Experiment set4IT027 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Growth with Sodium Chloride 200 mM; with MOPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS25750 -4.5 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS20580 -4.4 -12.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28535 -4.4 -15.7 dihydroxy-acid dehydratase compare
PFLU_RS25640 -4.2 -10.9 ketol-acid reductoisomerase compare
PFLU_RS28390 -4.2 -12.6 methionine biosynthesis protein MetW compare
PFLU_RS20565 -4.1 -13.9 3-isopropylmalate dehydrogenase compare
PFLU_RS28165 -4.1 -11.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS20510 -4.0 -14.1 O-succinylhomoserine sulfhydrylase compare
PFLU_RS20575 -4.0 -7.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS25815 -3.9 -2.7 transcription termination/antitermination protein NusA compare
PFLU_RS23590 -3.9 -3.8 gluconokinase compare
PFLU_RS01610 -3.8 -13.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28385 -3.8 -15.1 homoserine O-acetyltransferase compare
PFLU_RS01625 -3.7 -2.5 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28695 -3.6 -9.3 phosphoglycerate dehydrogenase compare
PFLU_RS29880 -3.6 -16.6 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS23070 -3.4 -1.7 50S ribosomal protein L32 compare
PFLU_RS23585 -3.4 -11.0 GntP family permease compare
PFLU_RS25760 -3.3 -15.2 glucose-6-phosphate isomerase compare
PFLU_RS29515 -3.3 -11.7 RidA family protein compare
PFLU_RS09055 -3.3 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS25735 -3.2 -8.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS24025 -3.2 -13.3 quinolinate synthase NadA compare
PFLU_RS24765 -3.2 -19.1 2-isopropylmalate synthase compare
PFLU_RS23725 -3.0 -14.8 glucose-6-phosphate dehydrogenase compare
PFLU_RS01605 -3.0 -11.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS07540 -3.0 -2.4 class II glutamine amidotransferase compare
PFLU_RS29885 -3.0 -10.1 LysR family transcriptional regulator compare
PFLU_RS24330 -3.0 -7.8 phosphogluconate dehydratase compare
PFLU_RS27635 -3.0 -11.2 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS28645 -2.9 -14.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS02490 -2.9 -12.6 phosphoserine phosphatase SerB compare
PFLU_RS18505 -2.8 -13.0 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01965 -2.8 -1.9 ATP-dependent protease subunit HslV compare
PFLU_RS29875 -2.8 -14.2 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS15410 -2.8 -3.1 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS28195 -2.8 -14.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS12260 -2.7 -1.8 hypothetical protein compare
PFLU_RS06055 -2.7 -1.6 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS25715 -2.7 -12.1 RNA polymerase-binding protein DksA compare
PFLU_RS14550 -2.7 -8.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS22105 -2.7 -6.7 cysteine synthase CysM compare
PFLU_RS12975 -2.7 -6.3 DUF934 domain-containing protein compare
PFLU_RS21495 -2.7 -3.6 TlpA family protein disulfide reductase compare
PFLU_RS00415 -2.7 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS12980 -2.6 -11.0 nitrite/sulfite reductase compare
PFLU_RS22740 -2.6 -7.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS28965 -2.6 -11.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS26545 -2.6 -10.8 sel1 repeat family protein compare
PFLU_RS04070 -2.6 -6.9 peptide chain release factor 3 compare
PFLU_RS03970 -2.6 -8.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS25755 -2.6 -4.8 pantoate--beta-alanine ligase compare
PFLU_RS01900 -2.6 -7.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS20540 -2.5 -11.4 phosphoribosylanthranilate isomerase compare
PFLU_RS00870 -2.4 -2.3 hypothetical protein compare
PFLU_RS20515 -2.4 -4.5 amidophosphoribosyltransferase compare
PFLU_RS02590 -2.4 -9.9 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS27650 -2.4 -12.2 biotin synthase BioB compare
PFLU_RS02980 -2.4 -2.7 precorrin-8X methylmutase compare
PFLU_RS14805 -2.3 -2.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS26595 -2.3 -1.6 lipoprotein compare
PFLU_RS18615 -2.3 -3.0 NADH-quinone oxidoreductase subunit A compare
PFLU_RS30160 -2.3 -3.2 ParB/RepB/Spo0J family partition protein compare
PFLU_RS00175 -2.3 -9.8 tryptophan synthase subunit alpha compare
