Experiment set4IT032 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_0296 +3.3 5.4 heat shock protein Hsp20 (RefSeq) compare
Shew_2049 +3.2 18.1 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_1301 +2.9 25.2 phosphoribosylformylglycinamidine synthase (RefSeq) compare
Shew_2572 +2.6 11.8 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_0755 +2.5 13.7 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_1512 +2.4 11.7 phosphoribosylglycinamide formyltransferase (RefSeq) compare
Shew_1224 +2.4 20.0 sodium:dicarboxylate symporter (RefSeq) compare
Shew_2302 +2.4 17.3 amidophosphoribosyltransferase (RefSeq) compare
Shew_1819 +2.4 8.9 GntR family transcriptional regulator (RefSeq) compare
Shew_3413 +2.4 14.8 phosphoribosylamine--glycine ligase (RefSeq) compare
Shew_1128 +2.3 11.0 LysR family transcriptional regulator (RefSeq) compare
Shew_3488 +2.2 6.5 ribonuclease PH (RefSeq) compare
Shew_3412 purH +2.1 17.4 bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (RefSeq) compare
Shew_1298 guaA +2.0 16.4 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_2410 +2.0 1.8 beta-ketoacyl synthase (RefSeq) compare
Shew_1013 +2.0 14.7 aspartate carbamoyltransferase (RefSeq) compare
Shew_1227 +2.0 4.6 glutamate--cysteine ligase (RefSeq) compare
Shew_1425 +1.9 11.6 adenylyl-sulfate kinase (RefSeq) compare
Shew_3708 +1.9 11.4 TetR family transcriptional regulator (RefSeq) compare
Shew_2382 +1.9 12.9 cysteine synthase A (RefSeq) compare
Shew_1186 +1.9 3.6 transcriptional regulator NrdR (RefSeq) compare
Shew_3378 +1.9 4.2 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_3377 +1.8 2.3 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_3560 +1.8 11.7 signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) compare
Shew_2000 +1.8 4.5 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_3710 tdh +1.8 15.5 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_0777 +1.8 2.4 two-component response regulator (RefSeq) compare
Shew_1341 +1.7 5.5 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_0763 +1.7 7.2 putative PAS/PAC sensor protein (RefSeq) compare
Shew_3487 pyrE +1.7 7.8 orotate phosphoribosyltransferase (RefSeq) compare
Shew_3311 +1.6 8.5 RNA polymerase factor sigma-54 (RefSeq) compare
Shew_3273 +1.6 7.0 hypothetical protein (RefSeq) compare
Shew_1809 +1.6 13.9 NAD-glutamate dehydrogenase (RefSeq) compare
Shew_3561 +1.6 9.0 nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) compare
Shew_3709 +1.6 10.8 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_0534 +1.6 4.7 major facilitator transporter (RefSeq) compare
Shew_0618 +1.5 2.4 hypothetical protein (RefSeq) compare
Shew_1559 +1.5 1.9 hypothetical protein (RefSeq) compare
Shew_1601 +1.5 3.2 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_2502 +1.5 5.7 ABC transporter-related protein (RefSeq) compare
Shew_3499 +1.4 5.4 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_2837 +1.4 1.7 transcription elongation factor GreA (RefSeq) compare
Shew_2481 +1.4 9.4 porin (RefSeq) compare
Shew_0330 +1.4 1.1 nifR3 family TIM-barrel protein (RefSeq) compare
Shew_2320 +1.4 9.3 RNA methyltransferase (RefSeq) compare
Shew_3225 +1.4 7.8 glutathione synthetase (RefSeq) compare
Shew_2838 carB +1.4 8.9 carbamoyl phosphate synthase large subunit (RefSeq) compare
Shew_2839 +1.4 9.2 carbamoyl phosphate synthase small subunit (RefSeq) compare
