Experiment set4S120 for Rahnella sp. WP5

Compare to:

NLN

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS08130 +1.4 2.9 accessory factor UbiK family protein compare
EX31_RS11845 +1.3 2.5 repressor LexA compare
EX31_RS20480 +1.2 7.9 hypothetical protein compare
EX31_RS02365 +1.1 1.6 hypothetical protein compare
EX31_RS01970 +1.1 1.5 hypothetical protein compare
EX31_RS11185 +1.1 5.0 MBL fold metallo-hydrolase compare
EX31_RS19420 +1.0 2.7 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS19405 +1.0 3.7 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS09080 +1.0 2.2 LysR family transcriptional regulator compare
EX31_RS01710 +1.0 1.5 hypothetical protein compare
EX31_RS01260 +0.9 1.2 YebG family protein compare
EX31_RS14610 +0.9 3.1 twin-arginine translocase subunit TatE compare
EX31_RS14160 +0.9 6.1 HTH-type transcriptional repressor FabR compare
EX31_RS09520 +0.8 2.5 hypothetical protein compare
EX31_RS14620 +0.8 1.7 SCP2 domain-containing protein compare
EX31_RS19380 +0.8 4.7 NADH-quinone oxidoreductase subunit M compare
EX31_RS20690 +0.8 7.5 diguanylate cyclase compare
EX31_RS19390 +0.8 2.7 NADH-quinone oxidoreductase subunit NuoK compare
EX31_RS19400 +0.8 2.5 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS17465 +0.8 2.6 hypothetical protein compare
EX31_RS22205 +0.8 5.9 cytochrome o ubiquinol oxidase subunit IV compare
EX31_RS19385 +0.8 4.0 NADH-quinone oxidoreductase subunit L compare
EX31_RS02180 +0.8 2.1 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS23260 +0.8 5.4 N-acetylglucosamine-6-phosphate deacetylase compare
EX31_RS05455 +0.8 5.6 hypothetical protein compare
EX31_RS19430 +0.8 3.8 NADH-quinone oxidoreductase subunit B compare
EX31_RS09220 +0.8 1.3 MurR/RpiR family transcriptional regulator compare
EX31_RS12500 +0.8 6.3 stringent starvation protein A compare
EX31_RS22210 +0.8 5.4 cytochrome o ubiquinol oxidase subunit III compare
EX31_RS19425 +0.7 3.9 NADH-quinone oxidoreductase subunit C/D compare
EX31_RS19375 +0.7 3.4 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS09205 +0.7 2.0 siderophore-iron reductase FhuF compare
EX31_RS05485 +0.7 5.6 endoglucanase compare
EX31_RS22215 +0.7 6.5 cytochrome o ubiquinol oxidase subunit I compare
EX31_RS24480 +0.7 1.9 purine nucleoside phosphoramidase compare
EX31_RS04800 +0.7 5.6 two-component system response regulator OmpR compare
EX31_RS05855 +0.7 2.4 glycine--tRNA ligase subunit beta compare
EX31_RS19395 +0.7 1.6 NADH-quinone oxidoreductase subunit J compare
EX31_RS01760 +0.7 4.0 hypothetical protein compare
EX31_RS01590 +0.7 2.4 phage tail assembly protein T compare
EX31_RS05595 +0.7 5.4 MarR family transcriptional regulator compare
EX31_RS22200 +0.7 5.5 protoheme IX farnesyltransferase compare
EX31_RS15065 +0.6 5.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
EX31_RS05290 +0.6 3.2 TetR/AcrR family transcriptional regulator compare
EX31_RS01595 +0.6 1.1 phage minor tail protein G compare
EX31_RS19415 +0.6 2.4 NADH-quinone oxidoreductase subunit NuoF compare
EX31_RS01615 +0.6 2.0 DNA breaking-rejoining protein compare
EX31_RS15920 +0.6 2.9 YihD family protein compare
EX31_RS01985 +0.6 1.9 type VI secretion system lipoprotein TssJ compare
