Experiment set4S183 for Rahnella sp. WP5

Compare to:

NL-CCM; vial

200 most important genes:

  gene name fitness t score description  
EX31_RS18255 -3.1 -5.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS14405 -2.5 -2.9 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS14550 -2.3 -3.6 Trk system potassium transporter TrkH compare
EX31_RS07785 -2.0 -2.0 carbon storage regulator CsrA compare
EX31_RS02520 -1.9 -2.1 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS14335 -1.8 -4.0 serine O-acetyltransferase compare
EX31_RS00170 -1.7 -2.1 DUF1471 domain-containing protein compare
EX31_RS22250 -1.7 -3.0 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS01970 -1.7 -1.4 hypothetical protein compare
EX31_RS23490 -1.5 -2.8 cell envelope integrity protein TolA compare
EX31_RS22270 -1.4 -1.3 competence protein ComEA compare
EX31_RS20670 -1.4 -1.3 RNA chaperone/antiterminator CspA compare
EX31_RS02515 -1.4 -1.6 PAS domain-containing protein compare
EX31_RS18445 -1.4 -1.9 DUF2732 domain-containing protein compare
EX31_RS20495 -1.3 -5.9 outer membrane protein assembly factor BamB compare
EX31_RS11540 -1.3 -3.6 dCTP deaminase compare
EX31_RS00010 -1.3 -2.0 type II toxin-antitoxin system HipA family toxin compare
EX31_RS20735 -1.3 -3.0 exodeoxyribonuclease V subunit beta compare
EX31_RS18525 -1.3 -3.4 DNA translocase FtsK compare
EX31_RS25595 -1.3 -1.7 hypothetical protein compare
EX31_RS09550 -1.2 -2.1 flagellar assembly protein FliH compare
EX31_RS03790 -1.2 -2.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS14325 -1.2 -8.0 envelope stress sensor histidine kinase CpxA compare
EX31_RS25415 -1.2 -1.3 helix-turn-helix domain-containing protein compare
EX31_RS14340 -1.2 -1.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS25365 -1.2 -1.3 50S ribosomal protein L31 compare
EX31_RS23500 -1.1 -2.3 peptidoglycan-associated lipoprotein Pal compare
EX31_RS10020 -1.1 -2.2 YciI family protein compare
EX31_RS15880 -1.1 -4.9 nitrogen regulation protein NR(I) compare
EX31_RS23320 -1.1 -2.8 alpha-D-glucose phosphate-specific phosphoglucomutase compare
EX31_RS12400 -1.1 -1.6 RNA polymerase factor sigma-54 compare
EX31_RS24600 -1.1 -1.8 hypothetical protein compare
EX31_RS02625 -1.1 -1.7 hypothetical protein compare
EX31_RS21850 -1.0 -1.2 pyridoxine 5'-phosphate synthase compare
EX31_RS18540 -1.0 -0.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS04645 -1.0 -1.0 DUF2559 family protein compare
EX31_RS11105 -1.0 -2.8 cytosine deaminase compare
EX31_RS24670 -1.0 -1.8 peptidoglycan editing factor PgeF compare
EX31_RS07415 -0.9 -1.1 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS16680 -0.9 -1.7 enoyl-CoA hydratase compare
EX31_RS26075 -0.9 -1.4 hypothetical protein compare
EX31_RS11675 -0.9 -1.8 Holliday junction branch migration protein RuvA compare
EX31_RS02385 -0.9 -1.2 hypothetical protein compare
EX31_RS02295 -0.9 -1.4 gluconate 2-dehydrogenase subunit 3 family protein compare
EX31_RS14095 -0.8 -2.2 yfeABCD regulator yfeE compare
EX31_RS03310 -0.8 -2.0 hypothetical protein compare
EX31_RS23485 -0.8 -0.9 colicin uptake protein TolR compare