Shew_2812 deoD +1.4 6.8 purine nucleoside phosphorylase (RefSeq) compare
Shew_0022 +1.3 11.1 TrkH family potassium uptake protein (RefSeq) compare
Shew_0421 +1.3 1.4 phage shock protein C, PspC (RefSeq) compare
Shew_2571 +1.3 6.7 propionyl-CoA carboxylase (RefSeq) compare
Shew_1230 +1.3 3.8 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq) compare
Shew_3621 +1.2 1.6 RNA-binding S4 domain-containing protein (RefSeq) compare
Shew_2357 +1.2 3.0 D,D-heptose 1,7-bisphosphate phosphatase (RefSeq) compare
Shew_1563 +1.2 6.9 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_1657 sucC +1.2 2.6 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_1402 +1.2 8.5 glucose-1-phosphate thymidylyltransferase (RefSeq) compare
Shew_3500 +1.2 3.4 putative endoribonuclease L-PSP (RefSeq) compare
Shew_0462 +1.2 1.4 hypothetical protein (RefSeq) compare
Shew_0565 +1.2 2.2 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) compare
Shew_0320 +1.2 8.5 frataxin family protein (RefSeq) compare
Shew_0722 +1.2 1.8 hypothetical protein (RefSeq) compare
Shew_0867 +1.2 1.8 malate dehydrogenase (RefSeq) compare
Shew_2087 +1.1 3.5 hypothetical protein (RefSeq) compare
Shew_2008 +1.1 1.3 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_0086 +1.1 9.6 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_1822 +1.1 3.9 aconitate hydratase (RefSeq) compare
Shew_1411 +1.1 7.9 hexapaptide repeat-containing transferase (RefSeq) compare
Shew_3316 +1.1 9.1 magnesium transporter (RefSeq) compare
Shew_3224 +1.1 5.5 hypothetical protein (RefSeq) compare
Shew_2962 +1.1 3.6 malate dehydrogenase (RefSeq) compare
Shew_2414 +1.1 1.4 ATP-NAD/AcoX kinase (RefSeq) compare
Shew_2637 +1.1 3.0 PII uridylyl-transferase (RefSeq) compare
Shew_2558 +1.1 2.0 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_2573 +1.0 6.6 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_1210 +1.0 3.3 stationary-phase survival protein SurE (RefSeq) compare
Shew_3189 +1.0 2.9 hypothetical protein (RefSeq) compare
Shew_1439 +1.0 6.1 maleylacetoacetate isomerase (RefSeq) compare
Shew_1820 prpB +1.0 2.1 2-methylisocitrate lyase (RefSeq) compare
Shew_2584 +1.0 5.3 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_1287 +1.0 3.1 hypothetical protein (RefSeq) compare
Shew_3312 +0.9 4.0 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) compare
Shew_0225 +0.9 1.1 phosphoheptose isomerase (RefSeq) compare
Shew_1050 +0.9 3.7 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_2086 +0.9 1.6 hypothetical protein (RefSeq) compare
Shew_1185 glyA +0.9 4.5 serine hydroxymethyltransferase (RefSeq) compare
Shew_2337 tgt +0.9 3.6 queuine tRNA-ribosyltransferase (RefSeq) compare
Shew_2498 +0.9 1.4 extracellular solute-binding protein (RefSeq) compare
Shew_0613 +0.9 4.9 cysteine/glutathione ABC transporter membrane/ATP-binding component (RefSeq) compare
Shew_3295 +0.9 6.7 AFG1 family ATPase (RefSeq) compare
Shew_3266 dipZ +0.9 1.4 thiol:disulfide interchange protein precursor (RefSeq) compare
Shew_1602 +0.9 1.4 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_1407 +0.9 6.5 short-chain dehydrogenase/reductase SDR (RefSeq) compare
Shew_1594 +0.8 3.8 RluA family pseudouridine synthase (RefSeq) compare
Shew_1931 +0.8 1.3 alkylphosphonate utilization operon protein PhnA (RefSeq) compare
Shew_3363 +0.8 1.4 3-dehydroquinate dehydratase, type II (RefSeq) compare
Shew_2919 +0.8 2.2 translation-associated GTPase (RefSeq) compare