EX31_RS17005 +0.6 2.7 carbohydrate ABC transporter permease compare
EX31_RS08650 +0.6 2.6 transcriptional regulator ArgR compare
EX31_RS02700 +0.6 2.7 YggU family protein compare
EX31_RS01480 +0.6 2.5 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
EX31_RS19410 +0.6 3.3 NADH-quinone oxidoreductase subunit NuoG compare
EX31_RS10750 +0.6 2.2 chromate transporter compare
EX31_RS21320 +0.6 2.3 5S ribosomal RNA compare
EX31_RS09335 +0.6 2.3 hypothetical protein compare
EX31_RS07200 +0.6 3.4 FNR family transcription factor compare
EX31_RS02310 +0.6 1.2 hypothetical protein compare
EX31_RS09140 +0.6 2.5 cellulase family glycosylhydrolase compare
EX31_RS14600 +0.6 2.5 Sec-independent protein translocase subunit TatC compare
EX31_RS07965 +0.6 5.0 two-component sensor histidine kinase BarA compare
EX31_RS06320 +0.5 1.8 YnjH family protein compare
EX31_RS20105 +0.5 2.3 tRNA-Val compare
EX31_RS10955 +0.5 1.2 AI-2E family transporter compare
EX31_RS02920 +0.5 1.4 glycosyltransferase compare
EX31_RS25660 +0.5 1.6 multidrug efflux pump-associated protein, AcrZ family compare
EX31_RS21300 +0.5 1.0 acyl carrier protein compare
EX31_RS09535 +0.5 1.3 flagellar hook-basal body complex protein FliE compare
EX31_RS00940 +0.5 1.8 manganese efflux pump MntP compare
EX31_RS25140 +0.5 1.2 AlpA family transcriptional regulator compare
EX31_RS09775 +0.5 1.0 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS18570 +0.5 0.7 cold shock-like protein CspD compare
EX31_RS01280 +0.5 1.6 SgcJ/EcaC family oxidoreductase compare
EX31_RS06330 +0.5 1.9 exodeoxyribonuclease III compare
EX31_RS11195 +0.5 2.2 peptidylprolyl isomerase compare
EX31_RS06440 +0.5 3.0 heat shock protein HslJ compare
EX31_RS05460 +0.5 4.4 cellulose synthase operon protein YhjQ compare
EX31_RS07305 +0.5 2.1 siroheme synthase compare
EX31_RS09035 +0.5 3.8 fimbrial protein compare
EX31_RS18690 +0.5 3.2 HTH-type transcriptional regulator GalS compare
EX31_RS15350 +0.5 1.6 nitrogen fixation protein NifX compare
EX31_RS06755 +0.5 2.1 histidine ammonia-lyase compare
EX31_RS25410 +0.5 1.0 transposase compare
EX31_RS23255 +0.5 2.9 ROK family protein compare
EX31_RS05470 +0.5 4.3 cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB compare
EX31_RS07410 +0.5 1.3 NAD(P)H-dependent oxidoreductase compare
EX31_RS17750 +0.5 2.1 glutathione S-transferase family protein compare
EX31_RS03550 +0.5 1.6 DNA gyrase inhibitor YacG compare
EX31_RS17985 +0.5 1.6 acylphosphatase compare
EX31_RS12335 +0.5 2.9 PRD domain-containing protein compare
EX31_RS11115 +0.5 1.6 creatininase family protein compare
EX31_RS07240 +0.5 2.0 ABC transporter permease compare
EX31_RS05465 +0.5 4.4 UDP-forming cellulose synthase catalytic subunit compare
EX31_RS07630 +0.5 2.2 hypothetical protein compare
EX31_RS01135 +0.5 1.3 SDR family oxidoreductase compare
EX31_RS06595 +0.5 1.3 electron transport complex subunit E compare
EX31_RS25025 +0.5 0.8 DUF1272 domain-containing protein compare
EX31_RS24665 +0.4 3.2 transcription antiterminator/RNA stability regulator CspE compare
EX31_RS22220 +0.4 3.6 cytochrome o ubiquinol oxidase subunit II compare
EX31_RS06310 +0.4 1.8 NAD(P)H nitroreductase compare