EX31_RS06985 -0.7 -1.3 iron export ABC transporter permease subunit FetB compare
EX31_RS09820 -0.7 -1.8 fructose-6-phosphate aldolase compare
EX31_RS10435 -0.7 -2.6 biotin-dependent carboxyltransferase family protein compare
EX31_RS06055 -0.7 -1.9 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS24140 -0.7 -1.1 DUF2594 family protein compare
EX31_RS17640 -0.7 -1.7 TetR/AcrR family transcriptional regulator compare
EX31_RS11125 -0.7 -1.3 ABC transporter ATP-binding protein compare
EX31_RS22800 -0.7 -1.9 ArsC family reductase compare
EX31_RS06680 -0.7 -0.8 cellulose biosynthesis protein BcsF compare
EX31_RS25300 -0.7 -1.1 YqaE/Pmp3 family membrane protein compare
EX31_RS24450 -0.7 -1.9 aminodeoxychorismate lyase compare
EX31_RS02130 -0.7 -2.0 amino acid-binding protein compare
EX31_RS12510 -0.7 -4.9 FAD-dependent oxidoreductase compare
EX31_RS22430 -0.7 -0.7 hemolysin expression modulator Hha compare
EX31_RS06565 -0.7 -1.8 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
EX31_RS03900 -0.7 -2.0 molecular chaperone DnaK compare
EX31_RS09580 -0.7 -0.7 flagellar motor switch protein FliN compare
EX31_RS18040 -0.7 -5.4 porin OmpA compare
EX31_RS13335 -0.6 -0.6 transcriptional regulator compare
EX31_RS06225 -0.6 -0.9 hypothetical protein compare
EX31_RS08140 -0.6 -1.3 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS15875 -0.6 -4.9 nitrogen regulation protein NR(II) compare
EX31_RS22260 -0.6 -2.7 DNA-binding protein HU-beta compare
EX31_RS19435 -0.6 -1.0 NADH-quinone oxidoreductase subunit A compare
EX31_RS10720 -0.6 -2.4 NAD(P)H:quinone oxidoreductase compare
EX31_RS22245 -0.6 -1.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS25410 -0.6 -0.9 transposase compare
EX31_RS03775 -0.6 -1.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS07465 -0.6 -1.6 LysR family transcriptional regulator compare
EX31_RS02215 -0.6 -1.5 isopentenyl-diphosphate Delta-isomerase compare
EX31_RS20840 -0.6 -1.7 hypothetical protein compare
EX31_RS04035 -0.6 -4.5 phosphoserine phosphatase compare
EX31_RS16325 -0.6 -1.4 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
EX31_RS11525 -0.6 -1.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS04710 -0.6 -1.7 adenine-specific DNA-methyltransferase compare
EX31_RS01120 -0.6 -2.5 MFS transporter compare
EX31_RS24260 -0.6 -0.6 YceK/YidQ family lipoprotein compare
EX31_RS12230 -0.6 -4.9 RNase E specificity factor CsrD compare
EX31_RS02530 -0.5 -0.9 ABC transporter ATP-binding protein compare
EX31_RS10750 -0.5 -1.8 chromate transporter compare
EX31_RS14310 -0.5 -1.9 6-phosphofructokinase compare
EX31_RS15155 -0.5 -1.2 diaminopimelate epimerase compare
EX31_RS21925 -0.5 -2.3 3-mercaptopyruvate sulfurtransferase compare
EX31_RS24345 -0.5 -2.1 cytochrome b compare
EX31_RS13745 -0.5 -2.0 pyridoxal kinase PdxY compare
EX31_RS06820 -0.5 -1.6 amino acid ABC transporter permease compare
EX31_RS10770 -0.5 -2.7 HlyD family secretion protein compare
EX31_RS13480 -0.5 -2.0 site-specific tyrosine recombinase XerD compare
EX31_RS21470 -0.5 -3.5 phosphoglycerate dehydrogenase compare
EX31_RS00935 -0.5 -2.4 LysR family transcriptional regulator compare
