Experiment set4IT042 for Methanococcus maripaludis JJ

Compare to:

control, 1x iron with casamino acids and vitamins, formate media

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04415 +1.8 6.5 hypothetical protein compare
MMJJ_RS04005 +0.7 5.7 acetate--CoA ligase family protein compare
MMJJ_RS07935 +0.7 1.5 protein fwdD compare
MMJJ_RS06210 +0.7 4.4 hypothetical protein compare
MMJJ_RS07240 +0.7 6.3 MBL fold metallo-hydrolase compare
MMJJ_RS05685 +0.7 4.7 class III signal peptide-containing protein compare
MMJJ_RS06680 +0.6 3.7 DUF366 family protein compare
MMJJ_RS08830 +0.6 3.9 hypothetical protein compare
MMJJ_RS04545 +0.6 3.1 PadR family transcriptional regulator compare
MMJJ_RS04955 +0.6 3.8 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS03725 +0.6 2.1 sulfurtransferase TusA family protein compare
MMJJ_RS08130 +0.6 0.7 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS07225 +0.5 3.7 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS06085 +0.5 3.0 proteasome assembly chaperone family protein compare
MMJJ_RS07040 +0.5 0.7 preprotein translocase subunit SecY compare
MMJJ_RS07235 +0.5 4.3 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS07915 +0.5 2.9 CBS domain-containing protein compare
MMJJ_RS01855 +0.5 3.9 MBL fold metallo-hydrolase compare
MMJJ_RS06665 +0.5 3.0 DUF3236 domain-containing protein compare
MMJJ_RS01785 +0.5 0.8 50S ribosomal protein L14e compare
MMJJ_RS04105 +0.5 4.0 prepilin peptidase compare
MMJJ_RS07005 +0.5 2.8 transcription factor S compare
MMJJ_RS07920 +0.4 3.1 6-carboxytetrahydropterin synthase QueD compare
MMJJ_RS02270 +0.4 1.8 HEPN domain-containing protein compare
MMJJ_RS01140 +0.4 1.7 helix-turn-helix domain-containing protein compare
MMJJ_RS06500 +0.4 2.8 class I SAM-dependent methyltransferase compare
MMJJ_RS07185 +0.4 1.4 DUF371 domain-containing protein compare
MMJJ_RS08225 +0.4 1.6 peptidylprolyl isomerase compare
MMJJ_RS08455 +0.4 2.4 tetratricopeptide repeat protein compare
MMJJ_RS07260 +0.4 2.7 PspC domain-containing protein compare
MMJJ_RS06950 +0.4 3.1 4-demethylwyosine synthase TYW1 compare
MMJJ_RS07220 +0.4 3.1 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS06740 +0.4 2.2 energy-coupling factor ABC transporter substrate-binding protein compare
MMJJ_RS06540 +0.4 1.1 DUF2120 domain-containing protein compare
MMJJ_RS06190 +0.4 2.9 7-cyano-7-deazaguanine synthase compare
MMJJ_RS06460 +0.4 2.1 cytochrome c compare
MMJJ_RS02180 +0.4 1.9 DHH family phosphoesterase compare
MMJJ_RS01010 +0.4 3.4 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS01670 +0.4 2.1 hypothetical protein compare
MMJJ_RS06440 +0.4 2.5 DUF4870 domain-containing protein compare
MMJJ_RS06275 +0.3 1.3 hypothetical protein compare
MMJJ_RS08100 +0.3 2.1 hypothetical protein compare
MMJJ_RS03070 +0.3 1.3 MetS family NSS transporter small subunit compare
MMJJ_RS04215 +0.3 2.9 DMT family transporter compare
MMJJ_RS05410 +0.3 2.1 RecB-family nuclease compare
MMJJ_RS07210 +0.3 2.7 AmmeMemoRadiSam system protein B compare
MMJJ_RS08935 +0.3 0.6 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS06770 +0.3 2.8 hypothetical protein compare
MMJJ_RS00115 +0.3 1.6 hypothetical protein compare
MMJJ_RS06090 +0.3 2.2 hypothetical protein compare
MMJJ_RS00745 +0.3 1.6 hypothetical protein compare
MMJJ_RS07610 +0.3 1.9 DUF2119 domain-containing protein compare
MMJJ_RS03850 +0.3 1.5 nucleoside-diphosphate kinase compare
MMJJ_RS03285 +0.3 1.3 gamma-glutamylcyclotransferase compare
MMJJ_RS02285 +0.3 0.9 class III signal peptide-containing protein compare
MMJJ_RS05660 +0.3 2.2 sulfopyruvate decarboxylase subunit beta compare
MMJJ_RS09230 +0.3 1.8 hypothetical protein compare
MMJJ_RS07750 +0.3 0.8 class III signal peptide-containing protein compare
MMJJ_RS06515 +0.3 2.4 ribonuclease III compare
MMJJ_RS08305 +0.3 1.7 peroxiredoxin compare
MMJJ_RS06685 +0.3 2.6 S-layer protein compare
MMJJ_RS06205 +0.3 2.2 EamA family transporter compare
MMJJ_RS03040 +0.3 2.1 lactate utilization protein compare
MMJJ_RS06675 +0.3 2.2 TIGR01212 family radical SAM protein compare
MMJJ_RS03805 +0.3 1.0 hypothetical protein compare
MMJJ_RS09360 +0.3 2.1 hypothetical protein compare
MMJJ_RS07445 +0.3 2.0 RlmF-related methyltransferase compare
MMJJ_RS00150 +0.3 1.7 DUF2180 family protein compare
MMJJ_RS07230 +0.3 2.0 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS06735 +0.3 2.1 cobalt ECF transporter T component CbiQ compare
MMJJ_RS07450 +0.3 1.9 hypothetical protein compare
MMJJ_RS09065 +0.3 1.8 hypothetical protein compare
MMJJ_RS07025 +0.3 1.7 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS06810 +0.3 2.2 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS00630 +0.3 1.7 betaine/proline/choline family ABC transporter ATP-binding protein compare
MMJJ_RS06790 +0.3 2.2 nucleotidyltransferase family protein compare
MMJJ_RS06470 +0.3 2.1 tripartite tricarboxylate transporter permease compare
MMJJ_RS06505 +0.3 1.5 prephenate dehydratase compare
MMJJ_RS08675 +0.3 1.5 phosphate ABC transporter ATP-binding protein PstB compare
MMJJ_RS00405 +0.3 1.4 flavodoxin family protein compare
MMJJ_RS07825 +0.3 1.4 YciI family protein compare
MMJJ_RS06535 +0.3 2.2 UPF0104 family protein compare
MMJJ_RS06120 +0.3 1.9 DUF4013 domain-containing protein compare
MMJJ_RS00785 +0.3 0.5 hypothetical protein compare
MMJJ_RS08160 +0.3 1.3 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO compare
MMJJ_RS05510 +0.3 2.0 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS07205 +0.3 1.1 MTH895/ArsE family thioredoxin-like protein compare
MMJJ_RS05700 +0.3 1.9 metallophosphoesterase compare
MMJJ_RS04345 +0.2 0.8 DUF2080 family transposase-associated protein compare
MMJJ_RS07890 +0.2 1.5 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS06710 +0.2 2.0 TldD/PmbA family protein compare
MMJJ_RS03775 +0.2 1.0 50S ribosomal protein L15e compare
MMJJ_RS03835 +0.2 1.2 DUF504 domain-containing protein compare
MMJJ_RS06960 +0.2 2.2 CAP domain-containing protein compare
MMJJ_RS05500 +0.2 2.2 hypothetical protein compare
MMJJ_RS01055 +0.2 0.7 hypothetical protein compare
MMJJ_RS08350 +0.2 2.1 heavy metal translocating P-type ATPase compare
MMJJ_RS06105 +0.2 1.8 DUF99 family protein compare
MMJJ_RS05525 +0.2 1.5 GTP-binding protein compare
MMJJ_RS01825 +0.2 1.1 DNA repair and recombination protein RadB compare