Shew_0728 +0.8 5.5 dihydroorotase (RefSeq) compare
Shew_1823 +0.8 2.1 putative AcnD-accessory protein PrpF (RefSeq) compare
Shew_0268 +0.8 1.0 transcriptional antiterminator, Rof (RefSeq) compare
Shew_2814 deoA +0.8 2.1 thymidine phosphorylase (RefSeq) compare
Shew_1455 +0.8 1.2 dual specificity protein phosphatase (RefSeq) compare
Shew_0580 +0.8 2.0 succinylglutamic semialdehyde dehydrogenase (RefSeq) compare
Shew_0191 +0.8 1.2 cytochrome c, class I (RefSeq) compare
Shew_2504 +0.8 2.8 PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq) compare
Shew_3150 +0.8 1.4 antibiotic biosynthesis monooxygenase (RefSeq) compare
Shew_3305 +0.8 1.6 CaCA family Na(+)/Ca(+) antiporter (RefSeq) compare
Shew_1673 fabG +0.8 1.6 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq) compare
Shew_3431 aceE +0.8 5.8 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Shew_3548 +0.8 0.9 hypothetical protein (RefSeq) compare
Shew_2285 +0.7 0.9 UDP-glucose 4-epimerase (RefSeq) compare
Shew_1092 +0.7 4.7 amino acid carrier protein (RefSeq) compare
Shew_0127 +0.7 2.3 LexA repressor (RefSeq) compare
Shew_0359 fre +0.7 3.9 FMN reductase (RefSeq) compare
Shew_2202 +0.7 1.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq) compare
Shew_1090 +0.7 1.0 OmpA/MotB domain-containing protein (RefSeq) compare
Shew_1859 +0.7 1.0 carbonate dehydratase (RefSeq) compare
Shew_2554 +0.7 1.5 outer membrane protein W (RefSeq) compare
Shew_0342 +0.7 5.2 hypothetical protein (RefSeq) compare
Shew_1833 +0.7 1.7 putative serine protein kinase, PrkA (RefSeq) compare
Shew_2748 +0.7 3.2 PAS/PAC sensor signal transduction histidine kinase (RefSeq) compare
Shew_2228 +0.7 4.5 inosine kinase (RefSeq) compare
Shew_2198 +0.7 1.7 histidinol dehydrogenase (RefSeq) compare
Shew_0627 +0.7 3.4 hypothetical protein (RefSeq) compare
Shew_1667 +0.7 3.1 acetyl-CoA acetyltransferase (RefSeq) compare
Shew_2687 +0.7 1.6 hypothetical protein (RefSeq) compare
Shew_0531 +0.7 2.8 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_3681 +0.7 3.5 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_3568 +0.7 2.8 cation diffusion facilitator family transporter (RefSeq) compare
Shew_0441 +0.7 3.3 dehydratase (RefSeq) compare
Shew_2165 +0.7 2.5 aldose 1-epimerase (RefSeq) compare
Shew_3395 +0.7 1.1 radical SAM domain-containing protein (RefSeq) compare
Shew_0585 +0.7 1.9 cAMP-regulatory protein (RefSeq) compare
Shew_3197 +0.7 0.8 hypothetical protein (RefSeq) compare
Shew_3267 +0.7 4.1 sodium/hydrogen exchanger (RefSeq) compare
Shew_1122 +0.7 2.8 hypothetical protein (RefSeq) compare
Shew_1577 +0.7 1.0 aminotransferase, class IV (RefSeq) compare
Shew_2667 +0.7 4.2 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_2813 +0.7 1.4 phosphopentomutase (RefSeq) compare
Shew_R0033 +0.7 1.6 tRNA-Arg (RefSeq) compare
Shew_3598 +0.7 0.8 AsnC family transcriptional regulator (RefSeq) compare
Shew_3432 pdhR +0.7 1.3 transcriptional regulator PdhR (RefSeq) compare
Shew_1403 +0.7 5.1 dTDP-4-dehydrorhamnose reductase (RefSeq) compare
Shew_1438 +0.7 2.3 fumarylacetoacetate (FAA) hydrolase (RefSeq) compare
Shew_1935 +0.7 2.2 hypothetical protein (RefSeq) compare
Shew_1398 +0.6 2.2 NusG antitermination factor (RefSeq) compare
Shew_1574 +0.6 2.5 ATP-binding Mrp/Nbp35 family protein (RefSeq) compare
Shew_1111 +0.6 2.1 LacI family transcription regulator (RefSeq) compare
