Experiment set4IT028 for Agrobacterium fabrum C58

Compare to:

R2A with Sodium nitrite 9 mM

200 most important genes:

  gene name fitness t score description  
Atu0017 -2.8 -2.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0184 -2.8 -4.2 glucokinase compare
Atu0434 -2.5 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1030 -2.4 -2.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2289 -2.3 -11.6 anthranilate synthase component I and II compare
Atu1687 -2.3 -5.9 anthranilate phosphoribosyltransferase compare
Atu2067 -2.2 -1.9 hypothetical protein compare
Atu1028 -2.1 -3.5 hypothetical protein compare
Atu3598 -2.1 -2.7 thiol:disulfide interchange protein compare
Atu1688 -2.0 -4.2 indole-3-glycerol-phosphate synthase compare
Atu2728 -1.9 -5.7 beta (1-->2) glucan export ATP-binding protein compare
Atu1308 -1.9 -3.8 aspartate carbamoyl transferase catalytic subunit compare
Atu0026 -1.9 -1.4 hypothetical protein compare
Atu2439 -1.8 -1.7 hypothetical protein compare
Atu4773 -1.7 -2.6 two component response regulator compare
Atu3469 -1.7 -3.0 phosphoglyceromutase compare
Atu4075 -1.7 -6.4 glycogen synthase compare
Atu2057 -1.7 -2.4 DNA helicase II compare
Atu1163 -1.7 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0769 -1.7 -1.6 protoheme IX farnesyltransferase compare
Atu0598 -1.5 -7.0 phosphogluconate dehydratase compare
Atu0031 -1.5 -2.0 PTS system, IIA component compare
Atu0361 -1.5 -3.4 transcriptional regulator compare
Atu0399 -1.4 -4.7 dihydroorotase compare
Atu1891 -1.4 -2.6 cobalamin biosynthesis protein compare
Atu3730 -1.4 -1.3 hypothetical protein compare
Atu0103 -1.3 -6.2 penicillin-binding protein compare
Atu2710 -1.3 -7.4 hypothetical protein compare
Atu4418 -1.3 -4.8 glutaryl-CoA dehydrogenase compare
Atu5540 -1.3 -1.0 hypothetical protein compare
Atu1446 -1.3 -2.5 two component response regulator compare
Atu3014 -1.3 -3.1 hypothetical protein compare
Atu0565 -1.3 -3.6 hypothetical protein compare
Atu0185 -1.3 -3.9 methylglyoxal synthase compare
Atu3183 -1.3 -1.2 hypothetical protein compare
Atu5142 -1.2 -1.7 hypothetical protein compare
Atu1845 -1.2 -2.1 phosphoribosylformylglycinamidine synthase I compare
Atu0298 -1.2 -3.5 orotidine 5 compare
Atu1075 -1.2 -4.6 amidophosphoribosyltransferase compare
Atu0141 -1.2 -1.6 cytochrome O ubiquinol oxidase subunit I compare
Atu2640 -1.2 -4.5 hypothetical protein compare
Atu1307 -1.1 -5.0 dihydroorotase compare
Atu0400 -1.1 -3.3 orotate phosphoribosyltransferase compare
Atu0486 -1.1 -3.2 dihydroorotate dehydrogenase compare
Atu1686 -1.1 -5.3 peptidyl-prolyl cis-trans isomerse D compare
Atu0319 -1.1 -1.2 ubiquinone biosynthesis protein compare
Atu0401 -1.0 -4.9 fructokinase compare
Atu2073 -1.0 -3.7 membrane protein compare
Atu0041 -1.0 -1.3 glutamine amidotransferase compare
Atu0036 -1.0 -3.3 hypothetical protein compare
Atu2125 -1.0 -1.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0043 -1.0 -1.5 imidazoleglycerol-phosphate dehydratase compare
Atu1844 -1.0 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1581 -0.9 -1.5 hypothetical protein compare
Atu6098 -0.9 -0.6 transcriptional regulator, HTH family compare
Atu0115 -0.9 -0.9 hypothetical protein compare
Atu1213 -0.9 -1.9 hypothetical protein compare
Atu5160 -0.9 -1.8 transcriptional regulator protein compare
Atu4873 -0.9 -5.7 TetR family transcriptional regulator compare
Atu0972 -0.9 -4.6 lipA protein compare
Atu4346 -0.9 -4.1 hypothetical protein compare
Atu0190 -0.9 -5.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu5424 -0.9 -6.0 oxidoreductase compare
Atu1344 -0.8 -1.9 hypothetical protein compare