EX31_RS09815 +0.4 1.4 2-keto-3-deoxygluconate transporter compare
EX31_RS05475 +0.4 4.3 cellulose biosynthesis protein BcsC compare
EX31_RS15605 +0.4 1.9 ABC transporter ATP-binding protein compare
EX31_RS06825 +0.4 1.3 amino acid ABC transporter ATP-binding protein compare
EX31_RS15070 +0.4 3.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
EX31_RS16955 +0.4 1.2 ABC transporter ATP-binding protein compare
EX31_RS01600 +0.4 1.9 tail fiber protein compare
EX31_RS06600 +0.4 2.4 electron transport complex subunit RsxG compare
EX31_RS07425 +0.4 2.5 MurR/RpiR family transcriptional regulator compare
EX31_RS21280 +0.4 0.9 hydroxymyristoyl-ACP dehydratase compare
EX31_RS21060 +0.4 2.2 methylthioribulose 1-phosphate dehydratase compare
EX31_RS25215 +0.4 1.4 polysulfide reductase NrfD compare
EX31_RS11560 +0.4 1.4 DUF1127 domain-containing protein compare
EX31_RS01815 +0.4 1.8 (S)-acetoin forming diacetyl reductase compare
EX31_RS25045 +0.4 2.0 IS5 family transposase compare
EX31_RS16515 +0.4 2.1 GGDEF domain-containing protein compare
EX31_RS13770 +0.4 2.0 glycine zipper 2TM domain-containing protein compare
EX31_RS10935 +0.4 2.8 transcription antiterminator/RNA stability regulator CspE compare
EX31_RS07025 +0.4 1.8 xanthine dehydrogenase small subunit compare
EX31_RS06800 +0.4 1.6 ABC transporter permease compare
EX31_RS22435 +0.4 3.0 Hha toxicity modulator TomB compare
EX31_RS05000 +0.4 2.0 glycerol-3-phosphate dehydrogenase compare
EX31_RS02580 +0.4 2.2 ABC transporter permease compare
EX31_RS20930 +0.4 0.9 hypothetical protein compare
EX31_RS02030 +0.4 2.0 ATP-binding cassette domain-containing protein compare
EX31_RS09790 +0.4 1.5 autoinducer 2 ABC transporter permease LsrD compare
EX31_RS11190 +0.4 1.7 hypothetical protein compare
EX31_RS10250 +0.4 2.1 MurR/RpiR family transcriptional regulator compare
EX31_RS12340 +0.4 2.4 hypothetical protein compare
EX31_RS06275 +0.4 1.5 D-hexose-6-phosphate mutarotase compare
EX31_RS01700 +0.4 1.2 chromosome partitioning protein ParB compare
EX31_RS19435 +0.4 1.3 NADH-quinone oxidoreductase subunit A compare
EX31_RS06470 +0.4 2.1 2-hydroxyacid dehydrogenase compare
EX31_RS10325 +0.4 1.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
EX31_RS02705 +0.4 2.6 XTP/dITP diphosphatase compare
EX31_RS00020 +0.4 2.3 GntR family transcriptional regulator compare
EX31_RS07180 +0.4 1.6 DNA endonuclease SmrA compare
EX31_RS01435 +0.4 3.0 TetR/AcrR family transcriptional regulator compare
EX31_RS11250 +0.4 2.2 amino acid ABC transporter ATP-binding protein compare
EX31_RS15890 +0.4 2.9 Der GTPase-activating protein YihI compare
EX31_RS25450 +0.4 1.4 helix-turn-helix domain-containing protein compare
EX31_RS01850 +0.4 1.0 type VI secretion system contractile sheath small subunit compare
EX31_RS17250 +0.4 1.4 DUF1493 family protein compare
EX31_RS22610 +0.4 2.0 ABC transporter ATP-binding protein compare
EX31_RS11350 +0.4 1.9 protein phosphatase CheZ compare
EX31_RS25840 +0.4 2.4 transposase compare
EX31_RS10270 +0.4 1.9 alpha-glucosidase compare
EX31_RS16625 +0.4 0.7 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS23455 +0.4 1.3 succinate--CoA ligase subunit alpha compare
EX31_RS10760 +0.4 2.1 TonB-dependent siderophore receptor compare
EX31_RS04230 +0.4 2.6 diguanylate cyclase compare
EX31_RS18835 +0.4 2.4 alpha/beta hydrolase compare
EX31_RS11825 +0.4 2.0 chorismate lyase compare
EX31_RS01005 +0.4 0.9 DotU family type IV/VI secretion system protein compare
EX31_RS03210 +0.4 1.8 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
EX31_RS10725 +0.4 1.2 plasmid maintenance protein CcdB compare
EX31_RS09215 +0.4 1.4 MFS transporter compare
EX31_RS00465 +0.4 1.8 efflux RND transporter periplasmic adaptor subunit compare
EX31_RS07060 +0.4 1.7 carbohydrate kinase family protein compare
EX31_RS18305 +0.4 1.6 tail fiber assembly protein compare
EX31_RS16615 +0.4 1.2 membrane protein compare
EX31_RS04795 +0.4 3.3 two-component system sensor histidine kinase EnvZ compare
EX31_RS06525 +0.4 2.6 hypothetical protein compare
EX31_RS10460 +0.4 2.2 ShlB/FhaC/HecB family hemolysin secretion/activation protein compare
EX31_RS24320 +0.4 1.0 DoxX family protein compare
EX31_RS00580 +0.4 1.3 LysR family transcriptional regulator compare
EX31_RS04235 +0.4 2.6 OmpA family protein compare
EX31_RS22050 +0.4 2.4 helix-turn-helix domain-containing protein compare
EX31_RS07220 +0.4 1.7 DUF1471 domain-containing protein compare
EX31_RS24065 +0.4 0.4 pyrimidine utilization flavin reductase protein F compare
EX31_RS03330 +0.4 1.5 hypoxanthine phosphoribosyltransferase compare
EX31_RS11755 +0.4 2.9 glyoxylate bypass operon transcriptional repressor IclR compare
EX31_RS19315 +0.4 1.6 2Fe-2S ferredoxin-like protein compare
EX31_RS14635 +0.4 1.5 DedA family protein compare
EX31_RS02850 +0.4 2.6 divalent metal cation transporter compare
EX31_RS14825 +0.4 2.3 cell division ATP-binding protein FtsE compare
EX31_RS06650 +0.4 1.8 L-arabinose ABC transporter ATP-binding protein AraG compare
EX31_RS01750 +0.4 2.2 hexulose-6-phosphate synthase compare
EX31_RS12180 +0.4 3.0 tRNA dihydrouridine synthase DusB compare
EX31_RS01790 +0.4 1.3 excisionase compare
EX31_RS20940 +0.4 1.3 AlpA family transcriptional regulator compare
EX31_RS14155 +0.3 2.3 YijD family membrane protein compare
EX31_RS17335 +0.3 2.2 DUF480 domain-containing protein compare
EX31_RS06810 +0.3 1.0 LysR family transcriptional regulator compare
EX31_RS01085 +0.3 1.1 ATP-binding cassette domain-containing protein compare
EX31_RS22565 +0.3 1.2 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
EX31_RS09245 +0.3 1.4 ABC transporter permease subunit compare
EX31_RS20000 +0.3 1.2 nuclear transport factor 2 family protein compare
EX31_RS11335 +0.3 0.7 flagellar protein FlhE compare
EX31_RS09005 +0.3 2.3 CadC family transcriptional regulator compare
EX31_RS01195 +0.3 1.7 SDR family oxidoreductase compare
EX31_RS13640 +0.3 2.3 L-valine transporter subunit YgaH compare
EX31_RS25415 +0.3 0.6 helix-turn-helix domain-containing protein compare
EX31_RS01780 +0.3 1.0 hypothetical protein compare
EX31_RS09250 +0.3 1.5 ABC transporter permease subunit compare
EX31_RS06920 +0.3 1.8 GlxA family transcriptional regulator compare
EX31_RS25590 +0.3 1.6 hypothetical protein compare
EX31_RS03675 +0.3 2.3 transcriptional regulator LeuO compare
EX31_RS09010 +0.3 2.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rahnella sp. WP5 in nln experiments