EX31_RS16675 -0.5 -1.3 histidine utilization repressor compare
EX31_RS23440 -0.5 -1.1 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS20895 -0.5 -1.6 hypothetical protein compare
EX31_RS09650 -0.5 -0.8 GrxA family glutaredoxin compare
EX31_RS24220 -0.5 -0.7 hypothetical protein compare
EX31_RS03395 -0.5 -2.6 YacL family protein compare
EX31_RS23940 -0.5 -1.7 ABC transporter permease compare
EX31_RS11690 -0.5 -0.9 dihydroneopterin triphosphate diphosphatase compare
EX31_RS09730 -0.5 -2.5 sugar ABC transporter substrate-binding protein compare
EX31_RS25645 -0.5 -0.7 K(+)-transporting ATPase subunit F compare
EX31_RS22330 -0.5 -2.1 hypothetical protein compare
EX31_RS23575 -0.5 -1.8 galactose-1-phosphate uridylyltransferase compare
EX31_RS02235 -0.5 -1.6 helix-turn-helix transcriptional regulator compare
EX31_RS18305 -0.5 -1.1 tail fiber assembly protein compare
EX31_RS07010 -0.5 -1.6 ABC transporter ATP-binding protein compare
EX31_RS00960 -0.5 -1.4 hypothetical protein compare
EX31_RS22810 -0.5 -1.1 helix-turn-helix domain-containing protein compare
EX31_RS20435 -0.5 -2.4 NAD(P)H-dependent oxidoreductase compare
EX31_RS23965 -0.5 -1.5 hypothetical protein compare
EX31_RS21190 -0.5 -1.3 ribonuclease HI compare
EX31_RS15165 -0.5 -1.9 tyrosine recombinase XerC compare
EX31_RS26065 -0.5 -1.4 IS630 family transposase compare
EX31_RS18600 -0.5 -1.7 ubiquinone-dependent pyruvate dehydrogenase compare
EX31_RS15865 -0.5 -3.7 ribosome-dependent GTPase TypA compare
EX31_RS10735 -0.4 -1.6 helix-turn-helix transcriptional regulator compare
EX31_RS23495 -0.4 -1.7 Tol-Pal system protein TolB compare
EX31_RS12825 -0.4 -2.5 ornithine carbamoyltransferase compare
EX31_RS06265 -0.4 -2.1 MipA/OmpV family protein compare
EX31_RS04510 -0.4 -3.9 LysE family translocator compare
EX31_RS09670 -0.4 -1.0 bleomycin resistance protein compare
EX31_RS07830 -0.4 -2.1 murein hydrolase activator NlpD compare
EX31_RS17865 -0.4 -1.8 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
EX31_RS12875 -0.4 -0.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS14180 -0.4 -3.5 argininosuccinate lyase compare
EX31_RS24385 -0.4 -1.2 dihydroorotase compare
EX31_RS02345 -0.4 -1.6 hypothetical protein compare
EX31_RS14185 -0.4 -2.6 acetylglutamate kinase compare
EX31_RS09925 -0.4 -1.0 alpha-ribazole phosphatase compare
EX31_RS05785 -0.4 -1.4 superoxide dismutase [Mn] compare
EX31_RS11315 -0.4 -1.5 flagellar basal body rod protein FlgB compare
EX31_RS07445 -0.4 -1.3 amino acid ABC transporter permease compare
EX31_RS13445 -0.4 -3.4 argininosuccinate synthase compare
EX31_RS08515 -0.4 -3.7 lipoprotein NlpI compare
EX31_RS21300 -0.4 -1.0 acyl carrier protein compare
EX31_RS14320 -0.4 -1.0 envelope stress response regulator transcription factor CpxR compare
EX31_RS09490 -0.4 -0.4 hypothetical protein compare
EX31_RS25895 -0.4 -1.4 DinI-like family protein compare
EX31_RS01045 -0.4 -1.7 VOC family protein compare
EX31_RS16845 -0.4 -1.2 DNA-binding protein HU-alpha compare
EX31_RS11650 -0.4 -1.5 glucose 1-dehydrogenase compare
EX31_RS06900 -0.4 -2.0 MFS transporter compare
EX31_RS17265 -0.4 -1.3 hypothetical protein compare
EX31_RS08260 -0.4 -1.3 methylated-DNA--[protein]-cysteine S-methyltransferase compare
EX31_RS11855 -0.4 -1.4 CsbD family protein compare
EX31_RS11400 -0.4 -1.9 chemotaxis protein CheW compare
EX31_RS17295 -0.4 -1.1 hypothetical protein compare
EX31_RS23415 -0.4 -2.3 citrate synthase compare
EX31_RS25215 -0.4 -1.1 polysulfide reductase NrfD compare
EX31_RS15120 -0.4 -1.2 tRNA-Leu compare
EX31_RS16995 -0.4 -2.7 MFS transporter compare
EX31_RS25110 -0.4 -1.1 DUF2474 domain-containing protein compare
EX31_RS14410 -0.4 -3.6 glycosyltransferase family 9 protein compare
EX31_RS14115 -0.4 -1.2 metal-dependent hydrolase compare
EX31_RS10430 -0.4 -1.8 5-oxoprolinase subunit PxpB compare
EX31_RS16330 -0.4 -1.9 endoribonuclease MazF compare
EX31_RS19600 -0.4 -2.1 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS07485 -0.4 -1.7 anion permease compare
EX31_RS19205 -0.4 -1.3 50S ribosomal protein L25 compare
EX31_RS24945 -0.4 -0.5 5S ribosomal RNA compare
EX31_RS22440 -0.4 -1.5 hypothetical protein compare
EX31_RS10665 -0.4 -1.7 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
EX31_RS06455 -0.4 -1.4 sugar ABC transporter permease compare
EX31_RS09985 -0.4 -1.7 BON domain-containing protein compare
EX31_RS26100 -0.4 -1.0 AraC family transcriptional regulator compare
EX31_RS09375 -0.4 -0.8 gamma-glutamylcyclotransferase compare
EX31_RS19150 -0.4 -2.1 hypothetical protein compare
EX31_RS07245 -0.4 -1.7 ABC transporter ATP-binding protein compare
EX31_RS26005 -0.4 -1.4 transposase compare
EX31_RS18985 -0.4 -1.5 glutamine ABC transporter ATP-binding protein GlnQ compare
EX31_RS01510 -0.4 -0.9 DinI-like family protein compare
EX31_RS05040 -0.4 -1.8 helix-turn-helix domain-containing protein compare
EX31_RS17010 -0.4 -1.5 sugar ABC transporter permease compare
EX31_RS08825 -0.4 -2.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS00580 -0.4 -0.9 LysR family transcriptional regulator compare
EX31_RS20265 -0.4 -1.1 YaiI/YqxD family protein compare
EX31_RS01090 -0.4 -1.7 metal ABC transporter permease compare
EX31_RS06635 -0.4 -1.2 L-arabinose isomerase compare
EX31_RS03890 -0.4 -1.5 Na+/H+ antiporter NhaA compare
EX31_RS06800 -0.4 -1.2 ABC transporter permease compare
EX31_RS03330 -0.4 -1.2 hypoxanthine phosphoribosyltransferase compare
EX31_RS16965 -0.4 -1.7 iron ABC transporter permease compare
EX31_RS25910 -0.4 -0.5 hypothetical protein compare
EX31_RS20700 -0.4 -0.7 GNAT family N-acetyltransferase compare
EX31_RS07110 -0.4 -1.9 sulfurtransferase compare
EX31_RS20925 -0.4 -0.8 hypothetical protein compare
EX31_RS01075 -0.4 -1.7 manganese-binding transcriptional regulator MntR compare
EX31_RS01370 -0.4 -1.6 oxidoreductase compare
EX31_RS21475 -0.4 -1.3 acid resistance repetitive basic protein Asr compare
EX31_RS15095 -0.4 -0.9 O-antigen assembly polymerase compare
EX31_RS09225 -0.4 -0.8 iron-containing alcohol dehydrogenase family protein compare
EX31_RS11440 -0.4 -2.0 histidinol dehydrogenase compare
EX31_RS15405 -0.4 -1.3 nitrogen fixation protein NifQ compare
EX31_RS02920 -0.4 -0.9 glycosyltransferase compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nl-ccm; vial experiments