component of PTS (NCBI) | compare |
| b1134 | ymfB | +0.3 | 1.3 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b3193 | yrbD | +0.3 | 2.7 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3884 | yihW | +0.3 | 2.2 | putative DEOR-type transcriptional regulator (VIMSS) | compare |
| b4108 | phnA | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b0730 | mngR | +0.3 | 0.7 | DNA-binding transcriptional dual regulator, fatty-acyl-binding (NCBI) | compare |
| b1520 | b1520 | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3195 | yrbF | +0.3 | 2.7 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b2346 | vacJ | +0.3 | 2.4 | predicted lipoprotein (NCBI) | compare |
| b3961 | oxyR | +0.3 | 2.3 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1218 | chaC | +0.3 | 2.0 | regulatory protein for cation transport (RefSeq) | compare |
| b2096 | gatY | +0.3 | 1.7 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b4064 | yjcD | +0.3 | 2.7 | predicted permease (NCBI) | compare |
| b0535 | fimZ | +0.3 | 1.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0388 | aroL | +0.3 | 2.2 | shikimate kinase II (NCBI) | compare |
| b4397 | creA | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b4653 | yicT | +0.3 | 0.8 | no description | compare |
| b0851 | nfsA | +0.3 | 1.9 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b4050 | yjbO | +0.3 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b4546 | ypeB | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b0104 | guaC | +0.3 | 2.5 | guanosine 5'-monophosphate oxidoreductase (NCBI) | compare |
| b2759 | ygcK | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b3708 | tnaA | +0.3 | 2.9 | tryptophanase (VIMSS) | compare |
| b3149 | yraO | +0.3 | 2.2 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b1156 | tfaE | +0.3 | 1.7 | e14 prophage; predicted tail fiber assembly protein (NCBI) | compare |
| b1710 | btuE | +0.3 | 1.7 | predicted glutathione peroxidase (NCBI) | compare |
| b3468 | yhhN | +0.3 | 2.6 | conserved inner membrane protein (NCBI) | compare |
| b1333 | uspE | +0.3 | 1.3 | stress-induced protein (NCBI) | compare |
| b0931 | pncB | +0.3 | 2.0 | nicotinate phosphoribosyltransferase (NCBI) | compare |
| b2094 | gatA | +0.3 | 1.7 | galactitol-specific enzyme IIA component of PTS (NCBI) | compare |
| b1591 | b1591 | +0.3 | 1.0 | putative oxidoreductase component (VIMSS) | compare |
| b2829 | ptsP | +0.3 | 2.8 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3166 | truB | +0.3 | 2.4 | tRNA pseudouridine synthase B (NCBI) | compare |
| b1725 | yniA | +0.3 | 1.9 | predicted phosphotransferase/kinase (NCBI) | compare |
| b0871 | poxB | +0.3 | 2.2 | pyruvate dehydrogenase (NCBI) | compare |
| b1674 | ydhY | +0.3 | 2.0 | predicted 4Fe-4S ferridoxin-type protein (NCBI) | compare |
| b1765 | ydjA | +0.3 | 0.4 | predicted oxidoreductase (NCBI) | compare |
| b4590 | ybfK | +0.3 | 0.4 | hypothetical protein (RefSeq) | compare |
| b2287 | nuoB | +0.3 | 1.3 | NADH dehydrogenase subunit B (NCBI) | compare |
| b3207 | yrbL | +0.3 | 1.7 | hypothetical protein (NCBI) | compare |
| b3643 | rph | +0.3 | 1.4 | ribonuclease PH (NCBI) | compare |
| b0485 | ybaS | +0.3 | 2.4 | predicted glutaminase (NCBI) | compare |
| b4100 | phnH | +0.3 | 1.2 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b1465 | narV | +0.3 | 1.2 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b4282 | yjhE | +0.3 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0858 | ybjO | +0.3 | 1.2 | predicted inner membrane protein (NCBI) | compare |
| b4435 | isrC | +0.3 | 1.0 | unknown RNA (NCBI) | compare |
| b3834 | yigP | +0.3 | 2.1 | hypothetical protein (NCBI) | compare |
| b0736 | ybgC | +0.3 | 1.5 | predicted acyl-CoA thioesterase (NCBI) | compare |
| b1245 | oppC | +0.3 | 1.6 | oligopeptide transporter subunit (NCBI) | compare |
| b2582 | trxC | +0.3 | 1.0 | thioredoxin 2 (NCBI) | compare |
| b1400 | paaY | +0.3 | 1.1 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b1503 | ydeR | +0.3 | 1.2 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b2165 | yeiN | +0.3 | 1.5 | hypothetical protein (NCBI) | compare |
| b1530 | marR | +0.3 | 1.2 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b3341 | rpsG | +0.3 | 0.6 | 30S ribosomal protein S7 (NCBI) | compare |
| b2643 | yfjX | +0.3 | 1.3 | CP4-57 prophage; predicted antirestriction protein (NCBI) | compare |
| b3191 | yrbB | +0.3 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3192 | yrbC | +0.3 | 2.3 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3816 | corA | +0.3 | 2.2 | magnesium/nickel/cobalt transporter (NCBI) | compare |
| b3071 | yqjI | +0.3 | 1.6 | predicted transcriptional regulator (NCBI) | compare |
| b3890 | yiiF | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0786 | ybhL | +0.3 | 2.2 | predicted inner membrane protein (NCBI) | compare |
| b3228 | sspB | +0.3 | 1.5 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b1548 | nohA | +0.3 | 0.9 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b2636 | b2636 | +0.3 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2151 | galS | +0.3 | 2.2 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3032 | cpdA | +0.3 | 2.1 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b1183 | umuD | +0.3 | 0.6 | DNA polymerase V, subunit D (NCBI) | compare |