Experiment set4IT056 for Methanococcus maripaludis S2

Compare to:

Formate deepwell casamino acid FREE

200 most detrimental genes:

  gene name fitness t score description  
MMP_RS01370 +3.6 30.0 acetate--CoA ligase family protein compare
MMP_RS08660 +1.5 8.6 DHH family phosphoesterase compare
MMP_RS03215 +1.3 10.4 MBL fold metallo-hydrolase compare
MMP_RS05535 +1.1 5.5 hypothetical protein compare
MMP_RS08280 +1.1 5.9 proteasome assembly chaperone family protein compare
MMP_RS07860 +1.0 1.4 hypothetical protein compare
MMP_RS05835 +0.8 1.4 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS03385 +0.7 1.5 cation diffusion facilitator family transporter compare
MMP_RS06770 +0.7 4.7 DHH family phosphoesterase compare
MMP_RS07115 +0.7 4.7 MBL fold metallo-hydrolase compare
MMP_RS03440 +0.7 1.5 MoaD/ThiS family protein compare
MMP_RS08315 +0.6 1.4 S-methyl-5-thioribose-1-phosphate isomerase compare
MMP_RS06545 +0.6 3.5 ferredoxin family protein compare
MMP_RS06555 +0.6 2.7 cupin domain-containing protein compare
MMP_RS08350 +0.6 1.1 hypothetical protein compare
MMP_RS03320 +0.6 1.9 metal-dependent transcriptional regulator compare
MMP_RS01525 +0.5 1.8 nucleoside-diphosphate kinase compare
MMP_RS08275 +0.5 4.4 hypothetical protein compare
MMP_RS01775 +0.5 1.6 TIGR00297 family protein compare
MMP_RS04480 +0.5 4.5 lysine 2 3-aminomutase compare
MMP_RS07415 +0.5 3.1 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
MMP_RS06575 +0.5 2.7 fluoride efflux transporter CrcB compare
MMP_RS05700 +0.4 3.0 TfuA-related McrA-glycine thioamidation protein compare
MMP_RS01420 +0.4 1.8 hypothetical protein compare
MMP_RS07890 +0.4 1.4 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS08360 +0.4 2.2 hypothetical protein compare
MMP_RS02310 +0.4 1.3 RimK-like ATPgrasp N-terminal domain-containing protein compare
MMP_RS04520 +0.4 2.5 nucleoside deaminase compare
MMP_RS00915 +0.4 2.6 DUF116 domain-containing protein compare
MMP_RS07125 +0.4 2.1 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS00080 +0.4 1.7 RecB-family nuclease compare
MMP_RS07620 +0.4 2.6 energy-coupling factor ABC transporter substrate-binding protein compare
MMP_RS07805 +0.4 2.6 ABC transporter permease compare
MMP_RS08285 +0.4 2.9 serine/threonine protein kinase compare
MMP_RS02475 +0.4 1.5 hypothetical protein compare
MMP_RS08310 +0.4 1.4 TMEM165/GDT1 family protein compare
MMP_RS02495 +0.4 1.7 hypothetical protein compare
MMP_RS07820 +0.4 1.7 UPF0104 family protein compare
MMP_RS01650 +0.4 0.8 sulfurtransferase TusA family protein compare
MMP_RS02290 +0.4 3.0 MBL fold metallo-hydrolase compare
MMP_RS02790 +0.4 0.8 class III signal peptide-containing protein compare
MMP_RS06435 +0.4 2.6 CBS domain-containing protein compare
MMP_RS00660 +0.4 2.7 alkaline phosphatase family protein compare
MMP_RS08455 +0.3 1.8 multiprotein bridging factor aMBF1 compare
MMP_RS01540 +0.3 1.4 DUF504 domain-containing protein compare
MMP_RS01435 +0.3 1.8 DMT family transporter compare
MMP_RS05695 +0.3 2.6 phospholipase D-like domain-containing protein compare
