Experiment set4IT053 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB, 0.4x - replicate 1

200 most important genes:

  gene name fitness t score description  
Xcc-8004.623.1 -4.2 -2.9 Phosphoserine phosphatase compare
Xcc-8004.271.1 -3.9 -3.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.1336.1 -3.4 -8.9 two-component system sensor protein compare
Xcc-8004.884.1 -3.2 -5.4 Rod shape-determining protein MreD compare
Xcc-8004.5192.1 -2.9 -11.7 hypothetical protein compare
Xcc-8004.907.1 -2.8 -15.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Xcc-8004.5193.1 -2.8 -16.1 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.4286.1 -2.6 -8.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.1891.1 -2.5 -2.8 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.3346.1 -2.5 -2.4 hypothetical protein compare
Xcc-8004.495.1 -2.5 -7.2 EpiH/GdmH-related protein compare
Xcc-8004.1763.1 -2.4 -3.9 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.3728.1 -2.4 -2.6 hypothetical protein compare
Xcc-8004.1241.1 -2.2 -5.2 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.4951.1 -2.1 -2.4 FIG01210986: hypothetical protein compare
Xcc-8004.1871.1 -2.0 -3.6 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.4441.1 -2.0 -4.2 Tyrosine recombinase XerD compare
Xcc-8004.1654.1 -2.0 -2.6 Mg/Co/Ni transporter MgtE / CBS domain compare
Xcc-8004.3433.1 -2.0 -6.0 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.2217.1 -2.0 -3.4 FIG01209779: hypothetical protein compare
Xcc-8004.1236.1 -1.9 -5.5 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.4457.1 -1.9 -5.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Xcc-8004.1282.1 -1.9 -4.9 sulfur deprivation response regulator compare
Xcc-8004.29.1 -1.9 -6.7 Cell wall endopeptidase, family M23/M37 compare
Xcc-8004.589.1 -1.8 -2.6 hypothetical protein compare
Xcc-8004.4616.1 -1.8 -8.2 Sensor histidine kinase compare
Xcc-8004.4620.1 -1.7 -7.1 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.1108.1 -1.7 -2.8 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Xcc-8004.3612.1 -1.7 -1.6 Putative translation initiation inhibitor, yjgF family compare
Xcc-8004.4112.1 -1.6 -3.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2110.1 -1.6 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3442.1 -1.5 -2.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2346.1 -1.5 -2.1 ABC transporter involved in cytochrome c biogenesis, CcmB subunit compare
Xcc-8004.5363.1 -1.5 -2.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.4877.1 -1.4 -12.3 Membrane proteins related to metalloendopeptidases compare
Xcc-8004.2335.1 -1.4 -5.2 Transport ATP-binding protein CydC compare
Xcc-8004.1511.1 -1.4 -2.9 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.2387.1 -1.4 -2.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.270.1 -1.4 -5.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.1727.1 -1.4 -2.0 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.3642.1 -1.4 -1.5 FIG01211227: hypothetical protein compare
Xcc-8004.4844.1 -1.4 -1.3 FIG01210764: hypothetical protein compare
Xcc-8004.1615.1 -1.3 -2.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1409.1 -1.3 -2.3 Cation:proton antiporter compare
Xcc-8004.2334.1 -1.3 -4.9 Transport ATP-binding protein CydD compare
Xcc-8004.2372.1 -1.2 -4.5 Pheromone shutdown protein compare
Xcc-8004.234.1 -1.1 -6.7 cardiolipin synthase compare