PFLU_RS04465 -2.3 -8.5 ATP phosphoribosyltransferase compare
PFLU_RS05385 -2.2 -12.8 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS19550 -2.2 -1.4 ABC transporter ATP-binding protein compare
PFLU_RS01895 -2.2 -5.1 phosphoribosyl-ATP diphosphatase compare
PFLU_RS23310 -2.2 -10.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS27365 -2.2 -7.2 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28655 -2.2 -12.0 HAD family hydrolase compare
PFLU_RS04565 -2.1 -1.4 TMEM165/GDT1 family protein compare
PFLU_RS07640 -2.1 -8.9 universal stress protein compare
PFLU_RS00180 -2.1 -6.9 tryptophan synthase subunit beta compare
PFLU_RS24125 -2.1 -7.7 cold-shock protein compare
PFLU_RS22595 -2.1 -4.9 OmpA family protein compare
PFLU_RS22095 -2.1 -13.8 GTP diphosphokinase compare
PFLU_RS08410 -2.0 -6.8 HTH-type transcriptional regulator CysB compare
PFLU_RS04470 -2.0 -10.1 histidinol dehydrogenase compare
PFLU_RS01645 -2.0 -10.1 S41 family peptidase compare
PFLU_RS18725 -2.0 -2.2 alpha/beta hydrolase compare
PFLU_RS03645 -2.0 -11.7 tetratricopeptide repeat protein compare
PFLU_RS25730 -2.0 -12.9 PAS domain S-box protein compare
PFLU_RS01620 -2.0 -7.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS18395 -2.0 -1.8 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS02050 -2.0 -12.4 NAD(P)-binding protein compare
PFLU_RS25120 -2.0 -2.2 response regulator compare
PFLU_RS07785 -1.9 -11.1 VacJ family lipoprotein compare
PFLU_RS23065 -1.9 -8.0 phosphate acyltransferase PlsX compare
PFLU_RS25225 -1.9 -7.9 disulfide bond formation protein B compare
PFLU_RS27645 -1.9 -9.2 8-amino-7-oxononanoate synthase compare
PFLU_RS11980 -1.9 -6.3 precorrin-6A synthase (deacetylating) compare
PFLU_RS02790 -1.9 -1.6 TetR family transcriptional regulator compare
PFLU_RS21215 -1.9 -1.8 YheU family protein compare
PFLU_RS24095 -1.8 -2.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS13540 -1.8 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS21985 -1.8 -4.8 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS04435 -1.8 -7.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS23305 -1.8 -9.0 arginine N-succinyltransferase compare
PFLU_RS02365 -1.8 -9.6 glycosyltransferase compare
PFLU_RS24085 -1.8 -4.3 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS30790 -1.8 -1.4 hypothetical protein compare
PFLU_RS27370 -1.8 -8.0 anthranilate phosphoribosyltransferase compare
PFLU_RS07650 -1.8 -10.7 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS24535 -1.8 -1.9 DUF3509 domain-containing protein compare
PFLU_RS06130 -1.7 -7.7 phosphoenolpyruvate carboxylase compare
PFLU_RS24485 -1.7 -8.9 hypothetical protein compare
PFLU_RS08760 -1.7 -2.7 phosphonate C-P lyase system protein PhnG compare
PFLU_RS20690 -1.7 -3.6 hypothetical protein compare
PFLU_RS24335 -1.7 -9.2 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS04415 -1.7 -2.3 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS27630 -1.6 -3.5 dethiobiotin synthase compare
PFLU_RS01960 -1.6 -1.9 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS09535 -1.6 -1.1 TIGR03750 family conjugal transfer protein compare
PFLU_RS04440 -1.6 -8.9 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS05250 -1.6 -4.7 elongation factor 4 compare
PFLU_RS04650 -1.6 -10.7 ABC transporter substrate-binding protein compare
PFLU_RS19495 -1.6 -4.0 SDR family oxidoreductase compare
PFLU_RS02000 -1.6 -13.1 penicillin-binding protein 1A compare
PFLU_RS24805 -1.6 -5.6 helix-turn-helix domain-containing protein compare
PFLU_RS22030 -1.6 -2.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS19555 -1.6 -1.4 histidine phosphatase family protein compare
PFLU_RS23920 -1.6 -2.5 septation protein A compare
PFLU_RS08350 -1.6 -2.6 ABC transporter ATP-binding protein compare
PFLU_RS09720 -1.6 -1.6 single-stranded DNA-binding protein compare
PFLU_RS24785 -1.6 -6.7 outer membrane protein assembly factor BamB compare
PFLU_RS25800 -1.6 -4.9 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS02045 -1.5 -12.5 glutamate synthase large subunit compare
PFLU_RS25585 -1.5 -1.8 exodeoxyribonuclease V subunit alpha compare
PFLU_RS07225 -1.5 -9.9 L-aspartate oxidase compare
PFLU_RS24255 -1.5 -7.1 pyruvate kinase compare
PFLU_RS02975 -1.5 -5.9 precorrin-3B synthase compare