Shew_1302 +0.6 2.3 cytochrome bd ubiquinol oxidase, subunit I (RefSeq) compare
Shew_0459 +0.6 2.4 PAS/PAC sensor hybrid histidine kinase (RefSeq) compare
Shew_2184 +0.6 1.6 septum site-determining protein MinC (RefSeq) compare
Shew_1339 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_3446 +0.6 4.1 peptidase M23B (RefSeq) compare
Shew_2035 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_2907 +0.6 1.6 invasion gene expression up-regulator, SirB (RefSeq) compare
Shew_0930 +0.6 1.3 AMMECR1 domain-containing protein (RefSeq) compare
Shew_3556 +0.6 1.2 aminotransferase, class V (RefSeq) compare
Shew_1454 +0.6 2.4 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Shew_1035 +0.6 1.0 LysR family transcriptional regulator (RefSeq) compare
Shew_0570 +0.6 1.0 ubiquinol-cytochrome c reductase, iron-sulfur subunit (RefSeq) compare
Shew_3682 +0.6 5.2 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_2419 +0.6 4.3 phosphohistidine phosphatase, SixA (RefSeq) compare
Shew_2153 +0.6 1.3 LysR family transcriptional regulator (RefSeq) compare
Shew_2121 +0.6 1.3 diguanylate cyclase (RefSeq) compare
Shew_2211 +0.6 2.7 phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq) compare
Shew_R0049 +0.6 3.0 tRNA-Pro (RefSeq) compare
Shew_2074 +0.6 2.0 TonB-dependent receptor (RefSeq) compare
Shew_0615 +0.6 2.4 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq) compare
Shew_1714 +0.6 2.1 alpha/beta hydrolase fold (RefSeq) compare
Shew_3064 gcvT +0.6 3.4 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_0430 +0.6 1.8 histone family protein DNA-binding protein (RefSeq) compare
Shew_2282 +0.6 1.2 Fis family transcriptional regulator (RefSeq) compare
Shew_1854 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_0193 +0.6 1.8 cytochrome c-type biogenesis protein CcmF (RefSeq) compare
Shew_2171 +0.6 1.8 peptidase T2, asparaginase 2 (RefSeq) compare
Shew_0625 +0.6 4.2 spermidine synthase (RefSeq) compare
Shew_2241 +0.6 1.6 hypothetical protein (RefSeq) compare
Shew_2409 +0.6 1.5 short chain dehydrogenase (RefSeq) compare
Shew_2668 +0.6 4.1 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_1922 +0.6 2.9 phosphoglucomutase (RefSeq) compare
Shew_1593 +0.6 1.2 ribonuclease (RefSeq) compare
Shew_2770 +0.6 0.5 polyprenyl synthetase (RefSeq) compare
Shew_3711 +0.6 0.5 rhodanese domain-containing protein (RefSeq) compare
Shew_1289 +0.6 1.8 hypothetical protein (RefSeq) compare
Shew_1878 +0.5 0.9 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_1021 +0.5 4.8 peptidase M23B (RefSeq) compare
Shew_1437 +0.5 3.6 transcriptional regulator, TyrR (RefSeq) compare
Shew_2099 +0.5 1.2 DTW domain-containing protein (RefSeq) compare
Shew_2939 +0.5 1.7 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) compare
Shew_3622 hslO +0.5 4.4 Hsp33-like chaperonin (RefSeq) compare
Shew_0374 hslU +0.5 3.1 ATP-dependent protease ATP-binding subunit (RefSeq) compare
Shew_3628 +0.5 0.8 MgtC/SapB transporter (RefSeq) compare
Shew_3062 +0.5 3.6 glycine dehydrogenase (RefSeq) compare
Shew_2889 +0.5 0.9 uncharacterized lipoprotein (RefSeq) compare
Shew_2665 +0.5 4.4 beta-ketoacyl synthase (RefSeq) compare
Shew_1785 +0.5 0.8 band 7 protein (RefSeq) compare
Shew_0261 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_1731 +0.5 0.6 histidine triad (HIT) protein (RefSeq) compare
Shew_3176 +0.5 1.0 regulatory protein GntR, HTH (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments