Experiment set4IT023 for Pseudomonas fluorescens FW300-N2C3

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
AO356_10880 +1.0 2.2 hypothetical protein compare
AO356_26350 +1.0 1.8 acetyl-CoA acetyltransferase compare
AO356_03775 +0.9 2.0 flagellar assembly protein FliO compare
AO356_19240 +0.9 2.3 cupin compare
AO356_28710 +0.9 1.8 aldehyde dehydrogenase compare
AO356_00560 +0.8 2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_22405 +0.8 2.1 hypothetical protein compare
AO356_01840 +0.8 2.6 uracil permease compare
AO356_19045 +0.8 6.0 chemotaxis protein CheY compare
AO356_04025 +0.8 2.0 hypothetical protein compare
AO356_11410 +0.7 2.4 hypothetical protein compare
AO356_02955 +0.7 1.9 hypothetical protein compare
AO356_00130 +0.7 2.6 XRE family transcriptional regulator compare
AO356_26915 +0.7 2.4 Fe-S oxidoreductase compare
AO356_07600 +0.7 2.0 hypothetical protein compare
AO356_06105 +0.7 1.9 cold-shock protein compare
AO356_24620 +0.7 2.3 glutathione S-transferase compare
AO356_15665 +0.7 2.3 large-conductance mechanosensitive channel compare
AO356_08000 +0.7 2.0 short-chain dehydrogenase compare
AO356_24805 +0.7 3.1 alkaline phosphatase compare
AO356_21765 +0.6 0.8 GntR family transcriptional regulator compare
AO356_26095 +0.6 1.8 Rieske (2Fe-2S) protein compare
AO356_29990 +0.6 1.2 cupin compare
AO356_00125 +0.6 1.6 hypothetical protein compare
AO356_28645 +0.6 1.5 AraC family transcriptional regulator compare
AO356_09880 +0.6 1.7 antitoxin compare
AO356_25150 +0.6 1.7 molybdenum cofactor biosynthesis protein B compare
AO356_06350 +0.6 1.7 hypothetical protein compare
AO356_19610 +0.6 2.2 2-hydroxy-3-oxopropionate reductase compare
AO356_22870 +0.6 2.1 glycerate kinase compare
AO356_23400 +0.5 1.8 phosphonate ABC transporter compare
AO356_23945 +0.5 1.1 hypothetical protein compare
AO356_02445 +0.5 1.7 prevent-host-death protein compare
AO356_29355 +0.5 1.0 hypothetical protein compare
AO356_28315 +0.5 2.2 hypothetical protein compare
AO356_07820 +0.5 2.9 hypothetical protein compare
AO356_04085 +0.5 2.0 hypothetical protein compare
AO356_28345 +0.5 1.5 TetR family transcriptional regulator compare
AO356_04935 +0.5 1.4 3-oxoadipate--succinyl-CoA transferase compare
AO356_24485 +0.5 0.7 SAM-dependent methyltransferase compare
AO356_26815 +0.5 1.4 short-chain dehydrogenase compare
AO356_25800 +0.5 1.4 prevent-host-death protein compare
AO356_24745 +0.5 0.6 iron dicitrate transport regulator FecR compare
AO356_16005 +0.5 2.5 methyltransferase compare
AO356_25560 +0.5 2.3 2-keto-3-deoxy-L-rhamnonate aldolase compare
AO356_25155 +0.5 2.3 molybdenum cofactor biosynthesis protein MoaA compare
AO356_20570 +0.5 2.1 baseplate assembly protein compare
AO356_05795 +0.5 1.5 phage tail protein compare
AO356_25130 +0.5 1.7 hypothetical protein compare
AO356_09165 +0.5 1.4 glycosyl transferase compare
AO356_24835 +0.5 1.9 DoxX family protein compare
AO356_18555 +0.5 1.1 peptidase M4 compare
AO356_01865 +0.5 1.9 tyrosine protein phosphatase compare
AO356_29285 +0.5 2.4 LysR family transcriptional regulator compare
AO356_21215 +0.5 2.0 RNA polymerase subunit sigma-24 compare
AO356_29795 +0.5 1.0 amino acid transporter compare
AO356_00750 +0.5 1.9 oxidoreductase compare
AO356_19145 +0.4 1.0 5,6-dimethylbenzimidazole synthase compare
AO356_15140 +0.4 1.0 homoserine dehydrogenase compare
AO356_28090 +0.4 0.8 ABC transporter ATP-binding protein compare
AO356_26955 +0.4 1.5 carboxylate--amine ligase compare
AO356_02945 +0.4 1.3 molybdenum cofactor sulfurase compare
AO356_14060 +0.4 1.2 hypothetical protein compare
AO356_28825 +0.4 1.4 histidine kinase compare
AO356_26410 +0.4 1.7 methyltransferase type 12 compare
AO356_29420 +0.4 2.0 1-aminocyclopropane-1-carboxylate deaminase compare
AO356_01895 +0.4 1.7 AraC family transcriptional regulator compare
AO356_28380 +0.4 2.0 ABC transporter permease compare
AO356_21150 +0.4 1.9 PvdJ/PvdD/PvdP-like protein compare
AO356_22585 +0.4 1.1 MerR family transcriptional regulator compare
AO356_23940 +0.4 1.8 Crp/Fnr family transcriptional regulator compare
AO356_07370 +0.4 1.5 nicotinate-nucleotide pyrophosphorylase compare
AO356_27360 +0.4 1.6 nitrile hydratase subunit alpha compare
AO356_03855 +0.4 3.3 AAA family ATPase compare
AO356_02645 +0.4 1.7 protein MxiH compare
AO356_03065 +0.4 1.7 AAA family ATPase compare
AO356_24685 +0.4 1.5 2-dehydro-3-deoxygluconokinase compare
AO356_06890 +0.4 1.2 cysteine methyltransferase compare
AO356_16435 +0.4 0.9 hypothetical protein compare
AO356_13710 +0.4 1.6 fructose-bisphosphate aldolase compare
AO356_21795 +0.4 0.9 PBS lyase compare
AO356_02905 +0.4 3.1 amino acid ABC transporter substrate-binding protein compare
AO356_25170 +0.4 1.2 lipid carrier protein compare
AO356_27615 +0.4 0.8 hypothetical protein compare
AO356_00920 +0.4 0.9 cold-shock protein compare
AO356_29100 +0.4 1.3 epimerase compare
AO356_14445 +0.4 1.0 lipoate--protein ligase compare
AO356_06735 +0.4 1.1 hypothetical protein compare
AO356_21945 +0.4 1.7 AraC family transcriptional regulator compare
AO356_29270 +0.4 1.1 ABC transporter permease compare
AO356_07730 +0.4 0.8 hypothetical protein compare
AO356_29700 +0.4 1.9 2-methylcitrate dehydratase compare
AO356_29215 +0.4 1.8 dehydrogenase compare
AO356_20280 +0.4 1.6 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data) compare
AO356_14920 +0.4 0.9 hypothetical protein compare
AO356_10935 +0.4 1.1 hypothetical protein compare
AO356_29545 +0.4 1.9 nitrate ABC transporter substrate-binding protein compare
AO356_19975 +0.4 1.9 chemotaxis protein CheY compare
AO356_00665 +0.4 1.4 IclR family transcriptional regulator compare
AO356_20045 +0.4 1.8 ABC transporter compare
AO356_01230 +0.4 1.0 GntR family transcriptional regulator compare
AO356_25720 +0.4 1.1 polyamine ABC transporter permease compare
AO356_17395 +0.4 2.0 glutamine ABC transporter ATP-binding protein compare
AO356_00255 +0.4 1.6 DNA-binding protein compare
AO356_10985 +0.4 1.7 chorismate--pyruvate lyase compare
AO356_25600 +0.4 1.4 AraC family transcriptional regulator compare
AO356_27295 +0.4 1.9 hypothetical protein compare
AO356_27770 +0.4 1.5 hypothetical protein compare
AO356_01605 +0.4 1.2 hypothetical protein compare
AO356_16155 +0.4 1.8 hypothetical protein compare
AO356_09350 +0.4 1.4 hypothetical protein compare
AO356_30415 +0.4 1.4 pyrroloquinoline quinone biosynthesis protein PqqC compare
AO356_00725 +0.4 1.3 chemotaxis protein CheY compare
AO356_26710 +0.4 1.5 2-haloalkanoic acid dehalogenase compare
AO356_09170 +0.4 1.0 glycosyl transferase compare
AO356_17840 +0.4 1.3 pilus assembly protein PilZ compare
AO356_23675 +0.4 1.4 hydroxyacid dehydrogenase compare
AO356_07790 +0.4 1.4 permease DsdX compare
AO356_28945 +0.4 1.9 aminomethyltransferase compare
AO356_03675 +0.4 1.5 hypothetical protein compare
AO356_26325 +0.4 1.5 dolichol-phosphate mannosyltransferase compare
AO356_05615 +0.4 0.9 hypothetical protein compare
AO356_24295 +0.4 1.6 2,4-diaminobutyrate 4-aminotransferase compare
AO356_27310 +0.3 1.7 LysR family transcriptional regulator compare
AO356_23090 +0.3 1.7 dihydropyrimidine dehydrogenase compare
AO356_24965 +0.3 0.5 GntR family transcriptional regulator compare
AO356_24245 +0.3 1.2 siderophore-iron reductase FhuF compare
AO356_25665 +0.3 0.7 3-beta hydroxysteroid dehydrogenase compare
AO356_24405 +0.3 1.7 tRNA hydroxylase compare
AO356_22385 +0.3 1.5 enamine deaminase RidA compare
AO356_04970 +0.3 2.0 aspartate-semialdehyde dehydrogenase compare
AO356_16245 +0.3 1.9 chromosome partitioning protein compare
AO356_18480 +0.3 1.0 translation initiation factor 2 compare
AO356_08385 +0.3 0.7 urease subunit beta compare
AO356_21265 +0.3 1.6 hypothetical protein compare
AO356_29660 +0.3 1.2 IclR family transcriptional regulator compare
AO356_26685 +0.3 1.4 phosphate import ATP-binding protein PstB compare
AO356_19765 +0.3 1.5 helicase compare
AO356_15260 +0.3 0.6 dehydratase compare
AO356_06605 +0.3 1.2 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO356_15460 +0.3 0.8 hypothetical protein compare
AO356_22240 +0.3 1.7 hypothetical protein compare
AO356_18435 +0.3 0.9 hypothetical protein compare
AO356_28705 +0.3 1.4 hypothetical protein compare
AO356_07080 +0.3 1.3 FagA protein compare
AO356_23585 +0.3 1.4 hypothetical protein compare
AO356_27870 +0.3 1.4 ATPase compare
AO356_27425 +0.3 1.3 porin compare
AO356_23555 +0.3 1.7 ABC transporter permease compare
AO356_30265 +0.3 1.1 cupin compare
AO356_25245 +0.3 0.7 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO356_05035 +0.3 0.4 GNAT family acetyltransferase compare
AO356_07160 +0.3 0.9 4-carboxymuconolactone decarboxylase compare
AO356_18395 +0.3 1.1 exclusion suppressor FxsA compare
AO356_26085 +0.3 1.1 GntR family transcriptional regulator compare
AO356_26305 +0.3 1.9 TetR family transcriptional regulator compare
AO356_23320 +0.3 1.4 1-carboxy-3-chloro-3,4-dihydroxycyclo hexa-1,5-diene dehydrogenase compare
AO356_19555 +0.3 1.0 hypothetical protein compare
AO356_00175 +0.3 1.4 conjugal transfer protein compare
AO356_29915 +0.3 1.6 hypothetical protein compare
AO356_02210 +0.3 1.0 copper-binding protein compare
AO356_04990 +0.3 2.3 3-beta hydroxysteroid dehydrogenase compare
AO356_29190 +0.3 1.0 3-demethylubiquinone-9 3-methyltransferase compare
AO356_28025 +0.3 1.8 aldehyde dehydrogenase compare
AO356_22165 +0.3 1.1 leucyl/phenylalanyl-tRNA--protein transferase compare
AO356_09230 +0.3 1.8 excinuclease compare
AO356_00975 +0.3 0.8 hypothetical protein compare
AO356_28900 +0.3 1.8 MFS transporter compare
AO356_13415 +0.3 1.1 hypothetical protein compare
AO356_30270 +0.3 1.2 LysR family transcriptional regulator compare
AO356_25145 +0.3 1.0 pyridoxine 5'-phosphate oxidase compare
AO356_27765 +0.3 1.0 hypothetical protein compare
AO356_02665 +0.3 1.3 hypothetical protein compare
AO356_24375 +0.3 1.0 type VI secretion protein compare
AO356_25835 +0.3 0.8 hypothetical protein compare
AO356_07785 +0.3 1.3 RpiR family transcriptional regulator compare
AO356_21440 +0.3 2.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_16685 +0.3 1.4 pressure-regulated protein compare
AO356_07055 +0.3 1.1 phosphocarrier protein HPr compare
AO356_21055 +0.3 1.1 hypothetical protein compare
AO356_17720 +0.3 0.5 DNA mismatch repair protein MutT compare
AO356_22800 +0.3 2.0 glutathione reductase compare
AO356_03005 +0.3 1.7 transcriptional regulator compare
AO356_23325 +0.3 1.3 short-chain dehydrogenase compare
AO356_12610 +0.3 0.5 Fe-S oxidoreductase compare
AO356_27170 +0.3 1.1 XRE family transcriptional regulator compare
AO356_22780 +0.3 1.5 hypothetical protein compare
AO356_28925 +0.3 1.5 methylmalonyl-CoA epimerase compare
AO356_12825 +0.3 0.7 hypothetical protein compare
AO356_24430 +0.3 1.0 lysine transporter LysE compare
AO356_03665 +0.3 1.1 flagellar hook-length control protein FliK compare
AO356_03015 +0.3 1.6 sodium:proton antiporter compare
AO356_26100 +0.3 1.4 LysR family transcriptional regulator compare
AO356_29610 +0.3 1.5 AraC family transcriptional regulator compare
AO356_03225 +0.3 1.9 esterase compare
AO356_16690 +0.3 1.2 peptidylprolyl isomerase compare
AO356_06280 +0.3 1.7 hypothetical protein compare
AO356_27525 +0.3 1.7 cytochrome B compare
AO356_04700 +0.3 2.0 tRNA-Gly compare
AO356_18780 +0.3 0.4 carbon storage regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in lb experiments