Xcc-8004.2922.1 -1.1 -2.0 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.236.1 -1.1 -1.9 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Xcc-8004.1660.1 -1.1 -1.2 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.5367.1 -1.1 -4.3 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.4732.1 -1.1 -1.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.1657.1 -1.1 -2.4 PTS system, mannose-specific IIA component compare
Xcc-8004.3863.1 -1.1 -3.4 Septum site-determining protein MinD compare
Xcc-8004.4275.1 -1.1 -4.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Xcc-8004.3653.1 -1.1 -1.7 FIG01212122: hypothetical protein compare
Xcc-8004.1147.1 -1.1 -4.1 Xaa-Pro aminopeptidase (EC 3.4.11.9) compare
Xcc-8004.4775.1 -1.0 -4.6 Cell division protein FtsX compare
Xcc-8004.2867.1 -1.0 -1.2 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.456.1 -1.0 -1.7 carbonic anhydrase, family 3 compare
Xcc-8004.5098.1 -1.0 -2.0 hypothetical protein compare
Xcc-8004.543.1 -1.0 -2.6 FIG01210004: hypothetical protein compare
Xcc-8004.3310.1 -1.0 -3.2 Chromosome partition protein smc compare
Xcc-8004.4013.1 -1.0 -2.1 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.3726.1 -1.0 -1.4 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.1434.1 -1.0 -1.5 FIG000859: hypothetical protein YebC compare
Xcc-8004.2215.1 -1.0 -1.2 hypothetical protein compare
Xcc-8004.914.1 -0.9 -4.6 tail-specific protease compare
Xcc-8004.1229.1 -0.9 -2.6 hypothetical protein compare
Xcc-8004.3875.1 -0.9 -1.3 FIG01212144: hypothetical protein compare
Xcc-8004.4039.1 -0.9 -1.9 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.5018.1 -0.9 -2.9 FIG01210512: hypothetical protein compare
Xcc-8004.4824.1 -0.9 -5.6 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.4210.1 -0.9 -3.2 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.2921.1 -0.9 -1.9 ferrous iron transport protein compare
Xcc-8004.4092.1 -0.9 -5.3 FIG01209901: hypothetical protein compare
Xcc-8004.2385.1 -0.9 -4.8 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.1436.1 -0.9 -1.1 Holliday junction DNA helicase RuvA compare
Xcc-8004.3339.1 -0.9 -3.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.3862.1 -0.9 -3.2 Septum site-determining protein MinC compare
Xcc-8004.3536.1 -0.9 -3.0 FIG01210913: hypothetical protein compare
Xcc-8004.4521.1 -0.9 -4.0 outer membrane protein compare
Xcc-8004.3108.1 -0.9 -1.9 Regulatory protein RecX compare
Xcc-8004.1362.1 -0.8 -2.3 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.2333.1 -0.8 -4.7 Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.5369.1 -0.8 -3.3 Lipoprotein compare
Xcc-8004.4200.1 -0.8 -1.4 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.3049.1 -0.8 -4.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.932.1 -0.8 -3.4 histidine kinase/response regulator hybrid protein compare
Xcc-8004.5407.1 -0.8 -1.8 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.5205.1 -0.8 -2.6 FIG01210461: hypothetical protein compare
Xcc-8004.2839.1 -0.8 -1.5 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.4902.1 -0.8 -2.4 FIG01211036: hypothetical protein compare
Xcc-8004.3171.1 -0.8 -2.7 FIG01213081: hypothetical protein compare
Xcc-8004.2358.1 -0.8 -4.2 Segregation and condensation protein A compare
Xcc-8004.1904.1 -0.8 -1.7 two-component system regulatory protein compare
Xcc-8004.805.1 -0.8 -1.8 Zinc transport protein ZntB compare
Xcc-8004.930.1 -0.8 -4.0 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) compare
Xcc-8004.1677.1 -0.8 -2.5 FIG01209993: hypothetical protein compare