PFLU_RS01500 -1.5 -1.9 cell division protein FtsQ compare
PFLU_RS03610 -1.5 -5.3 redox-regulated ATPase YchF compare
PFLU_RS08505 -1.4 -5.1 protease HtpX compare
PFLU_RS08655 -1.4 -1.0 heme ABC transporter permease compare
PFLU_RS04195 -1.4 -3.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS10765 -1.4 -7.7 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS18640 -1.4 -3.8 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS18620 -1.4 -4.8 NADH-quinone oxidoreductase subunit B compare
PFLU_RS26770 -1.4 -8.1 DedA family protein compare
PFLU_RS18075 -1.4 -2.9 LysR family transcriptional regulator compare
PFLU_RS15165 -1.4 -2.3 RidA family protein compare
PFLU_RS04530 -1.4 -1.9 hypothetical protein compare
PFLU_RS29095 -1.4 -11.0 polyphosphate kinase 1 compare
PFLU_RS04430 -1.4 -5.8 ATP-binding cassette domain-containing protein compare
PFLU_RS07665 -1.4 -1.5 type I DNA topoisomerase compare
PFLU_RS13795 -1.3 -2.1 hypothetical protein compare
PFLU_RS28325 -1.3 -6.4 energy transducer TonB compare
PFLU_RS13035 -1.3 -2.4 cobalamin biosynthesis protein CobW compare
PFLU_RS18530 -1.3 -3.3 DNA translocase FtsK compare
PFLU_RS22070 -1.3 -2.8 phosphoribosylglycinamide formyltransferase compare
PFLU_RS27465 -1.3 -3.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS13365 -1.3 -1.7 hypothetical protein compare
PFLU_RS08665 -1.3 -1.7 cytochrome c maturation protein CcmE compare
PFLU_RS12800 -1.3 -2.2 amino acid ABC transporter ATP-binding protein compare
PFLU_RS21665 -1.3 -5.4 MinD/ParA family protein compare
PFLU_RS25360 -1.3 -5.1 glutamate 5-kinase compare
PFLU_RS22000 -1.3 -5.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS23240 -1.2 -7.1 magnesium transporter compare
PFLU_RS28320 -1.2 -2.1 glutathione synthase compare
PFLU_RS29290 -1.2 -2.8 hypothetical protein compare
PFLU_RS18585 -1.2 -1.1 high frequency lysogenization protein HflD compare
PFLU_RS30165 -1.2 -5.5 ParA family protein compare
PFLU_RS27620 -1.2 -8.7 acyl-CoA dehydrogenase compare
PFLU_RS28725 -1.2 -7.1 DUF2059 domain-containing protein compare
PFLU_RS27640 -1.2 -2.3 alpha/beta fold hydrolase compare
PFLU_RS22395 -1.2 -3.7 fumarate/nitrate reduction transcriptional regulator Fnr compare
PFLU_RS02565 -1.2 -3.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS05885 -1.2 -4.3 recombinase RecA compare
PFLU_RS18655 -1.2 -2.2 NADH-quinone oxidoreductase subunit J compare
PFLU_RS15220 -1.2 -4.6 hypothetical protein compare
PFLU_RS04200 -1.2 -6.3 cytochrome bc complex cytochrome b subunit compare
PFLU_RS27445 -1.1 -7.2 phosphotransferase compare
PFLU_RS31755 -1.1 -1.3 hypothetical protein compare
PFLU_RS04635 -1.1 -2.6 BON domain-containing protein compare
PFLU_RS14820 -1.1 -3.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS08675 -1.1 -1.2 DsbE family thiol:disulfide interchange protein compare
PFLU_RS29890 -1.1 -4.7 transcriptional regulator HexR compare
PFLU_RS09980 -1.1 -8.2 peptidase S41 compare
PFLU_RS13050 -1.1 -3.1 VWA domain-containing protein compare
PFLU_RS01595 -1.1 -6.7 AsmA family protein compare
PFLU_RS19730 -1.1 -2.6 glyoxylate/hydroxypyruvate reductase A compare
PFLU_RS13015 -1.1 -4.0 precorrin-4 C(11)-methyltransferase compare
PFLU_RS16695 -1.1 -2.8 branched-chain amino acid ABC transporter permease compare
PFLU_RS05590 -1.1 -4.8 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS05750 -1.1 -0.9 methionine--tRNA ligase compare
PFLU_RS29285 -1.1 -3.7 HAD-IA family hydrolase compare
PFLU_RS29065 -1.1 -0.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS05875 -1.1 -2.6 lysozyme compare
PFLU_RS28650 -1.1 -3.9 RNA pyrophosphohydrolase compare
PFLU_RS18985 -1.1 -3.3 helix-turn-helix domain-containing protein compare
PFLU_RS04655 -1.1 -3.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
PFLU_RS01095 -1.1 -2.7 ribbon-helix-helix protein, CopG family compare
PFLU_RS01615 -1.1 -2.2 DUF2164 domain-containing protein compare
PFLU_RS11605 -1.1 -3.8 helix-turn-helix transcriptional regulator compare
PFLU_RS05340 -1.1 -2.0 SDR family NAD(P)-dependent oxidoreductase compare
PFLU_RS29490 -1.0 -4.4 ribonuclease PH compare
PFLU_RS04325 -1.0 -7.2 ribonuclease G compare
PFLU_RS31595 -1.0 -3.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in stress experiments

For stress D-Glucose across organisms