Experiment set4IT057 for Agrobacterium fabrum C58

Compare to:

R2A with Sisomicin sulfate salt 0.001 mM

200 most important genes:

  gene name fitness t score description  
Atu2294 -6.9 -6.7 aminoglycoside N6'-acetyltransferase conserved
Atu2682 -4.5 -7.5 hypothetical protein compare
Atu2295 -4.5 -7.2 alpha-glucosidase compare
Atu1030 -4.0 -2.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0434 -3.3 -3.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2728 -3.0 -5.9 beta (1-->2) glucan export ATP-binding protein compare
Atu0017 -3.0 -2.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2289 -2.9 -12.8 anthranilate synthase component I and II compare
Atu1844 -2.7 -4.4 Phosphoribosylformylglycinamidine synthetase compare
Atu0399 -2.5 -7.9 dihydroorotase compare
Atu1687 -2.5 -5.1 anthranilate phosphoribosyltransferase compare
Atu3469 -2.2 -3.3 phosphoglyceromutase compare
Atu4616 -2.2 -2.9 dTDP-4-dehydrorhamnose reductase compare
Atu0876 -2.1 -2.8 superoxide dismutase compare
Atu1359 -2.1 -1.6 dnaK deletion suppressor protein compare
Atu1028 -2.1 -3.6 hypothetical protein compare
Atu0103 -2.0 -7.5 penicillin-binding protein compare
Atu3763 -2.0 -2.2 hypothetical protein compare
Atu6098 -1.8 -1.0 transcriptional regulator, HTH family compare
Atu0298 -1.8 -6.2 orotidine 5 compare
Atu2710 -1.8 -8.0 hypothetical protein compare
Atu0031 -1.8 -2.2 PTS system, IIA component compare
Atu2692 -1.7 -4.0 intracellular septation protein compare
Atu0486 -1.7 -5.8 dihydroorotate dehydrogenase compare
Atu2207 -1.6 -5.2 two component sensor kinase compare
Atu1688 -1.6 -4.3 indole-3-glycerol-phosphate synthase compare
Atu0184 -1.6 -3.3 glucokinase compare
Atu1308 -1.5 -6.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1307 -1.5 -4.0 dihydroorotase compare
Atu1845 -1.5 -4.4 phosphoribosylformylglycinamidine synthase I compare
Atu1686 -1.5 -7.9 peptidyl-prolyl cis-trans isomerse D compare
Atu2113 -1.4 -2.9 N-acetylmuramoyl-L-alanine amidase compare
Atu0190 -1.4 -6.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4317 -1.4 -2.6 TetR family transcriptional regulator compare
Atu0188 -1.4 -4.5 ABC transporter, membrane spanning protein (peptide) compare
Atu1254 -1.4 -2.5 transcriptional regulator, ArsR family compare
Atu0598 -1.4 -5.7 phosphogluconate dehydratase compare
Atu0400 -1.4 -3.9 orotate phosphoribosyltransferase compare
Atu3754 -1.4 -7.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0346 -1.4 -3.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4217 -1.4 -2.0 TetR family transcriptional regulator compare
Atu0972 -1.4 -5.1 lipA protein compare
Atu0971 -1.4 -4.9 two component sensor kinase compare
Atu2464 -1.3 -3.4 formyltetrahydrofolate deformylase compare
Atu0225 -1.3 -1.3 hypothetical protein compare
Atu4773 -1.3 -2.1 two component response regulator compare
Atu1739 -1.3 -3.5 permease compare
Atu3008 -1.3 -1.5 hypothetical protein compare
Atu0331 -1.2 -3.9 sigma-54 modulation protein compare
Atu1062 -1.2 -2.1 phosphatidylserine synthase compare
Atu2620 -1.1 -1.7 hypothetical protein compare
Atu0322 -1.1 -4.9 enoyl CoA hydratase compare
Atu3634 -1.1 -3.9 penicillin-binding protein dacf precursor compare
Atu5125 -1.1 -3.6 GntR family transcriptional regulator compare
Atu4896 -1.1 -2.5 acetyltransferase compare
Atu0606 -1.1 -3.0 hypothetical protein compare
Atu0189 -1.1 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu3001 -1.1 -2.7 hypothetical protein compare
Atu3120 -1.1 -0.9 hypothetical protein compare
Atu4888 -1.1 -3.0 hypothetical protein compare
Atu0041 -1.1 -1.7 glutamine amidotransferase compare
Atu2684 -1.0 -1.2 hypothetical protein compare
Atu0039 -1.0 -2.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu4075 -1.0 -6.4 glycogen synthase compare