Atu3755 -0.8 -3.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3392 -0.8 -2.5 methyltransferase compare
Atu4567 -0.8 -3.9 ROK family transcriptional regulator compare
Atu0647 -0.8 -3.6 phosphoribosylamine--glycine ligase compare
Atu0971 -0.8 -2.7 two component sensor kinase compare
Atu0777 -0.8 -0.7 hypothetical protein compare
Atu0189 -0.8 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0188 -0.8 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu2324 -0.8 -3.0 ureidoglycolate hydrolase compare
Atu4108 -0.8 -4.7 ribonuclease D compare
Atu0837 -0.8 -4.3 transcriptional regulator, MarR family compare
Atu5430 -0.8 -0.6 hypothetical protein compare
Atu2766 -0.8 -6.2 NAD-glutamate dehydrogenase compare
Atu1223 -0.8 -1.0 hypothetical protein compare
Atu1364 -0.8 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu8054 -0.8 -0.5 hypothetical protein compare
Atu2809 -0.8 -3.8 cobalamin biosynthesis protein compare
Atu2237 -0.7 -2.5 cytochrome c1 compare
Atu0421 -0.7 -1.1 ABC transporter, membrane spanning protein compare
Atu0912 -0.7 -1.0 Na+/H+ antiporter compare
Atu2650 -0.7 -4.4 glycerol-3-phosphate dehydrogenase compare
Atu2786 -0.7 -3.5 hypothetical protein compare
Atu0723 -0.7 -1.0 FAD dependent oxidoreductase compare
Atu5155 -0.7 -2.9 MarR family transcriptional regulator compare
Atu0535 -0.7 -2.9 hypothetical protein compare
Atu0976 -0.7 -1.8 cycL protein compare
Atu3468 -0.7 -0.8 hypothetical protein compare
Atu4217 -0.7 -1.2 TetR family transcriptional regulator compare
Atu2554 -0.7 -1.2 lysyl-tRNA synthetase compare
Atu0768 -0.7 -4.2 cytochrome-c oxidase chain I compare
Atu3739 -0.7 -1.8 phosphoglycerate kinase compare
Atu3754 -0.7 -3.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1566 -0.7 -0.9 hypothetical protein compare
Atu3496 -0.7 -1.2 hypothetical protein compare
Atu4527 -0.7 -1.3 hypothetical protein compare
Atu0101 -0.7 -1.4 cytochrome c compare
Atu2684 -0.7 -0.9 hypothetical protein compare
Atu0051 -0.7 -2.7 two component sensor kinase compare
Atu4317 -0.7 -2.0 TetR family transcriptional regulator compare
Atu2807 -0.7 -3.2 cob(I)alamin adenosyltransferase compare
Atu3018 -0.6 -1.8 hypothetical protein compare
Atu3727 -0.6 -2.1 hypothetical protein compare
Atu1077 -0.6 -2.0 DNA repair protein compare
Atu0943 -0.6 -1.0 hypothetical protein compare
Atu2484 -0.6 -1.0 hypothetical protein compare
Atu2799 -0.6 -1.8 precorrin-6x reductase compare
Atu3634 -0.6 -2.4 penicillin-binding protein dacf precursor compare
Atu1468 -0.6 -3.1 hypothetical protein compare
Atu5034 -0.6 -1.1 hypothetical protein compare
Atu2352 -0.6 -1.4 hypothetical protein compare
Atu0767 -0.6 -3.0 cytochrome c oxidase subunit II compare
Atu3001 -0.6 -2.1 hypothetical protein compare
Atu4468 -0.6 -2.9 iron transport ABC transporter permease compare
Atu2692 -0.6 -2.2 intracellular septation protein compare
Atu1725 -0.6 -2.1 hypothetical protein compare
Atu2127 -0.6 -4.0 L-carnitine dehydratase compare
Atu2796 -0.6 -3.4 precorrin-4 C11-methyltransferase compare
Atu3120 -0.6 -0.7 hypothetical protein compare
Atu1709 -0.6 -2.8 glycosyl hydrolase compare
Atu6039 -0.6 -2.6 conjugal transfer protein compare
Atu0544 -0.6 -1.2 hypothetical protein compare
Atu0272 -0.6 -1.9 transcriptional regulator, MarR family compare
Atu1620 -0.6 -3.9 triosephosphate isomerase compare
Atu1727 -0.6 -2.4 hypothetical protein compare
Atu1759 -0.6 -4.0 L-serine dehydratase compare
Atu8203 -0.6 -1.7 hypothetical protein compare
Atu4859 -0.6 -3.6 hypothetical protein compare
Atu2805 -0.6 -2.6 cobalamin synthesis protein compare
Atu4866 -0.6 -4.1 hypothetical protein compare
Atu3036 -0.6 -1.8 dipeptide ABC transporter permease compare
Atu0142 -0.6 -2.2 cytochrome o ubiquinol oxidase subunit II compare
Atu1851 -0.6 -1.7 BolA/YrbA family protein compare
Atu0369 -0.6 -1.8 hypothetical protein compare
Atu1140 -0.6 -2.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2234 -0.6 -1.4 hypothetical protein compare
Atu0977 -0.5 -1.8 serine protease DO-like protease compare
Atu0062 -0.5 -2.9 transcriptional regulator, ROK family compare
Atu0846 -0.5 -2.2 transcriptional regulator, MarR family compare
Atu1644 -0.5 -1.4 hypothetical protein compare
Atu8144 -0.5 -1.7 hypothetical protein compare
Atu4882 -0.5 -1.7 hypothetical protein compare
Atu3731 -0.5 -2.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu0983 -0.5 -0.9 hypothetical protein compare
Atu8191 -0.5 -1.0 hypothetical protein compare
Atu8053 -0.5 -1.3 hypothetical protein compare
Atu3910 -0.5 -1.5 LamB/YcsF family protein compare
Atu8019 -0.5 -1.4 hypothetical protein compare
Atu2464 -0.5 -1.6 formyltetrahydrofolate deformylase compare
Atu8190 -0.5 -3.0 hypothetical protein compare
Atu1242 -0.5 -2.6 cytochrome oxidase assembly factor compare
Atu1470 -0.5 -0.8 Camphor resistance protein compare
Atu0130 -0.5 -2.1 cytidine deaminase compare
Atu1573 -0.5 -1.0 hypothetical protein compare
Atu1254 -0.5 -0.7 transcriptional regulator, ArsR family compare
Atu2798 -0.5 -1.5 precorrin-6y methyltransferase compare
Atu2193 -0.5 -0.7 hypothetical protein compare
Atu0470 -0.5 -1.4 hypothetical protein compare
Atu2140 -0.5 -1.3 hypothetical protein compare
Atu5475 -0.5 -1.1 hypothetical protein compare
Atu1124 -0.5 -2.4 hypothetical protein compare
Atu3011 -0.5 -1.6 ArsR family transcriptional regulator compare
Atu1103 -0.5 -1.7 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2344 -0.5 -1.3 lactoylglutathione lyase compare
Atu1722 -0.5 -1.7 hypothetical protein compare
Atu1359 -0.5 -0.6 dnaK deletion suppressor protein compare
Atu2238 -0.5 -2.2 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu3026 -0.5 -2.1 short chain dehydrogenase compare
Atu1592 -0.5 -2.3 hypothetical protein compare
Atu0029 -0.5 -2.5 S-adenosylhomocysteine hydrolase compare
Atu3031 -0.5 -0.9 hypothetical protein compare
Atu0038 -0.5 -2.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4072 -0.5 -0.9 nodulation protein N compare
Atu1774 -0.5 -2.2 ABC transporter, substrate binding protein (peptide) compare
Atu0824 -0.5 -0.7 hypothetical protein compare
Atu2204 -0.5 -1.3 hypothetical protein compare
Atu0687 -0.5 -1.3 hypothetical protein compare
Atu2059 -0.5 -3.3 transcriptional regulator, TetR family compare
Atu0322 -0.5 -1.6 enoyl CoA hydratase compare
Atu2733 -0.5 -2.0 hypothetical protein compare
Atu3021 -0.5 -2.8 sugar ABC transporter ATPase compare
Atu2801 -0.5 -1.9 precorrin-2 C20 methyltransferase compare
Atu0025 -0.5 -0.9 hypothetical protein compare
Atu3299 -0.5 -1.0 hypothetical protein compare
Atu4238 -0.5 -2.1 hydrolase compare
Atu1141 -0.5 -1.3 Phosphoribosylglycinamide synthetase compare
Atu8168 -0.5 -1.1 hypothetical protein compare
Atu1463 -0.5 -1.9 glycine cleavage system component H compare
Atu0464 -0.5 -2.7 hypothetical protein compare
Atu4470 -0.5 -2.8 iron ABC transporter ATPase compare
Atu4711 -0.5 -1.7 two component sensor kinase compare
Atu3515 -0.5 -1.5 hypothetical protein compare
Atu3045 -0.5 -2.5 hypothetical protein compare
Atu3054 -0.5 -3.3 hypothetical protein compare
Atu2267 -0.5 -2.6 hypothetical protein compare
Atu0460 -0.5 -2.7 hypothetical protein compare
Atu0386 -0.5 -1.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Sodium nitrite across organisms