MMP_RS07615 +0.3 1.9 energy-coupling factor ABC transporter permease compare
MMP_RS01470 +0.3 1.5 ATP-binding cassette domain-containing protein compare
MMP_RS02295 +0.3 2.7 TatD family hydrolase compare
MMP_RS01155 +0.3 2.6 XRE family transcriptional regulator compare
MMP_RS08365 +0.3 1.5 energy conserving hydrogenase EhbF compare
MMP_RS00140 +0.3 2.3 DUF192 domain-containing protein compare
MMP_RS03235 +0.3 1.9 tRNA pseudouridine(13) synthase TruD compare
MMP_RS07725 +0.3 1.3 4Fe-4S dicluster domain-containing protein compare
MMP_RS06535 +0.3 2.1 2-oxoacid:acceptor oxidoreductase family protein compare
MMP_RS03465 +0.3 0.7 adenine phosphoribosyltransferase compare
MMP_RS08620 +0.3 1.9 flagellar accessory protein FlaH compare
MMP_RS06765 +0.3 2.1 flap endonuclease-1 compare
MMP_RS01570 +0.3 0.9 hypothetical protein compare
MMP_RS03150 +0.3 2.5 phosphoglycerate mutase compare
MMP_RS03800 +0.3 1.8 hypothetical protein compare
MMP_RS06520 +0.3 1.4 DUF1786 domain-containing protein compare
MMP_RS01965 +0.3 1.8 DUF1616 domain-containing protein compare
MMP_RS06550 +0.3 1.9 AMP-binding protein compare
MMP_RS00910 +0.3 2.0 2-phosphosulfolactate phosphatase compare
MMP_RS05460 +0.3 2.4 YcaO-related McrA-glycine thioamidation protein compare
MMP_RS06490 +0.3 1.7 hypothetical protein compare
MMP_RS06275 +0.3 2.2 ATP-dependent DNA helicase compare
MMP_RS02490 +0.3 1.5 hypothetical protein compare
MMP_RS05180 +0.3 2.4 Nre family DNA repair protein compare
MMP_RS06875 +0.3 1.8 FAD-dependent oxidoreductase compare
MMP_RS07815 +0.3 0.7 DUF2120 domain-containing protein compare
MMP_RS07120 +0.3 2.3 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS06965 +0.3 1.9 TIGR04014 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS02315 +0.3 1.5 RimK family alpha-L-glutamate ligase compare
MMP_RS06515 +0.3 1.3 UPF0489 family protein compare
MMP_RS00145 +0.3 1.9 ATP-dependent Clp protease proteolytic subunit compare
MMP_RS08235 +0.3 1.3 hypothetical protein compare
MMP_RS03890 +0.3 1.2 DUF2540 domain-containing protein compare
MMP_RS08775 +0.3 1.7 methanogenesis marker 9 domain-containing protein compare
MMP_RS00655 +0.3 0.9 hypothetical protein compare
MMP_RS08175 +0.3 1.7 7-cyano-7-deazaguanine synthase compare
MMP_RS02815 +0.3 0.9 hypothetical protein compare
MMP_RS02230 +0.3 1.5 sodium-dependent transporter compare
MMP_RS04485 +0.3 2.0 putative beta-lysine N-acetyltransferase compare
MMP_RS07925 +0.2 1.5 haloacid dehalogenase compare
MMP_RS08340 +0.2 1.0 4Fe-4S binding protein compare
MMP_RS09050 +0.2 1.3 CAP domain-containing protein compare
MMP_RS07850 +0.2 1.3 prephenate dehydratase compare
MMP_RS08580 +0.2 1.3 flagellin compare
MMP_RS02770 +0.2 1.3 hypothetical protein compare
MMP_RS01275 +0.2 1.4 class III signal peptide-containing protein compare
MMP_RS07095 +0.2 0.7 PspC domain-containing protein compare
MMP_RS00975 +0.2 1.9 HD domain-containing protein compare
MMP_RS05975 +0.2 0.7 hypothetical protein compare
MMP_RS05990 +0.2 1.2 DsrE family protein compare
MMP_RS01125 +0.2 1.6 thioredoxin family protein compare