Atu3727 -1.0 -3.1 hypothetical protein compare
Atu1685 -1.0 -1.0 hypothetical protein compare
Atu1774 -1.0 -5.4 ABC transporter, substrate binding protein (peptide) compare
Atu2067 -1.0 -1.2 hypothetical protein compare
Atu6114 -1.0 -1.3 hypothetical protein compare
Atu2808 -1.0 -4.5 cobyric acid synthase compare
Atu0040 -1.0 -1.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2804 -1.0 -6.0 cobaltochelatase subunit compare
Atu4866 -1.0 -3.1 hypothetical protein compare
Atu1470 -1.0 -1.0 Camphor resistance protein compare
Atu2809 -1.0 -5.1 cobalamin biosynthesis protein compare
Atu2640 -1.0 -4.0 hypothetical protein compare
Atu1075 -0.9 -3.3 amidophosphoribosyltransferase compare
Atu1891 -0.9 -2.7 cobalamin biosynthesis protein compare
Atu2368 -0.9 -1.2 hypothetical protein compare
Atu2805 -0.9 -3.1 cobalamin synthesis protein compare
Atu0977 -0.9 -3.0 serine protease DO-like protease compare
Atu2675 -0.9 -2.3 hypothetical protein compare
Atu0026 -0.9 -0.9 hypothetical protein compare
Atu1323 -0.9 -2.1 hypothetical protein compare
Atu0025 -0.9 -1.3 hypothetical protein compare
Atu2439 -0.9 -0.9 hypothetical protein compare
Atu2799 -0.9 -2.8 precorrin-6x reductase compare
Atu1620 -0.9 -5.5 triosephosphate isomerase compare
Atu8138 -0.8 -1.3 hypothetical protein compare
Atu1140 -0.8 -3.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3017 -0.8 -1.4 phosphoglyceromutase compare
Atu0943 -0.8 -2.1 hypothetical protein compare
Atu3755 -0.8 -3.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0647 -0.8 -3.3 phosphoribosylamine--glycine ligase compare
Atu2349 -0.8 -1.4 hypothetical protein compare
Atu2125 -0.8 -1.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0043 -0.8 -1.8 imidazoleglycerol-phosphate dehydratase compare
Atu8056 -0.8 -0.8 hypothetical protein compare
Atu4792 -0.8 -0.9 hypothetical protein compare
Atu2831 -0.8 -3.0 glucose inhibited division protein A compare
Atu1850 -0.8 -2.3 phosphoribosylformylglycinamidine synthetase II compare
Atu0030 -0.8 -1.2 phosphocarrier protein HPr compare
Atu1031 -0.8 -1.5 hypothetical protein compare
Atu1446 -0.8 -1.6 two component response regulator compare
Atu4108 -0.8 -5.5 ribonuclease D compare
Atu2802 -0.8 -3.2 precorrin-8X methylmutase compare
Atu3750 -0.8 -1.8 thiamine-phosphate pyrophosphorylase compare
Atu0973 -0.8 -3.9 cycH protein compare
Atu4864 -0.8 -3.6 MarR family transcriptional regulator compare
Atu2045 -0.8 -3.7 HFLK protein compare
Atu0538 -0.8 -2.0 hypothetical protein compare
Atu2489 -0.8 -4.1 hypothetical protein compare
Atu1163 -0.8 -1.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1354 -0.8 -0.8 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4199 -0.7 -3.8 TetR family transcriptional regulator compare
Atu0422 -0.7 -1.0 ABC transporter, membrane spanning protein compare
Atu0777 -0.7 -0.7 hypothetical protein compare
Atu2798 -0.7 -2.7 precorrin-6y methyltransferase compare
Atu1141 -0.7 -2.3 Phosphoribosylglycinamide synthetase compare
Atu0894 -0.7 -1.3 ABC transporter, membrane spanning protein compare
Atu1542 -0.7 -2.5 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu3496 -0.7 -2.1 hypothetical protein compare
Atu8190 -0.7 -2.8 hypothetical protein compare
Atu3593 -0.7 -5.1 hypothetical protein compare
Atu2176 -0.7 -2.5 hypothetical protein compare
Atu4144 -0.7 -1.0 hypothetical protein compare
Atu4618 -0.7 -4.6 dTDP-rhamnose-3,5-epimerase compare
Atu4617 -0.7 -5.3 dTDP-D-glucose-4,6-dehydratase compare
Atu0272 -0.7 -2.3 transcriptional regulator, MarR family compare
Atu2790 -0.7 -1.7 3-isopropylmalate dehydratase, small subunit compare
Atu0535 -0.7 -2.8 hypothetical protein compare
Atu4889 -0.7 -3.1 hypothetical protein compare
Atu4841 -0.7 -4.1 DeoR family transcriptional regulator compare
Atu4878 -0.7 -2.1 hypothetical protein compare
Atu1588 -0.7 -3.6 homoserine dehydrogenase compare
Atu0029 -0.7 -2.4 S-adenosylhomocysteine hydrolase compare
Atu2796 -0.7 -2.6 precorrin-4 C11-methyltransferase compare
Atu2650 -0.7 -3.8 glycerol-3-phosphate dehydrogenase compare
Atu3476 -0.7 -3.0 AsnC family transcriptional regulator compare
Atu3016 -0.7 -3.0 phosphoglyceromutase compare
Atu3886 -0.7 -3.8 lysophospholipase compare
Atu4873 -0.7 -2.9 TetR family transcriptional regulator compare
Atu1021 -0.7 -1.7 outer membrane protein compare
Atu2036 -0.7 -4.5 acetolactate synthase III, large subunit compare
Atu3721 -0.7 -1.0 hypothetical protein compare
Atu4870 -0.7 -3.6 NADP-dependent quinone oxidoreductase compare
Atu0119 -0.7 -1.0 hypothetical protein compare
Atu0036 -0.7 -1.6 hypothetical protein compare
Atu3712 -0.7 -0.8 hypothetical protein compare
Atu2428 -0.7 -3.7 exopolysaccharide production protein PssB compare
Atu4614 -0.7 -4.6 glycosyltransferase compare
Atu2044 -0.7 -2.6 HFLC protein compare
Atu0925 -0.7 -2.2 hypothetical protein compare
Atu2267 -0.6 -3.0 hypothetical protein compare
Atu4840 -0.6 -1.8 hypothetical protein compare
Atu2040 -0.6 -1.9 phosphoserine phosphatase compare
Atu3739 -0.6 -1.3 phosphoglycerate kinase compare
Atu3963 -0.6 -2.9 GntR family transcriptional regulator compare
Atu2807 -0.6 -3.1 cob(I)alamin adenosyltransferase compare
Atu0045 -0.6 -3.6 heat shock chaperone compare
Atu0062 -0.6 -3.2 transcriptional regulator, ROK family compare
Atu4884 -0.6 -1.7 hypothetical protein compare
Atu4887 -0.6 -2.4 hypothetical protein compare
Atu4418 -0.6 -3.0 glutaryl-CoA dehydrogenase compare
Atu4893 -0.6 -1.8 hypothetical protein compare
Atu0458 -0.6 -2.9 hypothetical protein compare
Atu3443 -0.6 -2.3 hypothetical protein compare
Atu0693 -0.6 -3.4 PmbA/TldD related protein compare
Atu3707 -0.6 -1.2 phosphoserine aminotransferase compare
Atu5160 -0.6 -1.4 transcriptional regulator protein compare
Atu1619 -0.6 -1.9 protein-export membrane protein SECG compare
Atu2555 -0.6 -2.3 L-lysine 2,3-aminomutase compare
Atu1801 -0.6 -1.6 hypothetical protein compare
Atu3040 -0.6 -3.6 hypothetical protein compare
Atu1570 -0.6 -0.8 hypothetical protein compare
Atu3144 -0.6 -2.0 GntR family transcriptional regulator compare
Atu4872 -0.6 -3.7 LysR family transcriptional regulator compare
Atu3090 -0.6 -2.8 DNA polymerase III subunit epsilon compare
Atu0185 -0.6 -2.4 methylglyoxal synthase compare
Atu0986 -0.6 -0.9 hypothetical protein compare
Atu4862 -0.6 -4.4 IS21 family transposase compare
Atu3353 -0.6 -3.6 mannose-1-phosphate guanylyltransferase compare
Atu2722 -0.6 -2.9 porin compare
Atu0048 -0.6 -3.8 hypothetical protein compare
Atu3026 -0.6 -3.2 short chain dehydrogenase compare
Atu1103 -0.6 -1.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1371 -0.6 -2.2 glycerophosphoryl diester phosphodiesterase compare
Atu4855 -0.6 -4.9 conjugation protein compare
Atu1380 -0.6 -3.0 zinc metallopeptidase compare
Atu3311 -0.6 -3.9 phosphomannose isomerase compare
Atu2442 -0.6 -1.3 hypothetical protein compare
Atu4861 -0.6 -3.2 IS21 family transposase compare
Atu5485 -0.6 -1.6 hypothetical protein compare
Atu3522 -0.6 -1.8 glucans biosynthesis protein compare
Atu4880 -0.6 -3.3 AraC family transcriptional regulator compare
Atu0795 -0.6 -1.3 hypothetical protein compare
Atu3020 -0.6 -2.4 GntR family transcriptional regulator compare
Atu3014 -0.6 -0.8 hypothetical protein compare
Atu2052 -0.6 -2.8 hypothetical protein compare
Atu4868 -0.6 -3.8 oxidoreductase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sisomicin sulfate salt in Agrobacterium fabrum C58

For stress Sisomicin sulfate salt across organisms