MMJJ_RS06745 +0.2 1.3 energy-coupling factor ABC transporter permease compare
MMJJ_RS05605 +0.2 0.9 hypothetical protein compare
MMJJ_RS06800 +0.2 1.5 prefoldin subunit alpha compare
MMJJ_RS04510 +0.2 1.9 hypothetical protein compare
MMJJ_RS06880 +0.2 0.2 EhaG family protein compare
MMJJ_RS03395 +0.2 0.8 hypothetical protein compare
MMJJ_RS04375 +0.2 1.2 hypothetical protein compare
MMJJ_RS08345 +0.2 1.6 flavodoxin family protein compare
MMJJ_RS00730 +0.2 1.4 peptide-methionine (S)-S-oxide reductase MsrA compare
MMJJ_RS03515 +0.2 1.3 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS05960 +0.2 1.5 DUF169 domain-containing protein compare
MMJJ_RS01395 +0.2 1.2 DUF1894 domain-containing protein compare
MMJJ_RS05690 +0.2 2.0 hypothetical protein compare
MMJJ_RS05040 +0.2 1.7 7-carboxy-7-deazaguanine synthase QueE compare
MMJJ_RS06465 +0.2 1.4 hypothetical protein compare
MMJJ_RS07760 +0.2 1.2 GNAT family N-acetyltransferase compare
MMJJ_RS08165 +0.2 1.2 thermonuclease family protein compare
MMJJ_RS02115 +0.2 1.5 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS02230 +0.2 1.7 hypothetical protein compare
MMJJ_RS03445 +0.2 1.1 hypothetical protein compare
MMJJ_RS03375 +0.2 1.1 hypothetical protein compare
MMJJ_RS06455 +0.2 1.6 YeeE/YedE family protein compare
MMJJ_RS07985 +0.2 1.1 hypothetical protein compare
MMJJ_RS01955 +0.2 1.7 hypothetical protein compare
MMJJ_RS01790 +0.2 1.3 pyridoxamine 5'-phosphate oxidase family protein compare
MMJJ_RS08045 +0.2 1.7 transporter substrate-binding domain-containing protein compare
MMJJ_RS06580 +0.2 1.5 alanine dehydrogenase compare
MMJJ_RS07365 +0.2 1.5 CatB-related O-acetyltransferase compare
MMJJ_RS06585 +0.2 1.2 alanine racemase compare
MMJJ_RS07810 +0.2 1.3 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS03610 +0.2 1.1 HIT family protein compare
MMJJ_RS06045 +0.2 1.3 hypothetical protein compare
MMJJ_RS03025 +0.2 1.6 Ig-like domain-containing protein compare
MMJJ_RS06235 +0.2 1.6 IGHMBP2 family helicase compare
MMJJ_RS08735 +0.2 1.6 hypothetical protein compare
MMJJ_RS03905 +0.2 0.8 ATP-binding cassette domain-containing protein compare
MMJJ_RS03510 +0.2 1.3 acyl-CoA dehydratase activase compare
MMJJ_RS00155 +0.2 1.5 DUF2193 domain-containing protein compare
MMJJ_RS05400 +0.2 0.8 CoA-binding protein compare
MMJJ_RS04550 +0.2 1.5 ATP-binding cassette domain-containing protein compare
MMJJ_RS00145 +0.2 1.4 aquaporin family protein compare
MMJJ_RS07805 +0.2 1.1 ferredoxin family protein compare
MMJJ_RS06280 +0.2 1.3 hypothetical protein compare
MMJJ_RS01795 +0.2 1.1 TIGR00266 family protein compare
MMJJ_RS02340 +0.2 1.1 SAM-dependent methyltransferase compare
MMJJ_RS01065 +0.2 1.2 DUF1700 domain-containing protein compare
MMJJ_RS05885 +0.2 1.5 tungstate ABC transporter substrate-binding protein WtpA compare
MMJJ_RS04915 +0.2 1.4 protein-L-isoaspartate O-methyltransferase compare
MMJJ_RS05965 +0.2 1.5 MFS transporter compare
MMJJ_RS02160 +0.2 1.3 amino acid ABC transporter permease compare
MMJJ_RS01210 +0.2 0.5 hypothetical protein compare
MMJJ_RS07215 +0.2 1.5 TIGR00341 family protein compare
MMJJ_RS07280 +0.2 1.1 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS06640 +0.2 1.2 YfcE family phosphodiesterase compare
MMJJ_RS06445 +0.2 1.5 hypothetical protein compare
MMJJ_RS05235 +0.2 1.5 Flp pilus assembly complex ATPase component TadA compare
MMJJ_RS02295 +0.2 1.5 hypothetical protein compare
MMJJ_RS07800 +0.2 1.4 AMP-binding protein compare
MMJJ_RS07255 +0.2 1.4 hypothetical protein compare
MMJJ_RS05975 +0.2 1.1 sulfurtransferase TusA family protein compare
MMJJ_RS01385 +0.2 1.2 PadR family transcriptional regulator compare
MMJJ_RS08515 +0.2 0.8 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMJJ_RS05085 +0.2 1.2 hypothetical protein compare
MMJJ_RS02665 +0.2 0.4 methyl-accepting chemotaxis protein compare
MMJJ_RS03575 +0.2 1.0 NUDIX hydrolase compare
MMJJ_RS06100 +0.2 1.0 rubrerythrin compare
MMJJ_RS05245 +0.2 1.2 type II secretion system F family protein compare
MMJJ_RS04610 +0.2 0.8 ribosome assembly RNA-binding protein YhbY compare
MMJJ_RS06385 +0.2 0.8 hypothetical protein compare
MMJJ_RS08525 +0.2 1.0 peptidylprolyl isomerase compare
MMJJ_RS07815 +0.2 1.1 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS07855 +0.2 1.1 YkgJ family cysteine cluster protein compare
MMJJ_RS01835 +0.2 1.1 tRNA pseudouridine(13) synthase TruD compare
MMJJ_RS03450 +0.2 0.8 hypothetical protein compare
MMJJ_RS04625 +0.2 1.1 SLC13 family permease compare
MMJJ_RS05200 +0.1 1.2 TIGR04013 family B12-binding domain/radical SAM domain-containing protein compare
MMJJ_RS00640 +0.1 1.2 glycine betaine ABC transporter substrate-binding protein compare
MMJJ_RS08275 +0.1 1.4 iron ABC transporter substrate-binding protein compare
MMJJ_RS05405 +0.1 1.1 DNA cytosine methyltransferase compare
MMJJ_RS05505 +0.1 1.4 hypothetical protein compare
MMJJ_RS07740 +0.1 1.0 DUF2334 domain-containing protein compare
MMJJ_RS05580 +0.1 1.1 methanogenesis marker 9 domain-containing protein compare
MMJJ_RS03250 +0.1 0.4 DUF2116 family Zn-ribbon domain-containing protein compare
MMJJ_RS00845 +0.1 1.0 hypothetical protein compare
MMJJ_RS05335 +0.1 0.8 heavy metal-binding domain-containing protein compare
MMJJ_RS06080 +0.1 1.1 serine/threonine protein kinase compare
MMJJ_RS05520 +0.1 1.1 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMJJ_RS04850 +0.1 0.9 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS02060 +0.1 1.0 cupin domain-containing protein compare
MMJJ_RS04830 +0.1 1.0 zinc dependent phospholipase C family protein compare
MMJJ_RS05895 +0.1 1.2 ABC transporter permease compare
MMJJ_RS02065 +0.1 1.2 S-layer protein compare
MMJJ_RS05100 +0.1 0.8 P-II family nitrogen regulator compare
MMJJ_RS05390 +0.1 1.1 tRNA pseudouridine(13) synthase TruD compare
MMJJ_RS05835 +0.1 1.1 bis-aminopropyl spermidine synthase family protein compare
MMJJ_RS02165 +0.1 0.8 ABC transporter substrate-binding protein compare
MMJJ_RS03595 +0.1 0.8 hypothetical protein compare
MMJJ_RS05900 +0.1 1.1 ATP-binding cassette domain-containing protein compare
MMJJ_RS02355 +0.1 1.0 DUF2798 domain-containing protein compare
MMJJ_RS02155 +0.1 1.0 DMT family transporter compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in iron experiments

For iron Iron (II) chloride tetrahydrate across organisms