Xcc-8004.2563.1 -0.8 -1.3 FIG01210540: hypothetical protein compare
Xcc-8004.3266.1 -0.8 -2.1 FIG01213768: hypothetical protein compare
Xcc-8004.1164.1 -0.8 -1.7 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.5326.1 -0.8 -1.3 Mobile element protein compare
Xcc-8004.3395.1 -0.8 -1.6 Transcriptional regulator, GntR family compare
Xcc-8004.1027.1 -0.8 -1.0 Two-component system sensor protein compare
Xcc-8004.2449.1 -0.8 -3.0 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.5365.1 -0.8 -3.2 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.4738.1 -0.8 -4.7 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.2386.1 -0.8 -5.3 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.3483.1 -0.8 -3.8 Outer membrane protein A precursor compare
Xcc-8004.312.1 -0.8 -3.4 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Xcc-8004.3861.1 -0.8 -3.5 FIG01210504: hypothetical protein compare
Xcc-8004.2831.1 -0.8 -3.3 Flagellar synthesis regulator FleN compare
Xcc-8004.5168.1 -0.7 -0.8 hypothetical protein compare
Xcc-8004.574.1 -0.7 -3.5 Di-/tripeptide transporter compare
Xcc-8004.2131.1 -0.7 -1.4 Predicted 4-hydroxyproline dipeptidase compare
Xcc-8004.1890.1 -0.7 -3.1 hypothetical protein compare
Xcc-8004.1755.1 -0.7 -2.6 COG2879, Hypothetical small protein yjiX compare
Xcc-8004.5352.1 -0.7 -1.5 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.3794.1 -0.7 -1.3 Mobile element protein compare
Xcc-8004.4737.1 -0.7 -2.6 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.5328.1 -0.7 -2.0 Mobile element protein compare
Xcc-8004.3954.1 -0.7 -2.6 HflC protein compare
Xcc-8004.4596.1 -0.7 -4.1 hypothetical protein compare
Xcc-8004.279.1 -0.7 -1.9 FIG01210420: hypothetical protein compare
Xcc-8004.4467.1 -0.7 -2.5 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Xcc-8004.3230.1 -0.7 -1.7 Phage DNA invertase compare
Xcc-8004.5087.1 -0.7 -1.7 FIG027190: Putative transmembrane protein compare
Xcc-8004.3981.1 -0.7 -2.8 Methylisocitrate lyase (EC 4.1.3.30) compare
Xcc-8004.4768.1 -0.7 -1.5 FIG01210642: hypothetical protein compare
Xcc-8004.399.1 -0.7 -1.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Xcc-8004.2911.1 -0.7 -1.2 Transcription elongation factor GreA compare
Xcc-8004.4181.1 -0.7 -0.9 Molybdenum cofactor biosynthesis protein MoaB compare
Xcc-8004.1007.1 -0.7 -1.2 acetylxylan esterase compare
Xcc-8004.5224.1 -0.7 -1.2 bleomycin resistance protein compare
Xcc-8004.2212.1 -0.7 -2.2 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Xcc-8004.2128.1 -0.7 -2.9 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare
Xcc-8004.694.1 -0.7 -2.0 hypothetical protein compare
Xcc-8004.4235.1 -0.7 -2.5 hypothetical protein compare
Xcc-8004.4805.1 -0.7 -2.5 FIG01211119: hypothetical protein compare
Xcc-8004.3208.1 -0.6 -0.7 Methyltransferase type 12 compare
Xcc-8004.3699.1 -0.6 -1.4 hypothetical protein compare
Xcc-8004.2079.1 -0.6 -1.5 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.3792.1 -0.6 -0.8 Mobile element protein compare
Xcc-8004.3329.1 -0.6 -2.1 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Xcc-8004.5366.1 -0.6 -4.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.4522.1 -0.6 -3.9 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.1401.1 -0.6 -2.0 hypothetical protein compare
Xcc-8004.1696.1 -0.6 -1.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1931.1 -0.6 -1.7 FIG01209787: hypothetical protein compare
Xcc-8004.4759.1 -0.6 -4.9 protease IV compare
Xcc-8004.3201.1 -0.6 -1.5 hypothetical protein compare
Xcc-8004.1920.1 -0.6 -4.4 Metallopeptidase compare
Xcc-8004.937.1 -0.6 -2.9 Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2) compare
Xcc-8004.4821.1 -0.6 -1.9 FIG01209726: hypothetical protein compare
Xcc-8004.1909.1 -0.6 -2.3 FIG01212339: hypothetical protein compare
Xcc-8004.1770.1 -0.6 -2.1 hypothetical protein compare
Xcc-8004.2168.1 -0.6 -1.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.2274.1 -0.6 -2.4 ATP-dependent 23S rRNA helicase DbpA compare
Xcc-8004.438.1 -0.6 -2.3 hypothetical protein compare
Xcc-8004.2074.1 -0.6 -2.1 Transcriptional regulator, MerR family compare
Xcc-8004.742.1 -0.6 -1.9 Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) compare
Xcc-8004.4710.1 -0.6 -2.0 FIG01211889: hypothetical protein compare
Xcc-8004.3663.1 -0.6 -1.7 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Xcc-8004.5135.1 -0.6 -2.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Xcc-8004.2317.1 -0.6 -1.6 OsmC/Ohr family protein compare
Xcc-8004.1811.1 -0.6 -1.6 extracellular serine protease compare
Xcc-8004.2332.1 -0.6 -2.8 Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.4879.1 -0.6 -1.5 FIG01209773: hypothetical protein compare
Xcc-8004.2356.1 -0.6 -2.0 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.4671.1 -0.6 -1.6 FIG01212254: hypothetical protein compare
Xcc-8004.3757.1 -0.6 -1.4 Mobile element protein compare
Xcc-8004.3054.1 -0.6 -0.8 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3119.1 -0.6 -1.7 GTP-binding protein HflX compare
Xcc-8004.2081.1 -0.6 -1.7 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.488.1 -0.6 -3.3 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Xcc-8004.1950.1 -0.6 -1.6 FIG01210891: hypothetical protein compare
Xcc-8004.364.1 -0.6 -1.4 hypothetical protein compare
Xcc-8004.1264.1 -0.6 -1.9 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1448.1 -0.6 -3.3 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Xcc-8004.4455.1 -0.6 -1.8 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Xcc-8004.3304.1 -0.6 -1.0 FIG01211108: hypothetical protein compare
Xcc-8004.850.1 -0.6 -2.3 ATP-dependent protease HslV (EC 3.4.25.-) compare
Xcc-8004.812.1 -0.6 -1.7 histidine kinase-response regulator hybrid protein compare
Xcc-8004.4431.1 -0.6 -2.1 General secretion pathway protein F compare
Xcc-8004.968.1 -0.6 -3.5 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.3324.1 -0.6 -2.2 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.2754.1 -0.6 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.3402.1 -0.6 -1.2 FIG01210246: hypothetical protein compare
Xcc-8004.4465.1 -0.5 -2.0 ABC transporter ATP-binding protein USSDB6B compare
Xcc-8004.1879.1 -0.5 -2.6 Septum formation protein Maf compare
Xcc-8004.5100.1 -0.5 -1.2 FIG01211066: hypothetical protein compare
Xcc-8004.2561.1 -0.5 -3.1 FIG01213638: hypothetical protein compare
Xcc-8004.108.1 -0.5 -1.7 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Xcc-8004.385.1 -0.5 -1.4 FIG01212287: hypothetical protein compare
Xcc-8004.2450.1 -0.5 -4.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.1118.1 -0.5 -1.1 hypothetical protein compare
Xcc-8004.5343.1 -0.5 -2.4 hypothetical protein compare
Xcc-8004.4497.1 -0.5 -1.4 Mobile element protein compare
Xcc-8004.288.1 -0.5 -0.6 Ferredoxin compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB in Xanthomonas campestris pv. campestris strain 8004

For supernatant Supernatant; Xanthomonas campestris pv. campestris (strain 8004) grown in 0.1x TSB across organisms