MMP_RS01260 +0.2 1.2 HDIG domain-containing protein compare
MMP_RS02450 +0.2 1.8 hypothetical protein compare
MMP_RS06610 +0.2 1.1 DUF2334 domain-containing protein compare
MMP_RS04730 +0.2 1.8 flavodoxin family protein compare
MMP_RS04105 +0.2 1.1 MarR family transcriptional regulator compare
MMP_RS08860 +0.2 1.3 MinD/ParA family protein compare
MMP_RS00865 +0.2 1.5 SLC13 family permease compare
MMP_RS01580 +0.2 1.7 PQQ-binding-like beta-propeller repeat protein compare
MMP_RS00945 +0.2 0.5 PadR family transcriptional regulator compare
MMP_RS08485 +0.2 1.9 tungstate ABC transporter substrate-binding protein WtpA compare
MMP_RS00760 +0.2 1.6 branched-chain-amino-acid transaminase compare
MMP_RS00710 +0.2 0.8 hypothetical protein compare
MMP_RS01160 +0.2 1.7 DMT family transporter compare
MMP_RS00185 +0.2 1.9 potassium channel protein compare
MMP_RS05825 +0.2 1.3 peptidyl-prolyl cis-trans isomerase compare
MMP_RS07680 +0.2 1.2 DUF366 family protein compare
MMP_RS00240 +0.2 1.8 type II secretion system F family protein compare
MMP_RS01200 +0.2 1.3 hypothetical protein compare
MMP_RS00705 +0.2 0.6 hypothetical protein compare
MMP_RS05530 +0.2 1.5 signal peptide peptidase SppA compare
MMP_RS07910 +0.2 1.6 NAD(P)H-hydrate dehydratase compare
MMP_RS06155 +0.2 0.9 DUF4186 domain-containing protein compare
MMP_RS05785 +0.2 1.8 ATP-binding protein compare
MMP_RS06335 +0.2 1.2 HAD family hydrolase compare
MMP_RS07130 +0.2 1.7 coenzyme F420 hydrogenase subunit gamma compare
MMP_RS05110 +0.2 1.5 16S ribosomal RNA methyltransferase A compare
MMP_RS01785 +0.2 1.4 hypothetical protein compare
MMP_RS04530 +0.2 1.4 ABC transporter permease compare
MMP_RS01285 +0.2 1.5 hypothetical protein compare
MMP_RS07135 +0.2 1.5 coenzyme F420 hydrogenase subunit beta compare
MMP_RS04270 +0.2 1.1 coenzyme F420 hydrogenase subunit alpha compare
MMP_RS00285 +0.2 1.4 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMP_RS00435 +0.2 1.5 CPBP family intramembrane metalloprotease compare
MMP_RS06570 +0.2 0.7 DUF190 domain-containing protein compare
MMP_RS02810 +0.2 1.4 hypothetical protein compare
MMP_RS04800 +0.2 1.3 chemotaxis protein CheW compare
MMP_RS04015 +0.2 0.9 hypothetical protein compare
MMP_RS01685 +0.2 0.7 indolepyruvate oxidoreductase subunit beta compare
MMP_RS08940 +0.2 0.4 MetS family NSS transporter small subunit compare
MMP_RS08835 +0.2 1.5 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMP_RS02825 +0.2 1.4 mechanosensitive ion channel family protein compare
MMP_RS01270 +0.2 1.5 prepilin peptidase compare
MMP_RS03790 +0.2 1.2 hypothetical protein compare
MMP_RS06540 +0.2 0.7 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMP_RS03300 +0.2 0.3 TOBE domain-containing protein compare
MMP_RS02410 +0.2 0.9 ABC transporter substrate-binding protein compare
MMP_RS05665 +0.2 1.0 phosphate ABC transporter permease subunit PstC compare
MMP_RS06860 +0.2 0.5 4Fe-4S binding protein compare
MMP_RS02320 +0.2 1.1 glutamate-cysteine ligase family protein compare
MMP_RS01030 +0.2 1.1 MTAP family purine nucleoside phosphorylase compare
MMP_RS03395 +0.2 1.1 hypothetical protein compare
MMP_RS04880 +0.2 1.3 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS01105 +0.2 1.1 hypothetical protein compare
MMP_RS06480 +0.2 1.0 ABC transporter substrate-binding protein compare
MMP_RS04985 +0.2 0.9 DUF2180 family protein compare
MMP_RS06290 +0.2 0.8 DNA repair and recombination protein RadA compare
MMP_RS06560 +0.2 1.3 hypothetical protein compare
MMP_RS08855 +0.2 1.2 hypothetical protein compare
MMP_RS05455 +0.2 1.1 DUF167 domain-containing protein compare
MMP_RS00085 +0.2 1.2 DNA cytosine methyltransferase compare
MMP_RS08405 +0.2 1.3 MFS transporter compare
MMP_RS08355 +0.2 1.1 Na(+)/H(+) antiporter subunit B compare
MMP_RS08770 +0.2 1.1 hypothetical protein compare
MMP_RS02740 +0.2 0.7 hypothetical protein compare
MMP_RS06060 +0.2 1.0 hypothetical protein compare
MMP_RS00545 +0.2 0.9 XRE family transcriptional regulator compare
MMP_RS01460 +0.2 0.9 hypothetical protein compare
MMP_RS08945 +0.2 1.3 hypothetical protein compare
MMP_RS03350 +0.2 0.7 winged helix-turn-helix domain-containing protein compare
MMP_RS08500 +0.1 0.9 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMP_RS03860 +0.1 1.3 hypothetical protein compare
MMP_RS08535 +0.1 1.2 bis-aminopropyl spermidine synthase family protein compare
MMP_RS02000 +0.1 1.0 radical SAM protein compare
MMP_RS06445 +0.1 1.1 DUF89 domain-containing protein compare
MMP_RS01130 +0.1 1.0 flavoprotein compare
MMP_RS06440 +0.1 0.9 CBS domain-containing protein compare
MMP_RS07775 +0.1 1.0 alanine dehydrogenase compare
MMP_RS02845 +0.1 1.3 hypothetical protein compare
MMP_RS03725 +0.1 0.9 magnesium/cobalt transporter CorA compare
MMP_RS05660 +0.1 1.0 phosphate ABC transporter substrate-binding protein compare
MMP_RS05980 +0.1 1.2 ferritin compare
MMP_RS05435 +0.1 1.0 5'/3'-nucleotidase SurE compare
MMP_RS01620 +0.1 0.8 hypothetical protein compare
MMP_RS08000 +0.1 1.2 methyl coenzyme M reductase-arginine methyltransferase Mmp10 compare
MMP_RS04145 +0.1 0.4 hypothetical protein compare
MMP_RS02575 +0.1 1.0 CAAX prenyl protease Rce1 compare
MMP_RS02915 +0.1 0.7 amino acid ABC transporter permease compare
MMP_RS06905 +0.1 0.5 hypothetical protein compare
MMP_RS07855 +0.1 1.1 class I SAM-dependent methyltransferase compare
MMP_RS01635 +0.1 0.9 thiamine pyrophosphate-dependent enzyme compare
MMP_RS02085 +0.1 1.2 inosine/xanthosine triphosphatase compare
MMP_RS08630 +0.1 0.9 archaellar assembly protein FlaJ compare
MMP_RS08675 +0.1 0.6 class III signal peptide-containing protein compare
MMP_RS02405 +0.1 0.9 hypothetical protein compare
MMP_RS07100 +0.1 1.0 hypothetical protein compare
MMP_RS03670 +0.1 0.6 DUF1890 domain-containing protein compare
MMP_RS04980 +0.1 1.2 DUF2193 domain-containing protein compare
MMP_RS08345 +0.1 1.0 4Fe-4S binding protein compare
MMP_RS08555 +0.1 0.4 hypothetical protein compare
MMP_RS01290 +0.1 1.2 class III signal peptide-containing protein compare
MMP_RS01680 +0.1 1.1 phenylacetate--CoA ligase compare
MMP_RS08385 +0.1 0.9 ABC transporter substrate-binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms